|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
1-233 |
3.58e-163 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 450.27 E-value: 3.58e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 1 MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYS 80
Cdd:PRK15069 1 MIEILQEYWKALLWTDGYRFTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 81 GMYTLEIVKGTDLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIAL 160
Cdd:PRK15069 81 GMYSLEIVRGTDLLDAFFRSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1267879570 161 PAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQHVS 233
Cdd:PRK15069 161 PAYSNEVILMLHATTLAFTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERRWLAHLK 233
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
2-231 |
1.27e-107 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 309.33 E-value: 1.27e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 2 IEIIQEYWKSLLwtdgyrfTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSG 81
Cdd:COG4160 3 LDLLFEYLPLLL-------SGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 82 MYTLEIVKGTdLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALP 161
Cdd:COG4160 76 LGQFEWVRES-WLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALP 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 162 AYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQH 231
Cdd:COG4160 155 AYSNEVILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRH 224
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
20-227 |
9.17e-24 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 94.53 E-value: 9.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVkgtdlLNAFFR 99
Cdd:TIGR03003 14 IEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIR-----LPALVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 100 SglnctVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFT 179
Cdd:TIGR03003 89 G-----VLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1267879570 180 ATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:TIGR03003 164 ITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
25-218 |
1.03e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.70 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 25 ITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMytleivkGTDLLNAFFRSGLNC 104
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF-------GVLLGWGILPGLGLP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 105 TVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPD 184
Cdd:cd06261 76 ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155
|
170 180 190
....*....|....*....|....*....|....
gi 1267879570 185 LLKIARDINSATYQPFTAFGIAAVLYLLISYVLI 218
Cdd:cd06261 156 APGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
37-227 |
8.23e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 50.76 E-value: 8.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 37 GGLLAVILAVGRvssNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgmytleivkgTDLLNAFFRSGLNCTVLALTLNTCAY 116
Cdd:pfam00528 1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLV-----------VIAILSILGHGILPAIILALLGWAGY 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 117 TTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVI-LMLHSTALAFTATVPDL--LKIARDIN 193
Cdd:pfam00528 67 ARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGgALGGAVLLEFLGSWPGLglLLIEAILG 146
|
170 180 190
....*....|....*....|....*....|....
gi 1267879570 194 SATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:pfam00528 147 YDYPEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
1-233 |
3.58e-163 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 450.27 E-value: 3.58e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 1 MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYS 80
Cdd:PRK15069 1 MIEILQEYWKALLWTDGYRFTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 81 GMYTLEIVKGTDLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIAL 160
Cdd:PRK15069 81 GMYSLEIVRGTDLLDAFFRSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRAL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1267879570 161 PAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQHVS 233
Cdd:PRK15069 161 PAYSNEVILMLHATTLAFTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERRWLAHLK 233
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
2-231 |
1.27e-107 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 309.33 E-value: 1.27e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 2 IEIIQEYWKSLLwtdgyrfTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSG 81
Cdd:COG4160 3 LDLLFEYLPLLL-------SGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 82 MYTLEIVKGTdLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALP 161
Cdd:COG4160 76 LGQFEWVRES-WLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALP 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 162 AYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQH 231
Cdd:COG4160 155 AYSNEVILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRH 224
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
2-228 |
5.26e-63 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 195.68 E-value: 5.26e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 2 IEIIQEYWKSLLwtdgyrfTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSG 81
Cdd:COG0765 5 FSVLLDYLPLLL-------EGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 82 MYTLEIVkgtdlLNAFFRSglnctVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALP 161
Cdd:COG0765 78 LPLLGID-----LSPFVAA-----VIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1267879570 162 AYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRW 228
Cdd:COG0765 148 PLGNEFISLLKDTSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRL 214
|
|
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
22-229 |
5.27e-41 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 139.71 E-value: 5.27e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 22 GVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTDLLNAFFRSG 101
Cdd:PRK11122 11 GLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEYPWLWHLLSQP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 102 LNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRcIILPSALRIALPAYSNEVILMLHSTALAFTAT 181
Cdd:PRK11122 91 WLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTIT 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1267879570 182 VPDLLKIARDINSATYQpFTAFGIAAVLYLLISYVLISLFRRAERRWL 229
Cdd:PRK11122 170 LMDVMGYSQLLYGRTYD-VMVFGAAGIIYLVVNGLLTLLMRLIERKAL 216
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
25-227 |
3.39e-31 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 114.77 E-value: 3.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 25 ITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTP-----LYV-----QLLVFYSGMYTLEIVKGTDLL 94
Cdd:PRK11123 13 MTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPeilvvLFIyfgssQLLLTLSDGFTLNLGFVQIPV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 95 ----NAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILM 170
Cdd:PRK11123 93 qmdiENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWLVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1267879570 171 LHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:PRK11123 173 LKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELR 229
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
22-231 |
3.70e-31 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 114.08 E-value: 3.70e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 22 GVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLeivkGTDLlnaffrSG 101
Cdd:PRK15100 18 GAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQF----GIEL------DP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 102 LNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTAT 181
Cdd:PRK15100 88 IPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQ 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1267879570 182 VPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQH 231
Cdd:PRK15100 168 VPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQ 217
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
20-232 |
6.10e-25 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 97.94 E-value: 6.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTP-LYVQLLVFYSGMYTLEIVKGTDLLNAFF 98
Cdd:PRK15135 10 LQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPdLVLMLLIFYGLQIALNSVTEALGVGQID 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 99 RSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAF 178
Cdd:PRK15135 90 IDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1267879570 179 TATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERRWLQHV 232
Cdd:PRK15135 170 LLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERRYSVGV 223
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
20-227 |
9.17e-24 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 94.53 E-value: 9.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVkgtdlLNAFFR 99
Cdd:TIGR03003 14 IEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIR-----LPALVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 100 SglnctVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFT 179
Cdd:TIGR03003 89 G-----VLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1267879570 180 ATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:TIGR03003 164 ITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
20-227 |
2.86e-19 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 82.80 E-value: 2.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgmYTLEIvkgtdLLNAFFR 99
Cdd:PRK09494 16 LEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIY---FALPM-----AFNDLRI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 100 SGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFT 179
Cdd:PRK09494 88 DPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIV 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1267879570 180 ATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:PRK09494 168 IGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
25-218 |
1.03e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.70 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 25 ITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMytleivkGTDLLNAFFRSGLNC 104
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF-------GVLLGWGILPGLGLP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 105 TVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPD 184
Cdd:cd06261 76 ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE 155
|
170 180 190
....*....|....*....|....*....|....
gi 1267879570 185 LLKIARDINSATYQPFTAFGIAAVLYLLISYVLI 218
Cdd:cd06261 156 APGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
9-214 |
5.58e-13 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 65.62 E-value: 5.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 9 WKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgMYTLEIV 88
Cdd:PRK15107 6 WSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFY--LIVPGFL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 89 KGTDLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVI 168
Cdd:PRK15107 84 QNVLGLSPKTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGI 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1267879570 169 LMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLIS 214
Cdd:PRK15107 164 VLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVIS 209
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
20-123 |
3.78e-12 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 60.62 E-value: 3.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLeivkGTDLlnaffr 99
Cdd:TIGR01726 6 LKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI----GIRL------ 75
|
90 100
....*....|....*....|....
gi 1267879570 100 SGLNCTVLALTLNTCAYTTEIFAG 123
Cdd:TIGR01726 76 SPLTAAVIALTLFYGAYLAEIFRG 99
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
37-227 |
8.23e-08 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 50.76 E-value: 8.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 37 GGLLAVILAVGRvssNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgmytleivkgTDLLNAFFRSGLNCTVLALTLNTCAY 116
Cdd:pfam00528 1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLV-----------VIAILSILGHGILPAIILALLGWAGY 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 117 TTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVI-LMLHSTALAFTATVPDL--LKIARDIN 193
Cdd:pfam00528 67 ARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGgALGGAVLLEFLGSWPGLglLLIEAILG 146
|
170 180 190
....*....|....*....|....*....|....
gi 1267879570 194 SATYQPFTAFGIAAVLYLLISYVLISLFRRAERR 227
Cdd:pfam00528 147 YDYPEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
13-156 |
4.27e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 40.52 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 13 LWTDGYRFTGVAITLWLLISSVVMGGLLAVILAVGrVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgmytleIVKGTD 92
Cdd:COG0600 53 LLASGELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLALAPLLI-------LWFGIG 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1267879570 93 LLNAFFRSGLnCTVLALTLNTcaytteifAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSAL 156
Cdd:COG0600 125 EASKIFVIFL-GAFFPILLNT--------AAGVRSVDPELLELARSLGASRWQILRKVVLPAAL 179
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
20-156 |
3.23e-03 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 37.91 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 20 FTGVAITLWLLISSVVMGGLLAVILAV---GRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYsgmytleivkgtdllnA 96
Cdd:TIGR01097 57 LKALLETLAMAILGTVLAAVLAVPLALlaaRNITPSPWLYGLARLLLNFLRAIPELVWALIFV----------------A 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 97 FFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSAL 156
Cdd:TIGR01097 121 AVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVL 180
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
1-156 |
9.92e-03 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 36.21 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 1 MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAV---ILAVGRVSSNKFIRFPIWLFTYIFRGTP--LYVQL 75
Cdd:COG3639 31 LADFLSRFFPPDWSYLPDLLSALLETLAIALLGTLLGAVLALplaFLAARNLAPNPWVRLLARRLLNVLRAIPelVWALI 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267879570 76 LVFYSGmytleivkgtdlLNAFfrSGlnctVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSA 155
Cdd:COG3639 111 FVAAVG------------LGPF--AG----VLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQV 172
|
.
gi 1267879570 156 L 156
Cdd:COG3639 173 L 173
|
|
| |
