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Conserved domains on  [gi|1335042766|gb|PNW77379|]
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hypothetical protein CHLRE_10g433950v5 [Chlamydomonas reinhardtii]

Protein Classification

CAAD domain-containing protein( domain architecture ID 10624445)

CAAD domain-containing protein such as Arabidopsis thaliana CURVATURE THYLAKOID1 proteins that modify thylakoid architecture by inducing membrane curvature

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 63-149 1.92e-24

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


:

Pssm-ID: 433752  Cd Length: 85  Bit Score: 89.89  E-value: 1.92e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335042766  63 KQVQGKWESTDDseKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRYFTDPAERESVKKSIDA 142
Cdd:pfam14159   1 KYVGEFWSQYKQ--PLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKS 78


                  ....*..
gi 1335042766 143 FVKSVTG 149
Cdd:pfam14159  79 LKKEILG 85
 
Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 63-149 1.92e-24

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


Pssm-ID: 433752  Cd Length: 85  Bit Score: 89.89  E-value: 1.92e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335042766  63 KQVQGKWESTDDseKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRYFTDPAERESVKKSIDA 142
Cdd:pfam14159   1 KYVGEFWSQYKQ--PLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKS 78


                  ....*..
gi 1335042766 143 FVKSVTG 149
Cdd:pfam14159  79 LKKEILG 85
PLN02777 PLN02777
photosystem I P subunit (PSI-P)
 33-149 2.24e-07

photosystem I P subunit (PSI-P)


Pssm-ID: 178376  Cd Length: 167  Bit Score: 47.68  E-value: 2.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335042766  33 RAVLVRAEPESSTSAEDPSVKlqkqaeEVLKQVQGKWESTDDseKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQ 112
Cdd:PLN02777   57 RNVVTMATGEAPAEVETTELP------EIVKTVQEAWDKVED--KYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLE 128

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1335042766 113 LIGVAVTGLFTYRYFTDPAERESVKKSIDAFVKSVTG 149
Cdd:PLN02777  129 LVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIG 165
 
Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 63-149 1.92e-24

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


Pssm-ID: 433752  Cd Length: 85  Bit Score: 89.89  E-value: 1.92e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335042766  63 KQVQGKWESTDDseKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQLIGVAVTGLFTYRYFTDPAERESVKKSIDA 142
Cdd:pfam14159   1 KYVGEFWSQYKQ--PLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKS 78


                  ....*..
gi 1335042766 143 FVKSVTG 149
Cdd:pfam14159  79 LKKEILG 85
PLN02777 PLN02777
photosystem I P subunit (PSI-P)
 33-149 2.24e-07

photosystem I P subunit (PSI-P)


Pssm-ID: 178376  Cd Length: 167  Bit Score: 47.68  E-value: 2.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335042766  33 RAVLVRAEPESSTSAEDPSVKlqkqaeEVLKQVQGKWESTDDseKPAAIAIIVGVIVAQIAIGATIDAVDKIPIVNKGLQ 112
Cdd:PLN02777   57 RNVVTMATGEAPAEVETTELP------EIVKTVQEAWDKVED--KYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLE 128

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1335042766 113 LIGVAVTGLFTYRYFTDPAERESVKKSIDAFVKSVTG 149
Cdd:PLN02777  129 LVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIG 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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