NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1359064691|gb|PRR61691|]
View 

dTMP kinase [Borreliella burgdorferi]

Protein Classification

thymidylate kinase( domain architecture ID 11488586)

thymidylate kinase catalyzes the reversible phosphorylation of deoxythymidine monophosphate (dTMP) to deoxythymidine diphosphate (dTDP), using ATP as its preferred phosphoryl donor

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
4-192 3.57e-67

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


:

Pssm-ID: 161676  Cd Length: 195  Bit Score: 204.13  E-value: 3.57e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   4 ILKNFYCIEGIDGSGKTSITNKLKDLCNDES-RYYFTKEPSSGIIGEMIRKQ-LMNFENPLEESTFAYLYAADRHDHLyk 81
Cdd:TIGR00041   1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGyDVLFTREPGGTPIGEKIRELlLNENDEPLTDKAEALLFAADRHEHL-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  82 kGGILEILNTKSRKIITDRYLFSSIAYQG-------KLGYELNKNFPL--PEKVFFIETDPNIAYERIQKNRTQsDLFEL 152
Cdd:TIGR00041  79 -EDKIKPALAEGKLVISDRYVFSSIAYQGgargideDLVLELNEDALGdmPDLTIYLDIDPEVALERLRKRGEL-DREEF 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1359064691 153 EKYKTFEQIALKYLKIFKKlEKKINVIYINNSIKDNLDKN 192
Cdd:TIGR00041 157 EKLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195
 
Name Accession Description Interval E-value
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
4-192 3.57e-67

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 204.13  E-value: 3.57e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   4 ILKNFYCIEGIDGSGKTSITNKLKDLCNDES-RYYFTKEPSSGIIGEMIRKQ-LMNFENPLEESTFAYLYAADRHDHLyk 81
Cdd:TIGR00041   1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGyDVLFTREPGGTPIGEKIRELlLNENDEPLTDKAEALLFAADRHEHL-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  82 kGGILEILNTKSRKIITDRYLFSSIAYQG-------KLGYELNKNFPL--PEKVFFIETDPNIAYERIQKNRTQsDLFEL 152
Cdd:TIGR00041  79 -EDKIKPALAEGKLVISDRYVFSSIAYQGgargideDLVLELNEDALGdmPDLTIYLDIDPEVALERLRKRGEL-DREEF 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1359064691 153 EKYKTFEQIALKYLKIFKKlEKKINVIYINNSIKDNLDKN 192
Cdd:TIGR00041 157 EKLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195
Thymidylate_kin pfam02223
Thymidylate kinase;
11-191 1.91e-49

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 158.62  E-value: 1.91e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  11 IEGIDGSGKTSITNKLKDLCNDESR-YYFTKEPSSGIIGEMIRKQLMNfENPLEESTFAYLYAADRHDHLYKKggiLEIL 89
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIkVVFTREPGGTPIGEKIRELLLR-NEELSPLTEALLFAADRIQHLEQK---IKPA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  90 NTKSRKIITDRYLFSSIAYQG------KLGYELNKNFPL-PEKVFFIETDPNIAYERIQKNRtQSDLFELEKYKTFEQIA 162
Cdd:pfam02223  77 LKQGKTVIVDRYLFSGIAYQGakggdlDLVLSLNPDVPGkPDLTFLLDVDPEVALKRLRRRG-ELEKTEFEQLDFLRKVR 155
                         170       180
                  ....*....|....*....|....*....
gi 1359064691 163 LKYLKIFkKLEKKINVIYINNSIKDNLDK 191
Cdd:pfam02223 156 ERYLELA-KFDERIKIIDASLSIEEVHEE 183
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
8-179 1.64e-44

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 146.84  E-value: 1.64e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNKLKDLCNDESR-YYFTKEPSSGIIGEMIRKQLMNFENPLEESTFAYLYAADRHDHLYKKggIL 86
Cdd:COG0125     5 FIVFEGIDGSGKSTQIKLLAEYLEARGYdVVLTREPGGTPLGEAIRELLLGDNEDMSPRTELLLFAADRAQHVEEV--IR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  87 EILNtKSRKIITDRYLFSSIAYQG---KLG----YELNK---NFPLPEKVFFIETDPNIAYERIQKNRTQSDLFELEKYK 156
Cdd:COG0125    83 PALA-AGKIVICDRYVDSSLAYQGggrGLDlewiRQLNRfatGGLKPDLTILLDVPPEVALARARARGGELDRFESEDLE 161
                         170       180
                  ....*....|....*....|...
gi 1359064691 157 TFEQIALKYLKIFKKLEKKINVI 179
Cdd:COG0125   162 FHERVREGYLELAAKEPERIVVI 184
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
8-196 1.78e-29

