NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1285344097|gb|PJP11057|]
View 

putative tyrosine protein phosphatase MIH1 [Saccharomyces cerevisiae]

Protein Classification

MIH1 family protein( domain architecture ID 11473809)

MIH1 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MIH1 COG5105
Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];
1-442 0e+00

Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];


:

Pssm-ID: 227436 [Multi-domain]  Cd Length: 427  Bit Score: 620.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097   1 MNNIFHGTEDECANEDVLSFQKISLKSPFGKKKNIFRNVQTFFKSKSKHSNVDDDLINKENLAFDKSPLLTNHRSKEIDG 80
Cdd:COG5105     1 MKNIFHGLEDECANEDVFFFQKASKKSIFGDKKNIFRNIATFFKPKAKHALADDDLINKENFAFDKRPLLSNHRSKEIAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097  81 PSPNIKQLGHRDELDENENENDDIVLSMHFASQTLQSPTRNSSRRSLTNNRDNDLLSRIKYPGSPQRSSSFSRSRSLSRK 160
Cdd:COG5105    81 PFLNIKQLGHRDELDEKENEGDDATLHLHFALQRMTSSSANASSDNEQCPADVDQMYIKKFYEIPWSSSENIEFEDPGHD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 161 PSMNSSSNSSRRVQRQDGKIPRSSRKSSQKFSNITQNTLNFTSASSSPLAPNSVGVKCFESCLAKTQIPYYYDDRNSNDF 240
Cdd:COG5105   161 PFVDNSDNSKMNHLRGSGKQPKCREKIAFAVWTSLQGMRGFSRAGPAPAAENSHLIDFFKSFSNGEVFPLPTLGPGKSDS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNMCESFYNsCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVlhsdtsnnNTLPTLLIIHC 320
Cdd:COG5105   241 IQRISVETLKQVLEGMYNIDFLK-CIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHKP--------LTHPRALIFHC 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 321 EFSSHRGPSLASHLRNCDRIINQDHYPKLFYPDILILDGGYKAVFDNFPELCYPRQYVGMNSQENLLNCEQEMDKFRRES 400
Cdd:COG5105   312 EFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDKFRRNK 391
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1285344097 401 KRFATKNNSFRKLASPSnpnffyRDSHQSSTTMASSALSFRF 442
Cdd:COG5105   392 KFFATKNNSFGKLALAS------PDSHDSPTAMASLALLFRF 427
 
Name Accession Description Interval E-value
MIH1 COG5105
Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];
1-442 0e+00

Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];


Pssm-ID: 227436 [Multi-domain]  Cd Length: 427  Bit Score: 620.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097   1 MNNIFHGTEDECANEDVLSFQKISLKSPFGKKKNIFRNVQTFFKSKSKHSNVDDDLINKENLAFDKSPLLTNHRSKEIDG 80
Cdd:COG5105     1 MKNIFHGLEDECANEDVFFFQKASKKSIFGDKKNIFRNIATFFKPKAKHALADDDLINKENFAFDKRPLLSNHRSKEIAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097  81 PSPNIKQLGHRDELDENENENDDIVLSMHFASQTLQSPTRNSSRRSLTNNRDNDLLSRIKYPGSPQRSSSFSRSRSLSRK 160
Cdd:COG5105    81 PFLNIKQLGHRDELDEKENEGDDATLHLHFALQRMTSSSANASSDNEQCPADVDQMYIKKFYEIPWSSSENIEFEDPGHD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 161 PSMNSSSNSSRRVQRQDGKIPRSSRKSSQKFSNITQNTLNFTSASSSPLAPNSVGVKCFESCLAKTQIPYYYDDRNSNDF 240
Cdd:COG5105   161 PFVDNSDNSKMNHLRGSGKQPKCREKIAFAVWTSLQGMRGFSRAGPAPAAENSHLIDFFKSFSNGEVFPLPTLGPGKSDS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNMCESFYNsCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVlhsdtsnnNTLPTLLIIHC 320
Cdd:COG5105   241 IQRISVETLKQVLEGMYNIDFLK-CIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHKP--------LTHPRALIFHC 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 321 EFSSHRGPSLASHLRNCDRIINQDHYPKLFYPDILILDGGYKAVFDNFPELCYPRQYVGMNSQENLLNCEQEMDKFRRES 400
Cdd:COG5105   312 EFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDKFRRNK 391
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1285344097 401 KRFATKNNSFRKLASPSnpnffyRDSHQSSTTMASSALSFRF 442
Cdd:COG5105   392 KFFATKNNSFGKLALAS------PDSHDSPTAMASLALLFRF 427
Cdc25 cd01530
Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the ...
241-366 6.13e-59

Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).


Pssm-ID: 238788 [Multi-domain]  Cd Length: 121  Bit Score: 191.66  E-value: 6.13e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNMCeSFYNSCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVLHsdtsNNNTLPTLLIIHC 320
Cdd:cd01530     1 LKRISPETLARLLQGKYD-NFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGV----ASKKKRRVLIFHC 75
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1285344097 321 EFSSHRGPSLASHLRNCDRIINQDHYPKLFYPDILILDGGYKAVFD 366
Cdd:cd01530    76 EFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFFE 121
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
263-370 1.20e-15

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 72.49  E-value: 1.20e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097  263 NSCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVLHS---DTSNNNTLPTLLIIHCeFSSHRGPSLASHLRNCDr 339
Cdd:smart00450   3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFeelLKRLGLDKDKPVVVYC-RSGNRSAKAAWLLRELG- 80
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1285344097  340 iinqdhypklfYPDILILDGGYKAVFDNFPE 370
Cdd:smart00450  81 -----------FKNVYLLDGGYKEWSAAGPP 100
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
266-363 8.22e-10

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 55.95  E-value: 8.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 266 RIIDCRFEYEYTGGHIINSVNI-HSRDELEYEFIHKVLHSDTSNNNTLPtlLIIHCEfSSHRGPSLASHLRncdriinqd 344
Cdd:pfam00581   7 VLIDVRPPEEYAKGHIPGAVNVpLSSLSLPPLPLLELLEKLLELLKDKP--IVVYCN-SGNRAAAAAALLK--------- 74
                          90
                  ....*....|....*....
gi 1285344097 345 hypKLFYPDILILDGGYKA 363
Cdd:pfam00581  75 ---ALGYKNVYVLDGGFEA 90
 
Name Accession Description Interval E-value
MIH1 COG5105
Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];
1-442 0e+00

Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning];


Pssm-ID: 227436 [Multi-domain]  Cd Length: 427  Bit Score: 620.90  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097   1 MNNIFHGTEDECANEDVLSFQKISLKSPFGKKKNIFRNVQTFFKSKSKHSNVDDDLINKENLAFDKSPLLTNHRSKEIDG 80
Cdd:COG5105     1 MKNIFHGLEDECANEDVFFFQKASKKSIFGDKKNIFRNIATFFKPKAKHALADDDLINKENFAFDKRPLLSNHRSKEIAG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097  81 PSPNIKQLGHRDELDENENENDDIVLSMHFASQTLQSPTRNSSRRSLTNNRDNDLLSRIKYPGSPQRSSSFSRSRSLSRK 160
Cdd:COG5105    81 PFLNIKQLGHRDELDEKENEGDDATLHLHFALQRMTSSSANASSDNEQCPADVDQMYIKKFYEIPWSSSENIEFEDPGHD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 161 PSMNSSSNSSRRVQRQDGKIPRSSRKSSQKFSNITQNTLNFTSASSSPLAPNSVGVKCFESCLAKTQIPYYYDDRNSNDF 240
Cdd:COG5105   161 PFVDNSDNSKMNHLRGSGKQPKCREKIAFAVWTSLQGMRGFSRAGPAPAAENSHLIDFFKSFSNGEVFPLPTLGPGKSDS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNMCESFYNsCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVlhsdtsnnNTLPTLLIIHC 320
Cdd:COG5105   241 IQRISVETLKQVLEGMYNIDFLK-CIIIDCRFEYEYRGGHIINAVNISSTKKLGLLFRHKP--------LTHPRALIFHC 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 321 EFSSHRGPSLASHLRNCDRIINQDHYPKLFYPDILILDGGYKAVFDNFPELCYPRQYVGMNSQENLLNCEQEMDKFRRES 400
Cdd:COG5105   312 EFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDPKGYVTMNNAELDYRCLYKMDKFRRNK 391
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1285344097 401 KRFATKNNSFRKLASPSnpnffyRDSHQSSTTMASSALSFRF 442
Cdd:COG5105   392 KFFATKNNSFGKLALAS------PDSHDSPTAMASLALLFRF 427
Cdc25 cd01530
Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the ...
241-366 6.13e-59

Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).


Pssm-ID: 238788 [Multi-domain]  Cd Length: 121  Bit Score: 191.66  E-value: 6.13e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNMCeSFYNSCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVLHsdtsNNNTLPTLLIIHC 320
Cdd:cd01530     1 LKRISPETLARLLQGKYD-NFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGV----ASKKKRRVLIFHC 75
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1285344097 321 EFSSHRGPSLASHLRNCDRIINQDHYPKLFYPDILILDGGYKAVFD 366
Cdd:cd01530    76 EFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFFE 121
RHOD smart00450
Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The ...
263-370 1.20e-15

Rhodanese Homology Domain; An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.


Pssm-ID: 197731 [Multi-domain]  Cd Length: 100  Bit Score: 72.49  E-value: 1.20e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097  263 NSCRIIDCRFEYEYTGGHIINSVNIHSRDELEYEFIHKVLHS---DTSNNNTLPTLLIIHCeFSSHRGPSLASHLRNCDr 339
Cdd:smart00450   3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFeelLKRLGLDKDKPVVVYC-RSGNRSAKAAWLLRELG- 80
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1285344097  340 iinqdhypklfYPDILILDGGYKAVFDNFPE 370
Cdd:smart00450  81 -----------FKNVYLLDGGYKEWSAAGPP 100
Cdc25_Acr2p cd01443
Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included ...
241-365 1.87e-12

Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).


Pssm-ID: 238720 [Multi-domain]  Cd Length: 113  Bit Score: 63.96  E-value: 1.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNnmceSFYNSCR---IIDCRFEyEYTGGHIINSVNIHSRDEleYEFIHKVLHSDTSNNNTLptlLI 317
Cdd:cd01443     1 LKYISPEELVALLEN----SDSNAGKdfvVVDLRRD-DYEGGHIKGSINLPAQSC--YQTLPQVYALFSLAGVKL---AI 70
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1285344097 318 IHCEFSSHRGPSLASHLRNCDRiinQDHYPklfYPDILILDGGYKAVF 365
Cdd:cd01443    71 FYCGSSQGRGPRAARWFADYLR---KVGES---LPKSYILTGGIKAWY 112
Rhodanese pfam00581
Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single ...
266-363 8.22e-10

Rhodanese-like domain; Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.


Pssm-ID: 425764 [Multi-domain]  Cd Length: 92  Bit Score: 55.95  E-value: 8.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 266 RIIDCRFEYEYTGGHIINSVNI-HSRDELEYEFIHKVLHSDTSNNNTLPtlLIIHCEfSSHRGPSLASHLRncdriinqd 344
Cdd:pfam00581   7 VLIDVRPPEEYAKGHIPGAVNVpLSSLSLPPLPLLELLEKLLELLKDKP--IVVYCN-SGNRAAAAAALLK--------- 74
                          90
                  ....*....|....*....
gi 1285344097 345 hypKLFYPDILILDGGYKA 363
Cdd:pfam00581  75 ---ALGYKNVYVLDGGFEA 90
RHOD cd00158
Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese ...
267-363 7.12e-08

Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.


Pssm-ID: 238089 [Multi-domain]  Cd Length: 89  Bit Score: 49.99  E-value: 7.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 267 IIDCRFEYEYTGGHIINSVNIHSrDELEYEFIHKVLHSDtsnnntlpTLLIIHCEfSSHRGPSLASHLRncdriinqdhy 346
Cdd:cd00158    13 LLDVREPEEYAAGHIPGAINIPL-SELEERAALLELDKD--------KPIVVYCR-SGNRSARAAKLLR----------- 71
                          90
                  ....*....|....*..
gi 1285344097 347 pKLFYPDILILDGGYKA 363
Cdd:cd00158    72 -KAGGTNVYNLEGGMLA 87
Acr2p cd01531
Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain ...
244-363 1.04e-07

Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.


Pssm-ID: 238789 [Multi-domain]  Cd Length: 113  Bit Score: 50.49  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 244 ISPETLKNILQNNmcesfYNSCRIIDCRfEYEYTGGHIINSVNIHSRdeleyEFIHKVLHSDTSNNNTLPTLLIIHCEFS 323
Cdd:cd01531     4 ISPAQLKGWIRNG-----RPPFQVVDVR-DEDYAGGHIKGSWHYPST-----RFKAQLNQLVQLLSGSKKDTVVFHCALS 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1285344097 324 SHRGPSLASHLRNC--DRIINQDHypklfyPDILILDGGYKA 363
Cdd:cd01531    73 QVRGPSAARKFLRYldEEDLETSK------FEVYVLHGGFNA 108
PspE COG0607
Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; ...
241-363 1.03e-06

Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Rhodanese-related sulfurtransferase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440372 [Multi-domain]  Cd Length: 106  Bit Score: 47.27  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1285344097 241 FPRISPETLKNILQNNmcesfynSCRIIDCRFEYEYTGGHIINSVNIhSRDELEYEFihkvlhsdtsnnNTLP--TLLII 318
Cdd:COG0607     3 VKEISPAELAELLESE-------DAVLLDVREPEEFAAGHIPGAINI-PLGELAERL------------DELPkdKPIVV 62
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1285344097 319 HCEfSSHRGPSLASHLRncdriinqdhypKLFYPDILILDGGYKA 363
Cdd:COG0607    63 YCA-SGGRSAQAAALLR------------RAGYTNVYNLAGGIEA 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH