|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
239-578 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 571.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:PRK00149 66 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:PRK00149 146 NALRN-----NTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTLQDF 478
Cdd:PRK00149 221 EWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 479 FS-TDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISN 557
Cdd:PRK00149 301 LAaQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEK 380
|
330 340
....*....|....*....|.
gi 1315753892 558 EMQEKREIYNYVMELTVRLKQ 578
Cdd:PRK00149 381 LLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
232-576 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 526.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 232 ERDPQTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSE 311
Cdd:TIGR00362 97 PPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 312 EFTNEFIDALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFE 391
Cdd:TIGR00362 177 KFTNDFVNALRN-----NKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 392 SRLISRFDSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALA 471
Cdd:TIGR00362 252 DRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 472 EQTLQDFFS-TDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMH 550
Cdd:TIGR00362 332 KEALKDLLRaQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLH 411
|
330 340
....*....|....*....|....*.
gi 1315753892 551 AYTRISNEMQEKREIYNYVMELTVRL 576
Cdd:TIGR00362 412 AVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
239-545 |
1.04e-166 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 475.84 E-value: 1.04e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:COG0593 81 NAIRN-----NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTLQDF 478
Cdd:COG0593 156 EWGLVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1315753892 479 F-STDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDH 545
Cdd:COG0593 236 LrAQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
239-462 |
6.41e-109 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 325.44 E-value: 6.41e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:pfam00308 81 DAIRD-----NKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLN 462
Cdd:pfam00308 156 QWGLVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
487-576 |
2.73e-37 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 133.02 E-value: 2.73e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 487 PTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKREIY 566
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 1315753892 567 NYVMELTVRL 576
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
487-554 |
7.36e-32 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 117.22 E-value: 7.36e-32
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1315753892 487 PTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTR 554
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2-218 |
2.99e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 2 AQDPLDAAAQAKRIWDAVLQVLRysssltSRDKGWLEDITPEA----VFGTTIVLRVSSKATQEAIQGPLSQPVL-SALQ 76
Cdd:PRK07764 502 APAGADDAATLRERWPEILAAVP------KRSRKTWAILLPEAtvlgVRGDTLVLGFSTGGLARRFASPGNAEVLvTALA 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 77 LVTNQEmFPAIKIVYPEQMAKQMAADQQNDQRASAMAGSAPGSGefrqvPGPAQDPYGDYQRQNSTGRSSSDTEARSNWR 156
Cdd:PRK07764 576 EELGGD-WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP-----AAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315753892 157 PETAGTAKT-PIVSANDFHQGTYVPMTLDMQAELSESSPATRSTASADADQQAEAERTTSRPA 218
Cdd:PRK07764 650 PEHHPKHVAvPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
239-578 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 571.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:PRK00149 66 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:PRK00149 146 NALRN-----NTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTLQDF 478
Cdd:PRK00149 221 EWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 479 FS-TDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISN 557
Cdd:PRK00149 301 LAaQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEK 380
|
330 340
....*....|....*....|.
gi 1315753892 558 EMQEKREIYNYVMELTVRLKQ 578
Cdd:PRK00149 381 LLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
232-576 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 526.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 232 ERDPQTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSE 311
Cdd:TIGR00362 97 PPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 312 EFTNEFIDALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFE 391
Cdd:TIGR00362 177 KFTNDFVNALRN-----NKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 392 SRLISRFDSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALA 471
Cdd:TIGR00362 252 DRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 472 EQTLQDFFS-TDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMH 550
Cdd:TIGR00362 332 KEALKDLLRaQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLH 411
|
330 340
....*....|....*....|....*.
gi 1315753892 551 AYTRISNEMQEKREIYNYVMELTVRL 576
Cdd:TIGR00362 412 AVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
239-545 |
1.04e-166 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 475.84 E-value: 1.04e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:COG0593 81 NAIRN-----NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTLQDF 478
Cdd:COG0593 156 EWGLVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1315753892 479 F-STDVEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDH 545
Cdd:COG0593 236 LrAQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-578 |
1.60e-153 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 454.28 E-value: 1.60e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 1 MAQDPLDAAAqakrIWDAVLQVLRYSS---SLTSRDKGWLEDITPEAVFGTTIVLRVSSKATQEAIQGPLSQPVLSALql 77
Cdd:PRK14086 1 MADVQADLAA----VWPRVLEQLLGEGdgqSVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETL-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 78 vtNQEMFPAIKIVYP-EQMAKQMAADQQNDQRASAMAGSAPGSGEFRQVPGPAQDP-----------------YGDYQRQ 139
Cdd:PRK14086 75 --SRELGRPIRIAITvDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDrppglprqdqlptarpaYPAYQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 140 NSTGRSSSDTEARSNWRPETAGTAKTPIVSANDFHQGTyVPMTLDMQAELSESSPATRS--TASADADQQAEAERTTSRP 217
Cdd:PRK14086 153 PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-ERDREPYDAGRPEYDQRRRDydHPRPDWDRPRRDRTDRPEP 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 218 ---AFTVPR-------FPMSQNRVERD------------------PQTHLNKNATFDTFVPGDSNRFARTVALAVAEGSG 269
Cdd:PRK14086 232 ppgAGHVHRggpgppeRDDAPVVPIRPsapgplaaqpapapgpgePTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPA 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 270 QDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFIDALQNstqgsGQIAEFNRRYRQVDVLLIDDI 349
Cdd:PRK14086 312 KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD-----GKGDSFRRRYREMDILLVDDI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 350 QFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRFDSGLTVDVKPPDRETRVAILRMMASMNGVSI 429
Cdd:PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNA 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 430 PNEVLDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTLQDFFSTDV--EIKPTDIISQVAKYFHLTFDDIVG 507
Cdd:PRK14086 467 PPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSapEITAAAIMAATADYFGLTVEDLCG 546
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1315753892 508 RTRTKNIALARQIAMYLAREMTSMSLVDIGEVFgGRDHTTVMHAYTRISNEMQEKREIYNYVMELTVRLKQ 578
Cdd:PRK14086 547 TSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKN 616
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
239-462 |
6.41e-109 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 325.44 E-value: 6.41e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFTNEFI 318
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 319 DALQNstqgsGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRF 398
Cdd:pfam00308 81 DAIRD-----NKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1315753892 399 DSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAVASLN 462
Cdd:pfam00308 156 QWGLVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
239-576 |
3.72e-74 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 243.20 E-value: 3.72e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTFVPGDSNRFARTVALAVA----EGSGQDFNPLCIYGSSGLGKTHLLNAIGNyaLVKDPSLKVRYVNSEEFT 314
Cdd:PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPFNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 315 NEFIDALQnstqgSGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRL 394
Cdd:PRK12422 182 EHLVSAIR-----SGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 395 ISRFDSGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALT----RVtAVASLNNQPVTTAL 470
Cdd:PRK12422 257 ISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTllakRV-AYKKLSHQLLYVDD 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 471 AEQTLQDFFSTD--VEIKPTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFgGRDHTTV 548
Cdd:PRK12422 336 IKALLHDVLEAAesVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTV 414
|
330 340
....*....|....*....|....*....
gi 1315753892 549 MHAYTRISNEMQE-KREIYNYVMELTVRL 576
Cdd:PRK12422 415 ISSIRAISQKLEEdDRDISMAIQEITKRL 443
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
487-576 |
2.73e-37 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 133.02 E-value: 2.73e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 487 PTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKREIY 566
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 1315753892 567 NYVMELTVRL 576
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
487-555 |
2.03e-35 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 127.13 E-value: 2.03e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1315753892 487 PTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRI 555
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
487-554 |
7.36e-32 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 117.22 E-value: 7.36e-32
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1315753892 487 PTDIISQVAKYFHLTFDDIVGRTRTKNIALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTR 554
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
243-476 |
1.36e-26 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 108.05 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 243 ATFDTFVPGdSNRFARTVALAVAEGSGQDFnpLCIYGSSGLGKTHLLNAIGNYALVKDPSlkVRYVNSEEFTNEFIDALQ 322
Cdd:TIGR03420 12 PTFDNFYAG-GNAELLAALRQLAAGKGDRF--LYLWGESGSGKSHLLQAACAAAEERGKS--AIYLPLAELAQADPEVLE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 323 NstqgsgqiAEfnrryrQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRFDSGL 402
Cdd:TIGR03420 87 G--------LE------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1315753892 403 TVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEGALTRVTAvASLNNQ-PVTTALAEQTLQ 476
Cdd:TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDR-ASLAAKrKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
272-400 |
8.83e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 77.57 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 272 FNPLCIYGSSGLGKTHLLNAIGNYAlvKDPSLKVRYVNSEEFTNEFIDALQNSTQGSGQIAEFNrRYRQVDVLLIDDIQF 351
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA-EKAKPGVLFIDEIDS 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1315753892 352 LG-GKEATLDQFFHTFNALHDANKRIVIASDVAPKNLKGFESRLISRFDS 400
Cdd:cd00009 96 LSrGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDI 145
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
243-478 |
1.07e-12 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 67.69 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 243 ATFDTFVPGdSNRFARTVALAVAEGSGQDfNPLCIYGSSGLGKTHLLNAIGNYALVKDpsLKVRYvnseeftnefIDAlq 322
Cdd:PRK08903 15 PTFDNFVAG-ENAELVARLRELAAGPVAD-RFFYLWGEAGSGRSHLLQALVADASYGG--RNARY----------LDA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 323 nstQGSGQIAEFNRRyrqVDVLLIDDIQFLGGKE-ATLdqfFHTFNALHDANKRI-VIASDVAPKNLKGFESrLISRFDS 400
Cdd:PRK08903 79 ---ASPLLAFDFDPE---AELYAVDDVERLDDAQqIAL---FNLFNRVRAHGQGAlLVAGPAAPLALPLRED-LRTRLGW 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 401 GLTVDVKPPDRETRVAILRMMASMNGVSIPNEVLDLIAERFTENIRELEG---ALTRvtavASLNNQ-PVTTALAEQTLQ 476
Cdd:PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMAlldALDR----YSLEQKrPVTLPLLREMLA 224
|
..
gi 1315753892 477 DF 478
Cdd:PRK08903 225 QP 226
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
238-380 |
1.15e-12 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 67.88 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 238 HLNKNATFDTFVPGDSNRFARTVALAVAEGsgqDF----NPLCIYGSSGLGKTHLLNAIGNYALVKDpsLKVRYVNseef 313
Cdd:COG1484 64 RFPAAKTLEDFDFDAQPGLDRRQILELATL---DFiergENLILLGPPGTGKTHLAIALGHEACRAG--YRVRFTT---- 134
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1315753892 314 TNEFIDALQNStQGSGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDaNKRIVIAS 380
Cdd:COG1484 135 APDLVNELKEA-RADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
273-410 |
7.90e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 7.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 273 NPLCIYGSSGLGKTHLLNAIGNYAlvKDPSLKVRYVNSEEFTNEFIDALQN---------STQGSGQIAEFNR-RYRQVD 342
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLLLiivggkkasGSGELRLRLALALaRKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315753892 343 VLLIDDIQFLGGKEATLDQFFH-----TFNALHDANKRIVIASdvapkNLKGFESRLISRFDSGLTVDVKPPD 410
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTT-----NDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
226-397 |
9.16e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 53.63 E-value: 9.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 226 MSQNRVER----DPQTHLNKNATFDTFVPG-------DSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGN 294
Cdd:PRK06921 60 VEQRKIERllkaSEITEAFRKLTFKNFKTEgkpqaikDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAAN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 295 YaLVKDPSLKVRYVNSEEFTNEFIDALQnstqgsgQIAEFNRRYRQVDVLLIDDI-QFLGGKE-AT---LDQFFHTFNAL 369
Cdd:PRK06921 140 E-LMRKKGVPVLYFPFVEGFGDLKDDFD-------LLEAKLNRMKKVEVLFIDDLfKPVNGKPrATewqIEQMYSVLNYR 211
|
170 180
....*....|....*....|....*...
gi 1315753892 370 HDANKRIVIASDVAPKNLKGFESRLISR 397
Cdd:PRK06921 212 YLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
490-555 |
2.39e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 49.78 E-value: 2.39e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1315753892 490 IISQVAKYFHLTFDDIVGRTRTKNIAL-ARQIAMYLAREMTSMSLVDIGEVFgGRDHTTVMHAYTRI 555
Cdd:PRK06030 28 VIDLLALAFGVSGAEIASPLRGRREVSrIRQIAMYVAHVSLGWPMNEVALAF-GRDRTTVGHACHTV 93
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
275-399 |
2.94e-07 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 52.59 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 275 LCIYGSSGLGKTHLLNAIGNYALvkDPSLKVRYVNSEEFTNEFIDALQNSTQGSGQIAEFnrrYRQVDVLLIDDiqfLGG 354
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADELIEILREIRFNNDKELEEVYDL---LINCDLLIIDD---LGT 257
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1315753892 355 K---EATLDQFFHTFNALHDANKRIVIASDVAPKNLKGF-----ESRLISRFD 399
Cdd:PRK06835 258 EkitEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTyseriSSRLLGNFT 310
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
277-527 |
5.08e-07 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 51.79 E-value: 5.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 277 IYGSSGLGKTHLLNAIGNYALVKDPSLKVRYVNSEEFT-NEFIDALQNSTQGSGqiaefnRRyrqvdVLLIDDIQFLGGK 355
Cdd:COG1466 9 LYGEEPLLIDEAADALRAAALAEDDGFNRTRLDGAETDwAELLDEAQTLSLFGE------RR-----LVIVRNAEFLKKP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 356 EATLDQFFHTFNALHDANKRIVIASDVAPKnlkgfeSRLISRFD-SGLTVDVKPPDRETRVAILRMMASMNGVSIPNEVL 434
Cdd:COG1466 78 GEGLEALEAYLANPPPDTVLVLTAGKLDKR------KKLFKALEkAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 435 DLIAERFTENIRELEGALTRVtAVASLNNQPVTTAlaeqtlqdffstDVEikptDIISQVAKY--FHLTfDDIVgrtrTK 512
Cdd:COG1466 152 QLLAERVGGDLLALAQELEKL-ALYAGDGGTITLE------------DVE----ALVGDSAEFnvFDLA-DALL----AG 209
|
250
....*....|....*
gi 1315753892 513 NIALARQIAMYLARE 527
Cdd:COG1466 210 DAARALRILRRLLAE 224
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
277-440 |
8.60e-06 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 48.31 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 277 IYGSSGLGKT----HLLNAIGNYALVKDPSLKVRYVNSEEFT----------NEFIDALQNSTQGSGQIAEFNRRYRQVD 342
Cdd:COG1474 56 IYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYVNCRQAStryrvlsrilEELGSGEDIPSTGLSTDELFDRLYEALD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 343 ------VLLIDDIQFLGGKEA--TLDQFFHTFNALHDANKRIV-IASDvaPKNLKGFESRLISRFdSGLTVDVKPPDRET 413
Cdd:COG1474 136 erdgvlVVVLDEIDYLVDDEGddLLYQLLRANEELEGARVGVIgISND--LEFLENLDPRVKSSL-GEEEIVFPPYDADE 212
|
170 180 190
....*....|....*....|....*....|
gi 1315753892 414 RVAILRMMASM---NGVsIPNEVLDLIAER 440
Cdd:COG1474 213 LRDILEDRAELafyDGV-LSDEVIPLIAAL 241
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
275-475 |
1.38e-05 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 46.37 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 275 LCIYGSSGLGKTHLLNAIGNYALVkdpslkvrYVNSEEFTNEFIdalqnstqgsgqiaefnrrYRQVDVLLIDDIQflGG 354
Cdd:PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNA--------YIIKDIFFNEEI-------------------LEKYNAFIIEDIE--NW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 355 KEATLdqfFHTFNALHDANKRIVIASDVAPKNLKgfESRLISRFDSGLTVDVKPPDRETrVAILRMMA-SMNGVSIPNEV 433
Cdd:PRK06620 98 QEPAL---LHIFNIINEKQKYLLLTSSDKSRNFT--LPDLSSRIKSVLSILLNSPDDEL-IKILIFKHfSISSVTISRQI 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1315753892 434 LDLIAERFTENIRELEGALTRVTAVASLNNQPVTTALAEQTL 475
Cdd:PRK06620 172 IDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
277-470 |
1.89e-05 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 46.48 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 277 IYGSSGLGKTHllnAIGNYALVKDPSLKVR---YVNSEEFTNEFIDALqNSTQGSGQIAEFNRR-----YRQVDVLLIDD 348
Cdd:COG2842 55 VYGESGVGKTT---AAREYANRNPNVIYVTaspSWTSKELLEELAEEL-GIPAPPGTIADLRDRilerlAGTGRLLIIDE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 349 IQFLGGKeaTLDQffhtFNALHDANK--RIVIASDVAPKNLKGFEsRLISRFDSGLTVDvKPPDRETRvAILRmmaSMNG 426
Cdd:COG2842 131 ADHLKPK--ALEE----LRDIHDETGvgVVLIGMERLPAKLKRYE-QLYSRIGFWVEFK-PLSLEDVR-ALAE---AWGE 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1315753892 427 VSIPnEVLDLIAERFTENIRELEGALTRVTAVASLNN-QPVTTAL 470
Cdd:COG2842 199 LTDP-DLLELLHRITRGNLRRLDRTLRLAARAAKRNGlTKITLDH 242
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
241-349 |
2.51e-05 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 46.40 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 241 KNATFDTFvpgDSNRFARTVALAVAEGSGQDFNP------LCIYGSSGLGKTHLLNAIGNYalvkdpsLKVRYVNSE-EF 313
Cdd:PRK08939 122 LQASLADI---DLDDRDRLDALMAALDFLEAYPPgekvkgLYLYGDFGVGKSYLLAAIANE-------LAKKGVSSTlLH 191
|
90 100 110
....*....|....*....|....*....|....*.
gi 1315753892 314 TNEFIDALQNSTQgSGQIAEFNRRYRQVDVLLIDDI 349
Cdd:PRK08939 192 FPEFIRELKNSIS-DGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
228-397 |
5.88e-05 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 45.01 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 228 QNRVERDPQTHLN----KNATFDTFVPGDSNRFARTVALAVAEG---SGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKD 300
Cdd:PRK08116 63 QRRIERLKSNSLLdekfRNSTFENFLFDKGSEKAYKIARKYVKKfeeMKKENVGLLLWGSVGTGKTYLAACIANELIEKG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 301 psLKVRYVNseefTNEFIDALQNSTQGSGQIA--EFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHDANKRIVI 378
Cdd:PRK08116 143 --VPVIFVN----FPQLLNRIKSTYKSSGKEDenEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIV 216
|
170 180
....*....|....*....|
gi 1315753892 379 ASDVAPKNLK-GFESRLISR 397
Cdd:PRK08116 217 TTNLSLEELKnQYGKRIYDR 236
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
228-349 |
6.86e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.83 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 228 QNRVE----RDPQTHLNKNATFDTF-VPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPS 302
Cdd:PRK12377 52 QLRVEkilnRSGIQPLHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS 131
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1315753892 303 LKVRYVnseeftNEFIDALQNSTQGSGQIAEFNRRYRQVDVLLIDDI 349
Cdd:PRK12377 132 VIVVTV------PDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
275-486 |
1.26e-04 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 44.52 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 275 LCIYGSSGLGKTHLLNAIGNYA----LVKDPS-LKVRYV-NSEEFTNEFIDALQNSTQGsgqiaefnrryrqvdVLLIDD 348
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELglplIEVDLSdLVSKYVgETEKNLREVFDKARGLAPC---------------VLFIDE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 349 IQFLGGKEATLDQFFHT--FNAL-----HDANKRIVIA-------SDVApknlkgfesrLISRFDsgLTVDVKPPDRETR 414
Cdd:COG0464 259 ADALAGKRGEVGDGVGRrvVNTLltemeELRSDVVVIAatnrpdlLDPA----------LLRRFD--EIIFFPLPDAEER 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1315753892 415 VAILRMMASMNGVSiPNEVLDLIAERfTENI--RELEGALTRVT-AVASLNNQPVTTALAEQTLQDffsTDVEIK 486
Cdd:COG0464 327 LEIFRIHLRKRPLD-EDVDLEELAEA-TEGLsgADIRNVVRRAAlQALRLGREPVTTEDLLEALER---EDIFLK 396
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2-218 |
2.99e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 2 AQDPLDAAAQAKRIWDAVLQVLRysssltSRDKGWLEDITPEA----VFGTTIVLRVSSKATQEAIQGPLSQPVL-SALQ 76
Cdd:PRK07764 502 APAGADDAATLRERWPEILAAVP------KRSRKTWAILLPEAtvlgVRGDTLVLGFSTGGLARRFASPGNAEVLvTALA 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 77 LVTNQEmFPAIKIVYPEQMAKQMAADQQNDQRASAMAGSAPGSGefrqvPGPAQDPYGDYQRQNSTGRSSSDTEARSNWR 156
Cdd:PRK07764 576 EELGGD-WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP-----AAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1315753892 157 PETAGTAKT-PIVSANDFHQGTYVPMTLDMQAELSESSPATRSTASADADQQAEAERTTSRPA 218
Cdd:PRK07764 650 PEHHPKHVAvPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712
|
|
| Ras_like_GTPase |
cd00882 |
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ... |
276-379 |
7.90e-04 |
|
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.
Pssm-ID: 206648 [Multi-domain] Cd Length: 161 Bit Score: 40.52 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 276 CIYGSSGLGKTHLLNAI--GNYALV-------KDPSLKVRYVNSEEFTNEFID-ALQNSTQGSGQIAEFNRRYRQVD--V 343
Cdd:cd00882 1 VVVGRGGVGKSSLLNALlgGEVGEVsdvpgttRDPDVYVKELDKGKVKLVLVDtPGLDEFGGLGREELARLLLRGADliL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 1315753892 344 LLIDdiqfLGGKEATLDQFFHTFNALHDANKRIVIA 379
Cdd:cd00882 81 LVVD----STDRESEEDAKLLILRRLRKEGIPIILV 112
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
275-377 |
1.71e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 275 LCIYGSSGLGKTHLLNAIGN-YALVKDPSLKVRYVNS-------EEFTNEF---IDALQNSTQGSGQIAEFNRRYRQVDV 343
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEqLPEVRDSVVFVDLPSGtspkdllRALLRALglpLSGRLSKEELLAALQQLLLALAVAVV 87
|
90 100 110
....*....|....*....|....*....|....
gi 1315753892 344 LLIDDIQFLGgkeatlDQFFHTFNALHDANKRIV 377
Cdd:pfam13401 88 LIIDEAQHLS------LEALEELRDLLNLSSKLL 115
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
275-399 |
5.48e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.19 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 275 LCIYGSSGLGKTHLLNAIGNYAlvkdpSLKVRYVNSEEFTNEFIDAlqnstqGSGQIAEFNRRYRQV--DVLLIDDIQFL 352
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGSELVSKYVGE------SEKRLRELFEAAKKLapCVIFIDEIDAL 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1315753892 353 GGKEATLDQFFH--TFNAL--------HDANKRIVIAsdvAPKNLKGFESRLISRFD 399
Cdd:pfam00004 70 AGSRGSGGDSESrrVVNQLlteldgftSSNSKVIVIA---ATNRPDKLDPALLGRFD 123
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
239-349 |
8.65e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 38.21 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315753892 239 LNKNATFDTF-VPGDSNRFARTVALAVAEGSGQDFNPLCIYGSSGLGKTHLLNAIGNYALVKDPSlkVRYVNSEEFTNEF 317
Cdd:PRK07952 65 LHQNCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS--VLIITVADIMSAM 142
|
90 100 110
....*....|....*....|....*....|..
gi 1315753892 318 IDALQNSTQGSGQIAefnRRYRQVDVLLIDDI 349
Cdd:PRK07952 143 KDTFSNSETSEEQLL---NDLSNVDLLVIDEI 171
|
|
| |
