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Conserved domains on  [gi|1331802740|gb|PNI62225|]
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C9orf153 isoform 1 [Pan troglodytes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5532 pfam17673
Family of unknown function (DUF5532); This is a family of unknown function found in mammals.
 1-89 1.39e-46

Family of unknown function (DUF5532); This is a family of unknown function found in mammals.


:

Pssm-ID: 465450  Cd Length: 92  Bit Score: 144.19  E-value: 1.39e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331802740  1 MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVMSFTRGTDVRG-DLRSV 79
Cdd:pfam17673  1 MSLNRDTDPSEDSREAESPRCSLPELYASLENFNKESKKSNLLKTCGISPNEAQETLSKNLNVMSSTSGTDVRGdDRQPV 80

                         90
                 ....*....|
gi 1331802740 80 IRKTIHESKG 89
Cdd:pfam17673 81 FTCKVVRKEK 90
 
Name Accession Description Interval E-value
DUF5532 pfam17673
Family of unknown function (DUF5532); This is a family of unknown function found in mammals.
 1-89 1.39e-46

Family of unknown function (DUF5532); This is a family of unknown function found in mammals.


Pssm-ID: 465450  Cd Length: 92  Bit Score: 144.19  E-value: 1.39e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331802740  1 MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVMSFTRGTDVRG-DLRSV 79
Cdd:pfam17673  1 MSLNRDTDPSEDSREAESPRCSLPELYASLENFNKESKKSNLLKTCGISPNEAQETLSKNLNVMSSTSGTDVRGdDRQPV 80

                         90
                 ....*....|
gi 1331802740 80 IRKTIHESKG 89
Cdd:pfam17673 81 FTCKVVRKEK 90
 
Name Accession Description Interval E-value
DUF5532 pfam17673
Family of unknown function (DUF5532); This is a family of unknown function found in mammals.
 1-89 1.39e-46

Family of unknown function (DUF5532); This is a family of unknown function found in mammals.


Pssm-ID: 465450  Cd Length: 92  Bit Score: 144.19  E-value: 1.39e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1331802740  1 MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVMSFTRGTDVRG-DLRSV 79
Cdd:pfam17673  1 MSLNRDTDPSEDSREAESPRCSLPELYASLENFNKESKKSNLLKTCGISPNEAQETLSKNLNVMSSTSGTDVRGdDRQPV 80

                         90
                 ....*....|
gi 1331802740 80 IRKTIHESKG 89
Cdd:pfam17673 81 FTCKVVRKEK 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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