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Conserved domains on  [gi|1309054213|gb|PKP42207|]
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hypothetical protein CVT93_05955 [Bacteroidetes bacterium HGW-Bacteroidetes-10]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 81-340 2.94e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 117.91  E-value: 2.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYE 160
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-EALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 161 IALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIAL 240
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 241 NPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYcNEANLGMA 320
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                         250       260
                  ....*....|....*....|
gi 1309054213 321 YILMLQLDHFGSLVYLRRIV 340
Cdd:COG2956   253 DLLERKEGLEAALALLERQL 272
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 81-340 2.94e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 117.91  E-value: 2.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYE 160
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-EALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 161 IALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIAL 240
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 241 NPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYcNEANLGMA 320
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                         250       260
                  ....*....|....*....|
gi 1309054213 321 YILMLQLDHFGSLVYLRRIV 340
Cdd:COG2956   253 DLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 81-325 4.31e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 4.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIV-----NREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHTAAQDYiD 155
Cdd:TIGR02917 433 ADLLLIlsylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-Q 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 156 SAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFD 235
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 236 YAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEA 315
Cdd:TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

                         250
                  ....*....|
gi 1309054213 316 NLGMAYILML 325
Cdd:TIGR02917 672 QIGLAQLLLA 681
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 184-255 6.98e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.98  E-value: 6.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 184 AFCYER-------NGKFAESLDYYEQFL--DEDPFNDN-VWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAI 253
Cdd:PRK02603   35 AFVYYRdgmsaqaDGEYAEALENYEEALklEEDPNDRSyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114


                  ..
gi 1309054213 254 VY 255
Cdd:PRK02603  115 IY 116
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 148-210 1.76e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 1.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1309054213 148 TAAQDYIDSAEYEIALEYLFEARRYSDEDP---ELLNDIAFCYERNGKFAESLDYYEQFLDEDPFN 210
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 81-340 2.94e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 117.91  E-value: 2.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYE 160
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA-EALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 161 IALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIAL 240
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 241 NPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYcNEANLGMA 320
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                         250       260
                  ....*....|....*....|
gi 1309054213 321 YILMLQLDHFGSLVYLRRIV 340
Cdd:COG2956   253 DLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 111-340 4.51e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 106.35  E-value: 4.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 111 FFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERN 190
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETV-EAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 191 GKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEE 270
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 271 FLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRIV 340
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 68-309 6.87e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 102.89  E-value: 6.87e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  68 EQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYH 147
Cdd:COG2956    36 ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA-EALR 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 148 TAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRF 227
Cdd:COG2956   115 LLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDY 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 228 DKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLfAILGIADAFLAMDNFKEAQRYYNDALA 307
Cdd:COG2956   195 EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEGLEAALALLERQLR 273


                  ..
gi 1309054213 308 LD 309
Cdd:COG2956   274 RH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
175-408 2.02e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.16  E-value: 2.02e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 175 EDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIV 254
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 255 YVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLV 334
Cdd:COG0457    86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1309054213 335 YLRRIVGNEGIEFSVIAHQLRLTFKRTNLPEFLLYHTIAQYYLHNREQFLKNMELLAAIDNLWVRKIYDLIPNL 408
Cdd:COG0457   166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
136-311 4.47e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 4.47e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 136 SLSPEDAsDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWF 215
Cdd:COG0457     2 ELDPDDA-EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 216 NVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNF 295
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                         170
                  ....*....|....*.
gi 1309054213 296 KEAQRYYNDALALDKY 311
Cdd:COG0457   161 EEALELLEKLEAAALA 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
105-328 1.48e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.37  E-value: 1.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 105 PRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIA 184
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA-EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 185 FCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRG 264
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1309054213 265 IETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLD 328
Cdd:COG0457   164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLAL 227
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 112-339 9.82e-18

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 85.43  E-value: 9.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 112 FLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHTAAQdyidsAEYEIALEYLFEARRYSDEDPELlndiafcyERNG 191
Cdd:COG3914    26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAG-----EAAAAAAALLLLAALLELAALLL--------QALG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 192 KFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEF 271
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1309054213 272 LKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRI 339
Cdd:COG3914   173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-309 1.30e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.08  E-value: 1.30e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 174 DEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAI 253
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1309054213 254 VYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALD 309
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 81-325 4.31e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 4.31e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIV-----NREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHTAAQDYiD 155
Cdd:TIGR02917 433 ADLLLIlsylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-Q 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 156 SAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFD 235
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 236 YAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEA 315
Cdd:TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671

                         250
                  ....*....|
gi 1309054213 316 NLGMAYILML 325
Cdd:TIGR02917 672 QIGLAQLLLA 681
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 126-322 3.98e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 3.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 126 AAREAIQKAASLSPEDASDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLD 205
Cdd:COG3914    61 ALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 206 EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGI 285
Cdd:COG3914   141 LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1309054213 286 ADAFLAMDNFKEAQRYYNDALALDKYCNE-ANLGMAYI 322
Cdd:COG3914   221 LFALRQACDWEVYDRFEELLAALARGPSElSPFALLYL 258
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 195-309 1.48e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 72.73  E-value: 1.48e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 195 ESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKH 274
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1309054213 275 EPGNLFAILGIADAFLAMDNFKEAQRYYNDALALD 309
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
126-307 4.45e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 74.18  E-value: 4.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 126 AAREAIQKAASLSPEDASDMYHTAAQDYIDSAEYEIALEYLFEARRYSDeDPELLNDIAFCYERNGKFAESLDYYEQFLD 205
Cdd:COG4785    23 AILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPD-LAQLYYERGVAYDSLGDYDLAIADFDQALE 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 206 EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILG- 284
Cdd:COG4785   102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWl 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1309054213 285 -------------------IADAFLAMDNFKEAQRYYNDALA 307
Cdd:COG4785   182 ylaerkldpekalallledWATAYLLQGDTEEARELFKLALA 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
204-328 1.01e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 204 LDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAIL 283
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1309054213 284 GIADAFLAMDNFKEAQRYYNDALALDKYCNEA--NLGMAYILMLQLD 328
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEAlyNLGLALLELGRYD 127
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 150-278 1.69e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.22  E-value: 1.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 150 AQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDK 229
Cdd:COG4783    11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1309054213 230 SIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGN 278
Cdd:COG4783    91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 112-244 4.21e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.07  E-value: 4.21e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 112 FLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNG 191
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNP-EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1309054213 192 KFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPAN 244
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 162-278 3.46e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.18  E-value: 3.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 162 ALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALN 241
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1309054213 242 PANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGN 278
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 126-245 6.51e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 62.72  E-value: 6.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 126 AAREAIQKAASLSPEDASDMYhTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLD 205
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWL-LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1309054213 206 EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANS 245
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 126-276 7.92e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.06  E-value: 7.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 126 AAREAIQKAASLSPEDASDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLD 205
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1309054213 206 EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEP 276
Cdd:COG5010    83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 79-208 8.27e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.52  E-value: 8.27e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  79 KYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAE 158
Cdd:COG4783     9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP-EARLNLGLALLKAGD 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1309054213 159 YEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDP 208
Cdd:COG4783    88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 213-340 1.27e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 1.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 213 VWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAM 292
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1309054213 293 DNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRIV 340
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 92-212 1.67e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.56  E-value: 1.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  92 RAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHtAAQDYIDSAEYEIALEYLFEARR 171
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD-LAEALLAAGDTEEAEELLERALA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1309054213 172 YSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDN 212
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 48-216 3.85e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.01  E-value: 3.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  48 NHYLNEGDDWMVSEVARMGYEQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAA 127
Cdd:COG3914    52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEA 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 128 REAIQKAASLSPEDAsDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDED 207
Cdd:COG3914   132 LAALRRALALNPDFA-EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210


                  ....*....
gi 1309054213 208 PFNDNVWFN 216
Cdd:COG3914   211 PDNADAHSN 219
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 134-328 1.07e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 134 AASLSPEDASDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNV 213
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 214 WFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMD 293
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1309054213 294 NFKEAQRYYNDALALDKYCNEA--NLGMAYILMLQLD 328
Cdd:COG3914   161 RLEEAIAALRRALELDPDNAEAlnNLGNALQDLGRLE 197
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 231-340 1.90e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 1.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 231 IEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDK 310
Cdd:COG4235     3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 1309054213 311 YCNEANLGMAYILMLQLDHFGSLVYLRRIV 340
Cdd:COG4235    83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
220-309 1.93e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.10  E-value: 1.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 220 IHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIEtFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQ 299
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|
gi 1309054213 300 RYYNDALALD 309
Cdd:COG3063    80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
186-276 2.05e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.10  E-value: 2.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 186 CYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIeAFDYAIALNPANSSVLYNKAIVYVNTENYKRGI 265
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|.
gi 1309054213 266 ETFEEFLKHEP 276
Cdd:COG3063    80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 158-310 4.22e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.05  E-value: 4.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 158 EYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYA 237
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1309054213 238 IALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDK 310
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 84-344 6.88e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 61.25  E-value: 6.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  84 LIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPeDASDMYHTAAQDYIDSAEYEIAL 163
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKAL 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 164 EYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDY------- 236
Cdd:TIGR02917 452 AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKvltidpk 531

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 237 ---------------------------AIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAF 289
Cdd:TIGR02917 532 nlrailalaglylrtgneeeavawlekAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1309054213 290 LAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRIVGNEG 344
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
153-317 9.60e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 9.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 153 YIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDeDPFNDNVWFNVGTIHARELRFDKSIE 232
Cdd:COG4785    16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALA-LPDLAQLYYERGVAYDSLGDYDLAIA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 233 AFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYC 312
Cdd:COG4785    95 DFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174


                  ....*
gi 1309054213 313 NEANL 317
Cdd:COG4785   175 PERAL 179
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 139-324 2.64e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.33  E-value: 2.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 139 PEDASDMYHTAAQDYIDSAEYEIALEYLF-------EARRYSDE----DPE------LLNDIAFCyerNGKFAESLDYYE 201
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAKLGLAQLAlaenrfdEARALIDEvltaDPGnvdallLKGDLLLS---LGNIELALAAYR 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 202 QFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFA 281
Cdd:TIGR02917 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1309054213 282 ILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILM 324
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 61-355 3.53e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.86  E-value: 3.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  61 EVARMGYEQ----HPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAAS 136
Cdd:TIGR02917 142 ELAQKSYEQalaiDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 137 LSPEDASDMYhTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFN 216
Cdd:TIGR02917 222 LRPNNIAVLL-ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLL 300

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 217 VGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGN--LFAILGIadAFLAMDN 294
Cdd:TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDpaALSLLGE--AYLALGD 378

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1309054213 295 FKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRIVGNEG----IEFSVIAHQLR 355
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPelgrADLLLILSYLR 443
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 185-283 5.31e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.76  E-value: 5.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 185 FCYERNGKFAESLDYYEQFLD---EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSV---LYNKAIVYVNT 258
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLEL 80

                          90       100
                  ....*....|....*....|....*
gi 1309054213 259 ENYKRGIETFEEFLKHEPGNLFAIL 283
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAAKE 105
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 91-242 6.25e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 6.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  91 DRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHTAAQDYIDSAEYEIALEYLFEAR 170
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309054213 171 RYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNP 242
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 184-255 6.98e-08

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 51.98  E-value: 6.98e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 184 AFCYER-------NGKFAESLDYYEQFL--DEDPFNDN-VWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAI 253
Cdd:PRK02603   35 AFVYYRdgmsaqaDGEYAEALENYEEALklEEDPNDRSyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114


                  ..
gi 1309054213 254 VY 255
Cdd:PRK02603  115 IY 116
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 81-309 1.28e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.99  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  81 ADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAARE---AIQKAASLSPEDASDMYHTAAQDYIDSA 157
Cdd:COG3071    92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEllpALRKHKALSAEEAQALERRAYLGLLRQA 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 158 --EYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPfNDNVWFNVGTIHARELrfDKSIEAFD 235
Cdd:COG3071   172 arDAEALKALWKALPRAERRDPELAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRLQGGDP--AKQLKRAE 248

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1309054213 236 YAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPgNLFAILGIADAFLAMDNFKEAQRYYNDALALD 309
Cdd:COG3071   249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALA 321
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 154-309 2.50e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 53.16  E-value: 2.50e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  154 IDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNV--WFNVGTIHarelRFDKSI 231
Cdd:PRK11447   280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLLKVN----RYWLLI 355

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1309054213  232 EAFDYAI-ALNPANSSVLYNKAivyvntenykRGIetfeeflkhEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALD 309
Cdd:PRK11447   356 QQGDAALkANNLAQAERLYQQA----------RQV---------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 90-330 3.83e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 3.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  90 IDRAKEILA------------SLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSA 157
Cdd:TIGR02917  26 IEAAKSYLQknkykaaiiqlkNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLARAYLLQG 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 158 EYEIALEYLfearrysdEDPELLNDiafcyernGKFAESLDYyeqfldedpfndnvwfnVGTIHARELRFDKSIEAFDYA 237
Cdd:TIGR02917 105 KFQQVLDEL--------PGKTLLDD--------EGAAELLAL-----------------RGLAYLGLGQLELAQKSYEQA 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 238 IALNPANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANL 317
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                         250
                  ....*....|...
gi 1309054213 318 GMAYILmLQLDHF 330
Cdd:TIGR02917 232 ALATIL-IEAGEF 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-207 4.70e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 4.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  46 LINHYLNEGDDWMVSEVARMGYEQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHE 125
Cdd:COG2956   116 LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 126 AAREAIQKAASLSPEDASDMYHtAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNdIAFCYERNGKFAESLDYYEQFLD 205
Cdd:COG2956   196 EAIAALERALEQDPDYLPALPR-LAELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQLR 273


                  ..
gi 1309054213 206 ED 207
Cdd:COG2956   274 RH 275
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 68-178 5.96e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 5.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  68 EQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYH 147
Cdd:COG4235    11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1309054213 148 tAAQDYIDSAEYEIALEYLFEARRYSDEDPE 178
Cdd:COG4235    91 -LGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 61-273 6.45e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 6.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  61 EVARMGYEQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPE 140
Cdd:TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 141 DASDMYHTAAQ------------------DYIDSAEYEIALEYLFEARRYSDE--------------DPELLNDIAFCYe 188
Cdd:TIGR02917 736 SQNAIKLHRALlasgntaeavktleawlkTHPNDAVLRTALAELYLAQKDYDKaikhyqtvvkkapdNAVVLNNLAWLY- 814

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 189 RNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETF 268
Cdd:TIGR02917 815 LELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894


                  ....*
gi 1309054213 269 EEFLK 273
Cdd:TIGR02917 895 DKLLN 899
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 93-338 8.55e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.14  E-value: 8.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  93 AKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASDMYHTAAQDYIDSAEYEIALEYlfeaRRY 172
Cdd:TIGR00990 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY----QKS 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 173 SDEDPELLN---DIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALnpanssvly 249
Cdd:TIGR00990 426 IDLDPDFIFshiQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--------- 496

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 250 nkaivyvntENYKRGIETfeeflkhepgNLFAILGIADA-FLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLD 328
Cdd:TIGR00990 497 ---------EKETKPMYM----------NVLPLINKALAlFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557

                         250
                  ....*....|
gi 1309054213 329 HFGSLVYLRR 338
Cdd:TIGR00990 558 VDEALKLFER 567
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 158-244 8.65e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.90  E-value: 8.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 158 EYEIALEYLFEARRYsDEDP----ELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIH------------ 221
Cdd:PRK02603   50 EYAEALENYEEALKL-EEDPndrsYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaeeagd 128

                          90       100
                  ....*....|....*....|....*
gi 1309054213 222 --ARELRFDKSIEAFDYAIALNPAN 244
Cdd:PRK02603  129 qdEAEALFDKAAEYWKQAIRLAPNN 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 243-340 3.11e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 3.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 243 ANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYI 322
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90
                  ....*....|....*...
gi 1309054213 323 LMLQLDHFGSLVYLRRIV 340
Cdd:COG4783    82 LLKAGDYDEALALLEKAL 99
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
153-243 3.64e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 153 YIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKFAESLDyYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIE 232
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1309054213 233 AFDYAIALNPA 243
Cdd:COG3063    81 YLERALELDPS 91
ycf3 CHL00033
photosystem I assembly protein Ycf3
 158-244 4.69e-06

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 46.54  E-value: 4.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 158 EYEIALEYLFEARRYsDEDPE----LLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTI-HAR--------- 223
Cdd:CHL00033   50 EYAEALQNYYEAMRL-EIDPYdrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIcHYRgeqaieqgd 128

                          90       100
                  ....*....|....*....|....*
gi 1309054213 224 ----ELRFDKSIEAFDYAIALNPAN 244
Cdd:CHL00033  129 seiaEAWFDQAAEYWKQAIALAPGN 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 87-328 9.58e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 9.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  87 NREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDasdmyhtaaqdyidsaeyeialeyl 166
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS------------------------- 634

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 167 fearrysdedPELLNDIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSS 246
Cdd:TIGR02917 635 ----------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 247 VLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAIlGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQ 326
Cdd:TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ 783


                  ..
gi 1309054213 327 LD 328
Cdd:TIGR02917 784 KD 785
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 226-307 1.51e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.83  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 226 RFDKSIEAFDYAIALNPANS---SVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLF---AILGIADAFLAMDNFKEAQ 299
Cdd:COG1729     8 DYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKAR 87


                  ....*...
gi 1309054213 300 RYYNDALA 307
Cdd:COG1729    88 ATLEELIK 95
ycf3 CHL00033
photosystem I assembly protein Ycf3
 184-299 2.18e-05

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 44.61  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 184 AFCYERN-------GKFAESL-DYYEQF-LDEDPFNDN-VWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAI 253
Cdd:CHL00033   35 AFTYYRDgmsaqseGEYAEALqNYYEAMrLEIDPYDRSyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1309054213 254 VYvntenYKRGIETFEEFLKHEPGNLF---------AILgiadafLAMDNFKEAQ 299
Cdd:CHL00033  115 IC-----HYRGEQAIEQGDSEIAEAWFdqaaeywkqAIA------LAPGNYIEAQ 158
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
124-208 2.49e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 2.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 124 HEAAREAIQKAASLSPEDAsDMYHTAAQDYIDSAEYEIALEYLfEARRYSDEDPELLNDIAFCYERNGKFAESLDYYEQF 203
Cdd:COG3063     8 LEEAEEYYEKALELDPDNA-DALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85


                  ....*
gi 1309054213 204 LDEDP 208
Cdd:COG3063    86 LELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 68-278 4.14e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  68 EQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDASdMYH 147
Cdd:TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-GFE 707

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 148 TAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNdIAFCYERNGKFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRF 227
Cdd:TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1309054213 228 DKSIEAFDYAIALNPANSSVLYNKAIVYVNTENyKRGIETFEEFLKHEPGN 278
Cdd:TIGR02917 787 DKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNI 836
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 192-346 6.68e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 6.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 192 KFAESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANSSVLYNKAIVYVNTENYKRGIETFEEF 271
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1309054213 272 LKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDHFGSLVYLRRIVGNEGIE 346
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 140-303 1.03e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 43.72  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 140 EDASDMYhTAAQDYIDSAEYEIALEYLFEARR---YSDEDPELLNDIAFCYERNGKFAESLDYYEQFLD---EDPFNDNV 213
Cdd:COG4105    30 WDAEELY-EEAKEALEKGDYEKAIKLFEELEPrypGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKlypNSPNADYA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 214 WFNVGTIH-ARELRFD-------KSIEAFDYAIALNPaNSS----------VLYNK--------AIVYVNTENYKRGIET 267
Cdd:COG4105   109 YYLRGLSYyEQSPDSDrdqtstrKAIEAFQELINRYP-DSEyaedakkridELRDKlarkelevARYYLKRGAYVAAINR 187

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1309054213 268 FEEFLKHEPGNLF---AILGIADAFLAMDNFKEAQRYYN 303
Cdd:COG4105   188 FQNVLEDYPDTPAveeALYLLVEAYYALGRYDEAQDAAA 226
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
254-340 1.13e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 254 VYVNTENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYyNDALALDKYCNEANLGMAYILMLQLDHFGSL 333
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                  ....*..
gi 1309054213 334 VYLRRIV 340
Cdd:COG3063    80 AYLERAL 86
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 255-380 2.26e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 43.26  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 255 YVNTENYKRGIETFEEFLKHEPGNLFAILG-----IADAFLAMDNFKEAQRYYNDALALDKYCNEANLGMAYILMLQLDH 329
Cdd:PRK11788  151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAhfyceLAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1309054213 330 FGSLVYLRRIVgNEGIEF-SVIAHQLRLTFKRTN-LPEFLLYhtIAQYYLHNR 380
Cdd:PRK11788  231 AAAIEALERVE-EQDPEYlSEVLPKLMECYQALGdEAEGLEF--LRRALEEYP 280
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 50-141 2.26e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  50 YLNEGDDWMVSEVARMGYEQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAARE 129
Cdd:COG4783    48 LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127

                          90
                  ....*....|..
gi 1309054213 130 AIQKAASLSPED 141
Cdd:COG4783   128 ALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 91-308 2.47e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.43  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  91 DRAKEILASLVERVPRNGDIFFLIAR-TFIKSEGHEAAREaIQKAASLSPEDASDMYHTAAQDY----IDSAEYEIAley 165
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQlHFIKGEFAQAGKD-YQKSIDLDPDFIFSHIQLGVTQYkegsIASSMATFR--- 457

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 166 lfEARRYSDEDPELLNdiafcyerngkfaesldYY-EQFLDEDpfndnvwfnvgtiharelRFDKSIEAFDYAIALNP-- 242
Cdd:TIGR00990 458 --RCKKNFPEAPDVYN-----------------YYgELLLDQN------------------KFDEAIEKFDTAIELEKet 500

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1309054213 243 ----ANSSVLYNKAIVYVNT-ENYKRGIETFEEFLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALAL 308
Cdd:TIGR00990 501 kpmyMNVLPLINKALALFQWkQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 68-176 7.63e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 7.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  68 EQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDAsDMYH 147
Cdd:COG4783    32 ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP-EAYL 110

                          90       100
                  ....*....|....*....|....*....
gi 1309054213 148 TAAQDYIDSAEYEIALEYLFEARRYSDED 176
Cdd:COG4783   111 RLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 67-142 8.97e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 8.97e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1309054213  67 YEQHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIARTFIKSEGHEAAREAIQKAASLSPEDA 142
Cdd:COG4235    44 LRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 92-303 1.65e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.74  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  92 RAKEILASLVERVPRNGDI--FFLIARTFIKSEGHEAAREAIQKAASlspeDASDMYHTAAQDYIDSAeYEIALEYLFEA 169
Cdd:TIGR00990 246 KAKEILETKPENLPSVTFVgnYLQSFRPKPRPAGLEDSNELDEETGN----GQLQLGLKSPESKADES-YEEAARAFEKA 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 170 RRYSDEDPELlndiAFCYERNGKFA-------ESLDYYEQFLDEDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNP 242
Cdd:TIGR00990 321 LDLGKLGEKE----AIALNLRGTFKclkgkhlEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1309054213 243 ANSSVLYNKAIVYVNTENYKRGIETFEEFLKHEPGNLFAIL----------GIADAFL----AMDNFKEAQRYYN 303
Cdd:TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIqlgvtqykegSIASSMAtfrrCKKNFPEAPDVYN 471
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 148-210 1.76e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 1.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1309054213 148 TAAQDYIDSAEYEIALEYLFEARRYSDEDP---ELLNDIAFCYERNGKFAESLDYYEQFLDEDPFN 210
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 187-245 1.83e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 1.83e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1309054213 187 YERNGKFAESLDYYEQFLD---EDPFNDNVWFNVGTIHARELRFDKSIEAFDYAIALNPANS 245
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_15 pfam13429
Tetratricopeptide repeat;
38-214 1.97e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 39.65  E-value: 1.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213  38 FTEEEFDFLINHYlnegDDWMVSEVARMGYE--QHPYSVDLGTKYADVLIVNREIDRAKEILASLVERVPRNGDIFFLIA 115
Cdd:pfam13429  75 ARADDYERLILLL----YDARPKDAARLSELgwRRFRSPRHLYSALYLYERAGDYDRLARLLASLEELPAAEQSPAFWLA 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054213 116 RT-FIKSEG-HEAAREAIQKAASLSPEDaSDMYHTAAQDYIDSAEYEIALEYLFEARRYSDEDPELLNDIAFCYERNGKF 193
Cdd:pfam13429 151 RAeYYRQTGePDAALRDYRRALALAPAS-TELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRP 229

                         170       180
                  ....*....|....*....|.
gi 1309054213 194 AESLDYYEQFLDEDPfNDNVW 214
Cdd:pfam13429 230 RKALPYLRKQAASNR-NDPLW 249
TPR_12 pfam13424
Tetratricopeptide repeat;
246-310 7.40e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 7.40e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1309054213 246 SVLYNKAIVYVNTENYKRGIETFEE--------FLKHEPGNLFAILGIADAFLAMDNFKEAQRYYNDALALDK 310
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKaleiarrlLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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