NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1356821758|gb|PRI97018|]
View 

Sulfate transport system permease protein CysT [Haemophilus influenzae]

Protein Classification

ABC transporter permease; molybdate ABC transporter permease( domain architecture ID 10797192)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs| molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 7-230 2.17e-74

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


:

Pssm-ID: 130643  Cd Length: 225  Bit Score: 224.97  E-value: 2.17e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   7 LIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLL 86
Cdd:TIGR01581   1 LIRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  87 LF-SSQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPL 165
Cdd:TIGR01581  81 LFgRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1356821758 166 VCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLV 230
Cdd:TIGR01581 161 LAGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
 
Name Accession Description Interval E-value
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 7-230 2.17e-74

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 224.97  E-value: 2.17e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   7 LIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLL 86
Cdd:TIGR01581   1 LIRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  87 LF-SSQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPL 165
Cdd:TIGR01581  81 LFgRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1356821758 166 VCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLV 230
Cdd:TIGR01581 161 LAGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-236 1.43e-62

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 196.51  E-value: 1.43e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   1 MGSVLSLIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVT 80
Cdd:COG0555    28 LAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  81 GLSLLLLFSSQAILAELL-PFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIP 159
Cdd:COG0555   108 GIALLLLFGPNGWLGQLLaPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILP 187

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1356821758 160 MCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG0555   188 LLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQR 264
modB PRK09421
molybdate ABC transporter permease subunit;
28-224 2.66e-20

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 85.74  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  28 ALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELLpfiSKWI-- 105
Cdd:PRK09421   10 AVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL---YEWFgi 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 106 ---FSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGA 182
Cdd:PRK09421   87 sfaFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGA 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1356821758 183 TLMLAGATRFKTETLPMAVYLNISSGDFE--------IAIGASLWLLFIS 224
Cdd:PRK09421  167 TITFVSNIPGETQTIPSAMYTLIQTPGGEsaaarlciISIAIALASLLLS 216
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 32-221 2.93e-14

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 68.73  E-value: 2.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  32 SLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELlpfisKWIFSPVGI 111
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-----GLLYTPTAM 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 112 IIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFK---TLIKiEIPMcwkPLVCASVLAWSRAIGEFGATLMLAG 188
Cdd:NF038017   76 IIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQalwTLLK-EARF---ALLAAVLAGFGRAISEVGAVMMVGG 151

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1356821758 189 ATRFKTETLPMAVYLNISSGDFEIAIGASLWLL 221
Cdd:NF038017  152 NIRGYTRVLTTAIVLETSKGNFDLALALGIILL 184
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 29-224 9.41e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.61  E-value: 9.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  29 LLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLllfssqAILAELLPFISKWIFSP 108
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLV------LLFGVLLGWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 109 VGIIIAQTYIASsILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAG 188
Cdd:cd06261    75 PALILALLLIAP-FARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1356821758 189 ATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFIS 224
Cdd:cd06261   154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 64-238 1.01e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.90  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  64 FFDTLFDLPMVLPPLVtglsllllfssQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASY 143
Cdd:pfam00528  19 LLRPLIDLLQALPSFV-----------LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAAR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 144 TLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRFkTETLPMAVYLNISSGDFEIAIGASLWLLFI 223
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-GLLLIEAILGYDYPEIQGPVLAAALILLLL 166

                         170
                  ....*....|....*
gi 1356821758 224 STCLLLVLRMINRAV 238
Cdd:pfam00528 167 NLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 7-230 2.17e-74

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 224.97  E-value: 2.17e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   7 LIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLL 86
Cdd:TIGR01581   1 LIRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  87 LF-SSQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPL 165
Cdd:TIGR01581  81 LFgRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1356821758 166 VCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLV 230
Cdd:TIGR01581 161 LAGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-236 1.43e-62

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 196.51  E-value: 1.43e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   1 MGSVLSLIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVT 80
Cdd:COG0555    28 LAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  81 GLSLLLLFSSQAILAELL-PFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIP 159
Cdd:COG0555   108 GIALLLLFGPNGWLGQLLaPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILP 187

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1356821758 160 MCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG0555   188 LLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQR 264
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 27-236 5.79e-50

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 162.53  E-value: 5.79e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  27 FALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELL--PFISKW 104
Cdd:COG4149     7 SALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLeeLFGISL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 105 IFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATL 184
Cdd:COG4149    87 VFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGATL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1356821758 185 MLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG4149   167 MFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNR 218
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 30-236 4.57e-33

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 118.89  E-value: 4.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  30 LMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELLPFIS-KWIFSP 108
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGiSLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 109 VGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAG 188
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1356821758 189 ATRFKTETLPMAVYLNISSgDFEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:TIGR02141 161 NIPGETQTIPLAIYDAVES-DYELAHQLSLVLLAISLIVLLLVELLNK 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-236 2.38e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 94.84  E-value: 2.38e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  11 LDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGlsllllfss 90
Cdd:COG1178   322 LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLG--------- 392

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  91 qaiLAELLPFISKWIF----SPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLV 166
Cdd:COG1178   393 ---LGLLLLFNRPLPLllygTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLL 469

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 167 CASVLAWSRAIGEFGATLMLAgatRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG1178   470 AAALLVFVTSMKELSATLLLR---PPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLG 536
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-237 2.72e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 94.84  E-value: 2.72e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   1 MGSVLSLIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVT 80
Cdd:COG1178    28 LLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  81 GLSLLLLF----SSQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKI 156
Cdd:COG1178   108 ALAWIALFgpngLLNTLLRALFGLEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRV 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 157 EIPMCWKPLVCASVLAWSRAIGEFGATLMLAGatrfKTETLPMAVYLNISS-GDFEIAIGASLWLLFISTCLLLVLRMIN 235
Cdd:COG1178   188 TLPLLRPAIAAGALLVFLLCLADFGTPLVLGG----GYTTLTTAIYQAWLGdFDLGAAAALALVLLLLVLLLLLLERRLR 263


                  ..
gi 1356821758 236 RA 237
Cdd:COG1178   264 RR 265
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 13-237 1.05e-21

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 90.17  E-value: 1.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  13 FHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGlsllllfssqa 92
Cdd:COG1177    47 LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLG----------- 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  93 iLAELLPFIS-KWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVL 171
Cdd:COG1177   116 -VALLLLFSAlGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL 194

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1356821758 172 AWSRAIGEFGATLMLAGATrfkTETLPMAVYLNISSG-DFEIAIGASLWLLFISTCLLLVLRMINRA 237
Cdd:COG1177   195 AFTLSFDEFVITLFLAGPG---VTTLPVYIYSMIRRGiSPEINALSTLLILLSLLLLLLAERLRRRG 258
modB PRK09421
molybdate ABC transporter permease subunit;
28-224 2.66e-20

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 85.74  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  28 ALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELLpfiSKWI-- 105
Cdd:PRK09421   10 AVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL---YEWFgi 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 106 ---FSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGA 182
Cdd:PRK09421   87 sfaFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGA 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1356821758 183 TLMLAGATRFKTETLPMAVYLNISSGDFE--------IAIGASLWLLFIS 224
Cdd:PRK09421  167 TITFVSNIPGETQTIPSAMYTLIQTPGGEsaaarlciISIAIALASLLLS 216
cysT CHL00187
sulfate transport protein; Provisional
 1-202 1.54e-15

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 73.12  E-value: 1.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758   1 MGSVLSLIAKLDFHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVT 80
Cdd:CHL00187   29 ILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  81 GLSLLLLFSSQAILAELLPFIS-KWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIP 159
Cdd:CHL00187  109 GLTLATVYGDNGWIGHLLSHLGiQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFP 188

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1356821758 160 MCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVY 202
Cdd:CHL00187  189 PLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIF 231
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 32-221 2.93e-14

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 68.73  E-value: 2.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  32 SLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELlpfisKWIFSPVGI 111
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-----GLLYTPTAM 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 112 IIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFK---TLIKiEIPMcwkPLVCASVLAWSRAIGEFGATLMLAG 188
Cdd:NF038017   76 IIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQalwTLLK-EARF---ALLAAVLAGFGRAISEVGAVMMVGG 151

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1356821758 189 ATRFKTETLPMAVYLNISSGDFEIAIGASLWLL 221
Cdd:NF038017  152 NIRGYTRVLTTAIVLETSKGNFDLALALGIILL 184
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
29-227 1.05e-13

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 68.63  E-value: 1.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  29 LLMSLGTSLFSLILALCIAipsaWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELL-PFISKWIFS 107
Cdd:PRK10971   64 LLSAFVASIFNAVFGLLMA----WILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLaKFDIKVTYT 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 108 PVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLA 187
Cdd:PRK10971  140 WLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIA 219

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1356821758 188 GATRFKTETLPMAVYLNISSGDFEIA-------IGASLWLLFISTCL 227
Cdd:PRK10971  220 GNIAWKTEVTSLMIFVRLQEFDYPAAsaiasviLAASLLLLFSINTL 266
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 29-224 9.41e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.61  E-value: 9.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  29 LLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLllfssqAILAELLPFISKWIFSP 108
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLV------LLFGVLLGWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 109 VGIIIAQTYIASsILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAG 188
Cdd:cd06261    75 PALILALLLIAP-FARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1356821758 189 ATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFIS 224
Cdd:cd06261   154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
20-203 3.35e-07

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 49.75  E-value: 3.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  20 LFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQAILAELL- 98
Cdd:PRK11602   57 LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLd 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  99 PFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIG 178
Cdd:PRK11602  137 EHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIG 216

                         170       180
                  ....*....|....*....|....*
gi 1356821758 179 EFGATLMLAGATRFKTETLPMAVYL 203
Cdd:PRK11602  217 EFGAVSVVSGSIRGETLSLPLQIEL 241
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 122-236 9.25e-07

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 48.49  E-value: 9.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 122 ILLRSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRF-------KT 194
Cdd:COG0581   128 VVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFlplslfdPF 207

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1356821758 195 ETLPMAVYLNISSGD---FEIAIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG0581   208 ATLPVHIYNLASSPYpaaQELAWAAALVLLLLVLLLNLLARLLRR 252
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 13-188 1.91e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 45.06  E-value: 1.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  13 FHFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQA 92
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  93 ILAELLPFISkwIFSPVGIIIAQTYI----ASSILLRSTRGifssfeSGYRF--ASYTLGLSPFKTLIKIEIPMCWKPLV 166
Cdd:TIGR03262 120 LLKGLLGGFS--IYGFWGIVIGEVFYtfphALMILVTALSL------ADGRLyeAARAMGASPWRTFFTVTLPGAKYGLI 191

                         170       180
                  ....*....|....*....|..
gi 1356821758 167 CASVLAWSRAIGEFGATLMLAG 188
Cdd:TIGR03262 192 SAAFVVFTLVITDFGVPKVIGG 213
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 64-238 1.01e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.90  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  64 FFDTLFDLPMVLPPLVtglsllllfssQAILAELLPFISKWIFSPVGIIIAQTYIASSILLRSTRGIFSSFESGYRFASY 143
Cdd:pfam00528  19 LLRPLIDLLQALPSFV-----------LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAAR 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 144 TLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRFkTETLPMAVYLNISSGDFEIAIGASLWLLFI 223
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-GLLLIEAILGYDYPEIQGPVLAAALILLLL 166

                         170
                  ....*....|....*
gi 1356821758 224 STCLLLVLRMINRAV 238
Cdd:pfam00528 167 NLLVDILQRLLDPRV 181
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 127-236 1.60e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 42.00  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 127 TRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETL-----PMAV 201
Cdd:COG0573   175 SRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVAGNAPQIPFSLfdpgrTLTA 254

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1356821758 202 YLNISSGDFEI-------AIGASLWLLFISTCLLLVLRMINR 236
Cdd:COG0573   255 LIALEFGEAPFgslhysaLFALGLVLFVITLLVNLLARLIVR 296
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 28-188 6.13e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 37.25  E-value: 6.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758  28 ALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPF-QSFFDTLFDLPMVLPPLVTGLSLLLlfssqaILAELL-PFISKWI 105
Cdd:TIGR02138  64 LIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKRvRSVLKPVVELLAGIPSVVYGFWGLF------VLVPFLkPHFQPFL 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356821758 106 FSPVGIIIAQTY--IASSILL---------RSTRGIFSSFESGYRFASYTLGLSPFKTLIKIEIPMCWKPLVCASVLAWS 174
Cdd:TIGR02138 138 GSNLGLIPLFGGpiLTAGIVLaimilptiaSISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLG 217

                         170
                  ....*....|....
gi 1356821758 175 RAIGEFGATLMLAG 188
Cdd:TIGR02138 218 RALGETMAVTMVIG 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH