|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-251 |
0e+00 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 499.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK 80
Cdd:PRK13509 1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNIHQAQNHDEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN 160
Cdd:PRK13509 81 VRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 161 SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ 240
Cdd:PRK13509 161 SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNADPEVLQQ 240
|
250
....*....|.
gi 1353173520 241 LEAQGVSILRV 251
Cdd:PRK13509 241 LEAQGVSILLV 251
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-251 |
3.56e-81 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 243.89 E-value: 3.56e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQrPRWTPMNLHQAQNHDEK 80
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSA-AAEPPFAERETLNAEEK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCG-KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSE 159
Cdd:COG1349 80 RAIARAAASLIEDGDTIFLDAGTTTLALARALPDrRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 160 --NSLYAgHWMFTSGKGLTAE-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPE 236
Cdd:COG1349 160 alRRFRA-DKAFLGASGIDAEgGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPE 238
|
250
....*....|....*
gi 1353173520 237 ILQQLEAQGVSILRV 251
Cdd:COG1349 239 LLEALEEAGVEVIVA 253
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
75-231 |
1.83e-49 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 159.60 E-value: 1.83e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 75 QNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGK-PVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITL 153
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRrNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 154 SPQGSEN-SLYAGHWMFTSGKGLTAE-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGK 231
Cdd:pfam00455 81 GPLAEEFlRQFNVDKAFIGANGIDLEgGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-57 |
5.62e-17 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 72.64 E-value: 5.62e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1353173520 6 RHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAE 57
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
4-50 |
2.06e-03 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 36.41 E-value: 2.06e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1353173520 4 AQRHQILLEMLAQLGFVT------VEKVVERLGISPA----TARRDINKLDESGKLK 50
Cdd:cd16169 5 LRRENEILEVLKELGGVVnlekkfLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKLK 61
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-251 |
0e+00 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 499.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK 80
Cdd:PRK13509 1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNIHQAQNHDEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN 160
Cdd:PRK13509 81 VRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 161 SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQ 240
Cdd:PRK13509 161 SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNADPEVLQQ 240
|
250
....*....|.
gi 1353173520 241 LEAQGVSILRV 251
Cdd:PRK13509 241 LEAQGVSILLV 251
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-251 |
3.56e-81 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 243.89 E-value: 3.56e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQrPRWTPMNLHQAQNHDEK 80
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSA-AAEPPFAERETLNAEEK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCG-KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSE 159
Cdd:COG1349 80 RAIARAAASLIEDGDTIFLDAGTTTLALARALPDrRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 160 --NSLYAgHWMFTSGKGLTAE-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPE 236
Cdd:COG1349 160 alRRFRA-DKAFLGASGIDAEgGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPE 238
|
250
....*....|....*
gi 1353173520 237 ILQQLEAQGVSILRV 251
Cdd:COG1349 239 LLEALEEAGVEVIVA 253
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
75-231 |
1.83e-49 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 159.60 E-value: 1.83e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 75 QNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGK-PVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITL 153
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRrNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 154 SPQGSEN-SLYAGHWMFTSGKGLTAE-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGK 231
Cdd:pfam00455 81 GPLAEEFlRQFNVDKAFIGANGIDLEgGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
1-251 |
2.33e-26 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 102.84 E-value: 2.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEA--ITQQRP--RWTPMNLHQaqn 76
Cdd:PRK10434 1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLnkEESDPPidHKTLINTHK--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 77 hdeKVRIAKAASQLVNPGESVVINCGSTAF----LLGREmcgKPVQIITNYLPLANYLIDQEHDSVIIM-GGQYNKsQSI 151
Cdd:PRK10434 78 ---KELIAEAAVSLIHDGDSIILDAGSTVLqmvpLLSRF---NNITVMTNSLHIVNALSELDNEQTILMpGGTFRK-KSA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 152 TLSPQGSENSLYAghwmFTSGK-GLTAEGLYKTDMLTAMAE-----QKMLSVVGKLVVLVDSSKIGERAGMLFSRADQID 225
Cdd:PRK10434 151 SFHGQLAENAFEH----FTFDKlFIGTDGIDLNAGVTTFNEvytvsKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVD 226
|
250 260
....*....|....*....|....*.
gi 1353173520 226 MLITGKNANPEILQQLEAQGVSILRV 251
Cdd:PRK10434 227 KLITDAGIDPAFRQALEEKGIEVIIT 252
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
2-251 |
3.24e-21 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 89.53 E-value: 3.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 2 TEAQRHQILlEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTP-MNLHQAQNHDEK 80
Cdd:PRK09802 15 TSERREQII-QRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPsVEDKSALNTAMK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCG-KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKsQSITLSPQGSE 159
Cdd:PRK09802 94 RSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKhTDVIAMTNGMNVANALLEAEGVELLMTGGHLRR-QSQSFYGDQAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 160 NSLYAGHW--MFTSGKGLTAE-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPE 236
Cdd:PRK09802 173 QSLQNYHFdmLFLGVDAIDLErGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAD 252
|
250
....*....|....*
gi 1353173520 237 ILQQLEAQGVSILRV 251
Cdd:PRK09802 253 SLEGLRKAGVEVILV 267
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
6-62 |
8.31e-19 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 77.30 E-value: 8.31e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1353173520 6 RHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQ 62
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNSST 57
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-57 |
5.62e-17 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 72.64 E-value: 5.62e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1353173520 6 RHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAE 57
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
1-248 |
2.34e-16 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 76.05 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPrwTPMNLHQAQNHDEK 80
Cdd:PRK10906 1 MKQTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSSSVN--TPWHDRKATQTEEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 81 VRIAKAASQLVNPGESVVINCGSTAFLLGREMCG-KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLspqGSE 159
Cdd:PRK10906 79 ERIARKVASQIPNGATLFIDIGTTPEAVAHALLNhSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGII---GEA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 160 NSLYAGHWMFTSG----KGLTAEG-LYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNAN 234
Cdd:PRK10906 156 TLDFISQFRLDFGilgiSGIDSDGsLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPP 235
|
250
....*....|....
gi 1353173520 235 PEILQQLEAQGVSI 248
Cdd:PRK10906 236 ASVMQVIEDHHVQL 249
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
3-144 |
1.17e-13 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 68.29 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 3 EAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNGAEAITQQ-RPRWTPMNLHQAQNHDEKV 81
Cdd:PRK10411 2 KAARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYIHRQnQDSGDPFHIRLKSHYAHKA 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1353173520 82 RIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQ 144
Cdd:PRK10411 82 DIAREALAWIEEGMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSGGT 144
|
|
| COG3177 |
COG3177 |
Fic family protein [Transcription]; |
6-55 |
4.15e-07 |
|
Fic family protein [Transcription];
Pssm-ID: 442410 [Multi-domain] Cd Length: 316 Bit Score: 50.07 E-value: 4.15e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1353173520 6 RHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNG 55
Cdd:COG3177 262 RQRKLLELLFENPVLTASELAELLGVSRRTARRDLKDLVELGILEKVGGG 311
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
29-249 |
5.93e-07 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 49.31 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 29 LGISPATARRDINKLDESGKLKkvrnGAEAITQqrPRWTPMNL---HQAQNHDEKVRIAKAASQLVNPGESVVINCGSTA 105
Cdd:PRK10681 31 LGVSEMTIRRDLNAHSAPVVLL----GGYIVLE--PRSASHYLlsdQKSRLVEEKRRAAQLAATLVEPNQTLFFDCGTTT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 106 fllgremcgkPVQI--ITNYLP-------LANYLIDQE--HDSVIIMGGQYNKSQSI--TLSPQGSENSLYAGHWMFTSG 172
Cdd:PRK10681 105 ----------PWIIeaIDNELPftavcysLNTFLALQEkpHCRAILCGGEFHASNAIfkPLDFQQTLDNICPDIAFYSAA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353173520 173 -----KGLT----AEGLYKTDMLtAMAEQKMLsvvgklvvLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEA 243
Cdd:PRK10681 175 gvhvsKGATcfnlEELPVKHWAM-AMAQKHVL--------VVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFVKYAQA 245
|
....*.
gi 1353173520 244 QGVSIL 249
Cdd:PRK10681 246 QRIKLM 251
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
1-47 |
7.67e-05 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 43.14 E-value: 7.67e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1353173520 1 MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESG 47
Cdd:COG2378 1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELG 47
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
8-47 |
1.74e-03 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 35.49 E-value: 1.74e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1353173520 8 QILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESG 47
Cdd:pfam08279 2 QILQLLLEARGPISGQELAEKLGVSRRTIRRDIKILEELG 41
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
4-50 |
2.06e-03 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 36.41 E-value: 2.06e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1353173520 4 AQRHQILLEMLAQLGFVT------VEKVVERLGISPA----TARRDINKLDESGKLK 50
Cdd:cd16169 5 LRRENEILEVLKELGGVVnlekkfLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKLK 61
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
6-47 |
4.37e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 37.21 E-value: 4.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1353173520 6 RHQILlEMLAQLGFVTVEKVVERLGISPATARRDINKLDESG 47
Cdd:COG2345 15 RRRIL-ELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEG 55
|
|
| COG3355 |
COG3355 |
Predicted transcriptional regulator [Transcription]; |
8-53 |
4.40e-03 |
|
Predicted transcriptional regulator [Transcription];
Pssm-ID: 442583 [Multi-domain] Cd Length: 131 Bit Score: 36.48 E-value: 4.40e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1353173520 8 QILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLKKVR 53
Cdd:COG3355 31 EVYLILLENGEPLTVEELAEALDRSRSTVYRSLQKLLEAGLVEREK 76
|
|
| MntR |
COG1321 |
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription]; |
11-55 |
4.85e-03 |
|
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription];
Pssm-ID: 440932 [Multi-domain] Cd Length: 135 Bit Score: 36.33 E-value: 4.85e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1353173520 11 LEMLAQL----GFVTVEKVVERLGISPATARRDINKLDESGKLKKVRNG 55
Cdd:COG1321 12 LKAIYELseegGPVRTSDIAERLGVSPPSVTEMLKKLEEKGLVEYEPYG 60
|
|
| Fe_dep_repress |
pfam01325 |
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria ... |
17-47 |
6.59e-03 |
|
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria toxin repressor. DNA binding is through a helix-turn-helix motif.
Pssm-ID: 396062 [Multi-domain] Cd Length: 57 Bit Score: 34.27 E-value: 6.59e-03
10 20 30
....*....|....*....|....*....|.
gi 1353173520 17 LGFVTVEKVVERLGISPATARRDINKLDESG 47
Cdd:pfam01325 17 KGVVKTKDLAERLNVSPSTVSEMLKKLEKMG 47
|
|
| |