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 108.12  E-value: 1.78e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNKLKD-LCNDESRYYFTKEPSSGIIGEMIRK-QLMNFENPLEESTFAYLYAADRHDHlykkggI 85
Cdd:cd01672     2 FIVFEGIDGAGKTTLIELLAErLEARGYEVVLTREPGGTPIGEAIRElLLDPEDEKMDPRAELLLFAADRAQH------V 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  86 LEILNTKSRK---IITDRYLFSSIAYQGKLGY----------ELNKNFPLPEKVFFIETDPNIAYERIQkNRTQSDLFEL 152
Cdd:cd01672    76 EEVIKPALARgkiVLSDRFVDSSLAYQGAGRGlgealiealnDLATGGLKPDLTILLDIDPEVGLARIE-ARGRDDRDEQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1359064691 153 EKYKTFEQIALKYLKIFKKLEKKINVIYINNSIKDNLDKNAKKI 196
Cdd:cd01672   155 EGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAI 198
PLN02924 PLN02924
thymidylate kinase
8-139 6.75e-05

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 42.02  E-value: 6.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNK----LKDLCNDESRYYFTKEPSSgiIGEMIRKQLMNfENPLEESTFAYLYAADRhdhlYKKG 83
Cdd:PLN02924   18 LIVLEGLDRSGKSTQCAKlvsfLKGLGVAAELWRFPDRTTS--VGQMISAYLSN-KSQLDDRAIHLLFSANR----WEKR 90
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1359064691  84 GILEILNTKSRKIITDRYLFSSIAYQGKLGYELN------KNFPLPEKVFFIETDPNIAYER 139
Cdd:PLN02924   91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEwckapeVGLPAPDLVLYLDISPEEAAER 152
 
Name Accession Description Interval E-value
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
4-192 3.57e-67

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 204.13  E-value: 3.57e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   4 ILKNFYCIEGIDGSGKTSITNKLKDLCNDES-RYYFTKEPSSGIIGEMIRKQ-LMNFENPLEESTFAYLYAADRHDHLyk 81
Cdd:TIGR00041   1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGyDVLFTREPGGTPIGEKIRELlLNENDEPLTDKAEALLFAADRHEHL-- 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  82 kGGILEILNTKSRKIITDRYLFSSIAYQG-------KLGYELNKNFPL--PEKVFFIETDPNIAYERIQKNRTQsDLFEL 152
Cdd:TIGR00041  79 -EDKIKPALAEGKLVISDRYVFSSIAYQGgargideDLVLELNEDALGdmPDLTIYLDIDPEVALERLRKRGEL-DREEF 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1359064691 153 EKYKTFEQIALKYLKIFKKlEKKINVIYINNSIKDNLDKN 192
Cdd:TIGR00041 157 EKLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195
Thymidylate_kin pfam02223
Thymidylate kinase;
11-191 1.91e-49

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 158.62  E-value: 1.91e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  11 IEGIDGSGKTSITNKLKDLCNDESR-YYFTKEPSSGIIGEMIRKQLMNfENPLEESTFAYLYAADRHDHLYKKggiLEIL 89
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIkVVFTREPGGTPIGEKIRELLLR-NEELSPLTEALLFAADRIQHLEQK---IKPA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  90 NTKSRKIITDRYLFSSIAYQG------KLGYELNKNFPL-PEKVFFIETDPNIAYERIQKNRtQSDLFELEKYKTFEQIA 162
Cdd:pfam02223  77 LKQGKTVIVDRYLFSGIAYQGakggdlDLVLSLNPDVPGkPDLTFLLDVDPEVALKRLRRRG-ELEKTEFEQLDFLRKVR 155
                         170       180
                  ....*....|....*....|....*....
gi 1359064691 163 LKYLKIFkKLEKKINVIYINNSIKDNLDK 191
Cdd:pfam02223 156 ERYLELA-KFDERIKIIDASLSIEEVHEE 183
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
8-179 1.64e-44

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 146.84  E-value: 1.64e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNKLKDLCNDESR-YYFTKEPSSGIIGEMIRKQLMNFENPLEESTFAYLYAADRHDHLYKKggIL 86
Cdd:COG0125     5 FIVFEGIDGSGKSTQIKLLAEYLEARGYdVVLTREPGGTPLGEAIRELLLGDNEDMSPRTELLLFAADRAQHVEEV--IR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  87 EILNtKSRKIITDRYLFSSIAYQG---KLG----YELNK---NFPLPEKVFFIETDPNIAYERIQKNRTQSDLFELEKYK 156
Cdd:COG0125    83 PALA-AGKIVICDRYVDSSLAYQGggrGLDlewiRQLNRfatGGLKPDLTILLDVPPEVALARARARGGELDRFESEDLE 161
                         170       180
                  ....*....|....*....|...
gi 1359064691 157 TFEQIALKYLKIFKKLEKKINVI 179
Cdd:COG0125   162 FHERVREGYLELAAKEPERIVVI 184
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
8-196 1.78e-29

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 108.12  E-value: 1.78e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNKLKD-LCNDESRYYFTKEPSSGIIGEMIRK-QLMNFENPLEESTFAYLYAADRHDHlykkggI 85
Cdd:cd01672     2 FIVFEGIDGAGKTTLIELLAErLEARGYEVVLTREPGGTPIGEAIRElLLDPEDEKMDPRAELLLFAADRAQH------V 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  86 LEILNTKSRK---IITDRYLFSSIAYQGKLGY----------ELNKNFPLPEKVFFIETDPNIAYERIQkNRTQSDLFEL 152
Cdd:cd01672    76 EEVIKPALARgkiVLSDRFVDSSLAYQGAGRGlgealiealnDLATGGLKPDLTILLDIDPEVGLARIE-ARGRDDRDEQ 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1359064691 153 EKYKTFEQIALKYLKIFKKLEKKINVIYINNSIKDNLDKNAKKI 196
Cdd:cd01672   155 EGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAI 198
PLN02924 PLN02924
thymidylate kinase
8-139 6.75e-05

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 42.02  E-value: 6.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691   8 FYCIEGIDGSGKTSITNK----LKDLCNDESRYYFTKEPSSgiIGEMIRKQLMNfENPLEESTFAYLYAADRhdhlYKKG 83
Cdd:PLN02924   18 LIVLEGLDRSGKSTQCAKlvsfLKGLGVAAELWRFPDRTTS--VGQMISAYLSN-KSQLDDRAIHLLFSANR----WEKR 90
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1359064691  84 GILEILNTKSRKIITDRYLFSSIAYQGKLGYELN------KNFPLPEKVFFIETDPNIAYER 139
Cdd:PLN02924   91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEwckapeVGLPAPDLVLYLDISPEEAAER 152
dNK pfam01712
Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2. ...
10-201 1.24e-04

Deoxynucleoside kinase; This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyze the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside. Using ATP and yielding ADP in the process.


Pssm-ID: 396326  Cd Length: 201  Bit Score: 41.15  E-value: 1.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  10 CIEGIDGSGKTSITNKLKDLCNDESRYyftkEPSSGIIGEMIRKQLMNFEN---PLEESTFAYLYAADRHDHLYKKGGIL 86
Cdd:pfam01712   2 SIEGNIGAGKSTLTKILSKRLGFKVFE----EPVDRWTNPYLDKFYKDPSRwsfALQTYFLNSRFKQQLEAFFTGQVVIL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359064691  87 EilntksRKIITDRYLFSSIAYQ-GKLGYE-----------LNKNFPLPEKVFFIETDPNIAYERIQK-NRTQSDLFELE 153
Cdd:pfam01712  78 E------RSIYSDRYIFAKMLYDkGTMSDEeyktykdlydnMLLEFPKPDLIIYLKTSPETCLERIKKrGRTEEQNISLD 151
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1359064691 154 KYKTFE---QIALKYLKIFKKLekkinVIYINNSIKDNLDKNAKKIFNLIK 201
Cdd:pfam01712 152 YLERLHekyEAWLKKLNLSPVL-----VIDGDELDFVFFEEDREDVMNEVN 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH