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Conserved domains on  [gi|1309054206|gb|PKP42200|]
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CDP-diacylglycerol--serine O-phosphatidyltransferase [Bacteroidetes bacterium HGW-Bacteroidetes-10]

Protein Classification

CDP-alcohol phosphatidyltransferase family protein( domain architecture ID 11439579)

CDP-alcohol phosphatidyltransferase family protein similar to phosphatidylcholine/phosphatidylserine synthase, which catalyzes the condensation of CDP-diacylglycerol with choline or L-serine to form phosphatidylcholine or (3-sn-phosphatidyl)-L-serine, respectively

Gene Ontology:  GO:0016780|GO:0008654

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
2-205 5.84e-54

Phosphatidylserine synthase [Lipid transport and metabolism];


:

Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 173.85  E-value: 5.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   2 SIRKSIPNSITSLNLVCGTVAVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAAL 81
Cdd:COG1183     7 RAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPALL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  82 IYMryselvsSTLSGKIPVLLIeavslIPIVLAVGSALRLAKFNVDTRQ-SESFIGVPTPANAILIISFLHytVFNPHFF 160
Cdd:COG1183    87 LYQ-------WGLLPLGGLGWL-----AAFLFAACSALRLARFNVKTDDdKNYFVGLPSPAAALLVASLVL--LGLELGL 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1309054206 161 PLEYTLWFWPAISIFLSYLLVSNIPMFSLKMKSLAWKENKTRFIF 205
Cdd:COG1183   153 PGLPNPWVLLALTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLL 197
 
Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
2-205 5.84e-54

Phosphatidylserine synthase [Lipid transport and metabolism];


Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 173.85  E-value: 5.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   2 SIRKSIPNSITSLNLVCGTVAVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAAL 81
Cdd:COG1183     7 RAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPALL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  82 IYMryselvsSTLSGKIPVLLIeavslIPIVLAVGSALRLAKFNVDTRQ-SESFIGVPTPANAILIISFLHytVFNPHFF 160
Cdd:COG1183    87 LYQ-------WGLLPLGGLGWL-----AAFLFAACSALRLARFNVKTDDdKNYFVGLPSPAAALLVASLVL--LGLELGL 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1309054206 161 PLEYTLWFWPAISIFLSYLLVSNIPMFSLKMKSLAWKENKTRFIF 205
Cdd:COG1183   153 PGLPNPWVLLALTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLL 197
pssA TIGR00473
CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine ...
12-185 2.14e-26

CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273098  Cd Length: 151  Bit Score: 100.21  E-value: 2.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  12 TSLNLVCGTVAVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAALIYmryselvs 91
Cdd:TIGR00473   1 TMLNAFSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVAPAALAY-------- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  92 stlsgKIPVLLIEAVSLIPIVLAVGsALRLAKFNVDTRQSESFIGVPTPANAILIISFLhytvfnphffpLEYTLWFWPA 171
Cdd:TIGR00473  73 -----SIGNFQTIGILVAALFFLCG-ILRLARFNVLNVKLPSFIGLPIPFAALLVVSLV-----------LLYSYLLAAI 135
                         170
                  ....*....|....
gi 1309054206 172 ISIFLSYLLVSNIP 185
Cdd:TIGR00473 136 AACLLSVLMVSNIR 149
CDP-OH_P_transf pfam01066
CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the ...
7-90 9.30e-14

CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.


Pssm-ID: 460049 [Multi-domain]  Cd Length: 157  Bit Score: 66.81  E-value: 9.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   7 IPNSITSLNLVCGTV-AVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVsfGLAPAALIYMR 85
Cdd:pfam01066   3 LPNLLTLLRILLVPVfVVLLLGPGNRILAAVVFALAALTDFLDGKIARKLNQVTDFGKFLDPLADKL--LVAAALIALSI 80

                  ....*
gi 1309054206  86 YSELV 90
Cdd:pfam01066  81 LGLLP 85
anchor_synt_A NF038086
protein sorting system archaetidylserine synthase; Members of this family are homologs of ...
4-185 2.83e-13

protein sorting system archaetidylserine synthase; Members of this family are homologs of CDP-diacylglycerol--serine O-phosphatidyltransferase PssA of subclass II, as found in Gram-positive bacteria, but occur in a branch of the archaea. In Haloferax volcanii, the member of this family HVO_1143, together with the PssD-related decarboxylase HVO_0146, were both shown to be required for the archaeosortase ArtA to cause removal of the PGF-CTERM sorting signal and replacement with a prenyl-derived C-terminal lipid anchor. Based on these observations, members of this family are suggested to be CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase, generating archaetidylserine en route to archaetidylethanolamine biosynthesis.


Pssm-ID: 468342 [Multi-domain]  Cd Length: 222  Bit Score: 66.98  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   4 RKSIPNSITSLNLVCGTVAVIMAFRGYELwAIYLILAAAVFDFFDGFAARLLKAySPMGKELDSLADLVSFGLAPAALIY 83
Cdd:NF038086    6 RLGVADAVTVANAALGFLAAVAAFVDPAL-AARLILLAAIADGLDGVVARRYGG-TPAGPYLDSLADVASFGVAPALLVV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  84 MryseLVSSTLSGKIPVLLIEAVSLIPIVLAVGSALRLAKFNVDTRQSESFIGVPTPANAILIISFLHYTVFNPhffple 163
Cdd:NF038086   84 A----VVRDAWGAAADPPVAVGAVVVAALFVAAAVVRLGLYTAYDTAHEETEGVQTTLAATILAAAVLAGVTDP------ 153
                         170       180
                  ....*....|....*....|..
gi 1309054206 164 ytlWFWPAISIFLSYLLVSNIP 185
Cdd:NF038086  154 ---AVLVAATVVLAYLMVSPIT 172
 
Name Accession Description Interval E-value
PssA COG1183
Phosphatidylserine synthase [Lipid transport and metabolism];
2-205 5.84e-54

Phosphatidylserine synthase [Lipid transport and metabolism];


Pssm-ID: 440796 [Multi-domain]  Cd Length: 237  Bit Score: 173.85  E-value: 5.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   2 SIRKSIPNSITSLNLVCGTVAVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAAL 81
Cdd:COG1183     7 RAIYLLPNLFTLLNLFCGFLAIVAAIEGDFELAALLILLAAVFDGLDGRVARLLNVQSEFGAELDSLADMVSFGVAPALL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  82 IYMryselvsSTLSGKIPVLLIeavslIPIVLAVGSALRLAKFNVDTRQ-SESFIGVPTPANAILIISFLHytVFNPHFF 160
Cdd:COG1183    87 LYQ-------WGLLPLGGLGWL-----AAFLFAACSALRLARFNVKTDDdKNYFVGLPSPAAALLVASLVL--LGLELGL 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1309054206 161 PLEYTLWFWPAISIFLSYLLVSNIPMFSLKMKSLAWKENKTRFIF 205
Cdd:COG1183   153 PGLPNPWVLLALTLLLALLMVSPIPYPSFKRLSLKRRVPLPLLLL 197
pssA TIGR00473
CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine ...
12-185 2.14e-26

CDP-diacylglycerol--serine O-phosphatidyltransferase; This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273098  Cd Length: 151  Bit Score: 100.21  E-value: 2.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  12 TSLNLVCGTVAVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAALIYmryselvs 91
Cdd:TIGR00473   1 TMLNAFSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVAPAALAY-------- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  92 stlsgKIPVLLIEAVSLIPIVLAVGsALRLAKFNVDTRQSESFIGVPTPANAILIISFLhytvfnphffpLEYTLWFWPA 171
Cdd:TIGR00473  73 -----SIGNFQTIGILVAALFFLCG-ILRLARFNVLNVKLPSFIGLPIPFAALLVVSLV-----------LLYSYLLAAI 135
                         170
                  ....*....|....
gi 1309054206 172 ISIFLSYLLVSNIP 185
Cdd:TIGR00473 136 AACLLSVLMVSNIR 149
CDP-OH_P_transf pfam01066
CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the ...
7-90 9.30e-14

CDP-alcohol phosphatidyltransferase; All of these members have the ability to catalyze the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.


Pssm-ID: 460049 [Multi-domain]  Cd Length: 157  Bit Score: 66.81  E-value: 9.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   7 IPNSITSLNLVCGTV-AVIMAFRGYELWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVsfGLAPAALIYMR 85
Cdd:pfam01066   3 LPNLLTLLRILLVPVfVVLLLGPGNRILAAVVFALAALTDFLDGKIARKLNQVTDFGKFLDPLADKL--LVAAALIALSI 80

                  ....*
gi 1309054206  86 YSELV 90
Cdd:pfam01066  81 LGLLP 85
anchor_synt_A NF038086
protein sorting system archaetidylserine synthase; Members of this family are homologs of ...
4-185 2.83e-13

protein sorting system archaetidylserine synthase; Members of this family are homologs of CDP-diacylglycerol--serine O-phosphatidyltransferase PssA of subclass II, as found in Gram-positive bacteria, but occur in a branch of the archaea. In Haloferax volcanii, the member of this family HVO_1143, together with the PssD-related decarboxylase HVO_0146, were both shown to be required for the archaeosortase ArtA to cause removal of the PGF-CTERM sorting signal and replacement with a prenyl-derived C-terminal lipid anchor. Based on these observations, members of this family are suggested to be CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase, generating archaetidylserine en route to archaetidylethanolamine biosynthesis.


Pssm-ID: 468342 [Multi-domain]  Cd Length: 222  Bit Score: 66.98  E-value: 2.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206   4 RKSIPNSITSLNLVCGTVAVIMAFRGYELwAIYLILAAAVFDFFDGFAARLLKAySPMGKELDSLADLVSFGLAPAALIY 83
Cdd:NF038086    6 RLGVADAVTVANAALGFLAAVAAFVDPAL-AARLILLAAIADGLDGVVARRYGG-TPAGPYLDSLADVASFGVAPALLVV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1309054206  84 MryseLVSSTLSGKIPVLLIEAVSLIPIVLAVGSALRLAKFNVDTRQSESFIGVPTPANAILIISFLHYTVFNPhffple 163
Cdd:NF038086   84 A----VVRDAWGAAADPPVAVGAVVVAALFVAAAVVRLGLYTAYDTAHEETEGVQTTLAATILAAAVLAGVTDP------ 153
                         170       180
                  ....*....|....*....|..
gi 1309054206 164 ytlWFWPAISIFLSYLLVSNIP 185
Cdd:NF038086  154 ---AVLVAATVVLAYLMVSPIT 172
PgsA COG0558
Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; ...
7-84 2.19e-09

Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; Phosphatidylglycerophosphate synthase is part of the Pathway/BioSystem: Phospholipid biosynthesis


Pssm-ID: 440324 [Multi-domain]  Cd Length: 177  Bit Score: 55.25  E-value: 2.19e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1309054206   7 IPNSITSLNLVCGTVAVIMAFRGYE-LWAIYLILAAAVFDFFDGFAARLLKAYSPMGKELDSLADLVSFGLAPAALIYM 84
Cdd:COG0558    11 IPNQLTLLRILLVPVFALLLLLGGAlLLALVLFLLAGLTDALDGYLARRLGQVSRFGAFLDPVADKLLDAAALLGLVLL 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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