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Conserved domains on  [gi|1256329101|gb|PEA70332.1|]
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aminoglycoside phosphotransferase [Bacillus toyonensis]

Protein Classification

aminoglycoside phosphotransferase family protein( domain architecture ID 1000867)

aminoglycoside phosphotransferase family protein catalyzes the phosphorylation of small molecule substrates such as aminoglycoside antibiotics and N-acetylhexosamine; similar to Streptomyces rubrogriseu 3-hydroxyasparagine phosphotransferase

EC:  2.7.1.-
Gene Ontology:  GO:0005524|GO:0016310

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
APH super family cl37506
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
24-226 1.20e-05

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


The actual alignment was detected with superfamily member pfam01636:

Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 45.57  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  24 KGLNGGTTSTIYLL---DEQYVVKLNESDV----IREEAYFLQFYKKNDAF--PKLLYKDPLS-----RYIVYSFLEGTT 89
Cdd:pfam01636   3 RPISSGASNRTYLVttgDGRYVLRLPPPGRaaeeLRRELALLRHLAAAGVPpvPRVLAGCTDAellglPFLLMEYLPGEV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  90 SCK--SDHKRSILCKLVKDVINKYEKVPKvsgwgwkDSTVQSWNEFLTVTVMEAHENVKSYISDEECRLV------FKLA 161
Cdd:pfam01636  83 LARplLPEERGALLEALGRALARLHAVDP-------AALPLAGRLARLLELLRQLEAALARLLAAELLDRleeleeRLLA 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1256329101 162 NSPNRGAGIDEPFLLHGDFGFHNFIVQEN-RLHGVIDP-LPVLGDPIYDLIYAFCSTPEDLTKEAID 226
Cdd:pfam01636 156 ALLALLPAELPPVLVHGDLHPGNLLVDPGgRVSGVIDFeDAGLGDPAYDLAILLNSWGRELGAELLA 222
 
Name Accession Description Interval E-value
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
24-226 1.20e-05

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 45.57  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  24 KGLNGGTTSTIYLL---DEQYVVKLNESDV----IREEAYFLQFYKKNDAF--PKLLYKDPLS-----RYIVYSFLEGTT 89
Cdd:pfam01636   3 RPISSGASNRTYLVttgDGRYVLRLPPPGRaaeeLRRELALLRHLAAAGVPpvPRVLAGCTDAellglPFLLMEYLPGEV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  90 SCK--SDHKRSILCKLVKDVINKYEKVPKvsgwgwkDSTVQSWNEFLTVTVMEAHENVKSYISDEECRLV------FKLA 161
Cdd:pfam01636  83 LARplLPEERGALLEALGRALARLHAVDP-------AALPLAGRLARLLELLRQLEAALARLLAAELLDRleeleeRLLA 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1256329101 162 NSPNRGAGIDEPFLLHGDFGFHNFIVQEN-RLHGVIDP-LPVLGDPIYDLIYAFCSTPEDLTKEAID 226
Cdd:pfam01636 156 ALLALLPAELPPVLVHGDLHPGNLLVDPGgRVSGVIDFeDAGLGDPAYDLAILLNSWGRELGAELLA 222
YcbJ COG3173
Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction ...
171-228 1.94e-05

Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction only];


Pssm-ID: 442406 [Multi-domain]  Cd Length: 284  Bit Score: 45.11  E-value: 1.94e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1256329101 171 DEPFLLHGDFGFHNFIVQEN--RLHGVID-PLPVLGDPIYDLIYA--FCSTPEDLTKEAIDYV 228
Cdd:COG3173   190 GPPVLVHGDLRPGNLLVDPDdgRLTAVIDwELATLGDPAADLAYLllYWRLPDDLLGPRAAFL 252
APH_ChoK_like_1 cd05155
Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and ...
172-212 1.09e-04

Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase; This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270704 [Multi-domain]  Cd Length: 234  Bit Score: 42.61  E-value: 1.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1256329101 172 EPFLLHGDFGFHNFIVQENRLHGVID--PLPVlGDPIYDLIYA 212
Cdd:cd05155   162 PPVWLHGDLHPGNLLVRDGRLSAVIDfgDLGV-GDPACDLAIA 203
 
Name Accession Description Interval E-value
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
24-226 1.20e-05

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 45.57  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  24 KGLNGGTTSTIYLL---DEQYVVKLNESDV----IREEAYFLQFYKKNDAF--PKLLYKDPLS-----RYIVYSFLEGTT 89
Cdd:pfam01636   3 RPISSGASNRTYLVttgDGRYVLRLPPPGRaaeeLRRELALLRHLAAAGVPpvPRVLAGCTDAellglPFLLMEYLPGEV 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1256329101  90 SCK--SDHKRSILCKLVKDVINKYEKVPKvsgwgwkDSTVQSWNEFLTVTVMEAHENVKSYISDEECRLV------FKLA 161
Cdd:pfam01636  83 LARplLPEERGALLEALGRALARLHAVDP-------AALPLAGRLARLLELLRQLEAALARLLAAELLDRleeleeRLLA 155
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1256329101 162 NSPNRGAGIDEPFLLHGDFGFHNFIVQEN-RLHGVIDP-LPVLGDPIYDLIYAFCSTPEDLTKEAID 226
Cdd:pfam01636 156 ALLALLPAELPPVLVHGDLHPGNLLVDPGgRVSGVIDFeDAGLGDPAYDLAILLNSWGRELGAELLA 222
YcbJ COG3173
Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction ...
171-228 1.94e-05

Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction only];


Pssm-ID: 442406 [Multi-domain]  Cd Length: 284  Bit Score: 45.11  E-value: 1.94e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1256329101 171 DEPFLLHGDFGFHNFIVQEN--RLHGVID-PLPVLGDPIYDLIYA--FCSTPEDLTKEAIDYV 228
Cdd:COG3173   190 GPPVLVHGDLRPGNLLVDPDdgRLTAVIDwELATLGDPAADLAYLllYWRLPDDLLGPRAAFL 252
APH_ChoK_like_1 cd05155
Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and ...
172-212 1.09e-04

Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase; This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270704 [Multi-domain]  Cd Length: 234  Bit Score: 42.61  E-value: 1.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1256329101 172 EPFLLHGDFGFHNFIVQENRLHGVID--PLPVlGDPIYDLIYA 212
Cdd:cd05155   162 PPVWLHGDLHPGNLLVRDGRLSAVIDfgDLGV-GDPACDLAIA 203
StrB COG3570
Streptomycin 6-kinase [Defense mechanisms];
167-214 2.84e-04

Streptomycin 6-kinase [Defense mechanisms];


Pssm-ID: 442791 [Multi-domain]  Cd Length: 301  Bit Score: 41.50  E-value: 2.84e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1256329101 167 GAGIDEPFLLHGDFgfHnfivQENRLHG------VIDPLPVLGDPIYDLIYAFC 214
Cdd:COG3570   183 LASPAEDVLLHGDL--H----HGNVLAAgrrgwlAIDPKGLIGDPAFDLANLLR 230
APH_ChoK_like cd05120
Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ...
169-218 6.50e-04

Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270690 [Multi-domain]  Cd Length: 158  Bit Score: 39.59  E-value: 6.50e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1256329101 169 GIDEPFLLHGDFGFHNFIVQ-ENRLHGVIDP-LPVLGDPIYDLIYAFCSTPE 218
Cdd:cd05120   107 RIDSSVLTHGDLHPGNILVKpDGKLSGIIDWeFAGYGPPAFDYAAALRDWTE 158
ACAD10_11_N-like cd05154
N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins; This ...
171-219 2.43e-03

N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins; This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270703 [Multi-domain]  Cd Length: 254  Bit Score: 38.75  E-value: 2.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1256329101 171 DEPFLLHGDFGFHNFIVQE-NRLHGVID-PLPVLGDPIYDL--IYAFCSTPED 219
Cdd:cd05154   175 GRPVLVHGDFRLGNLLFDPdGRVTAVLDwELATLGDPLEDLawLLARWWRPGD 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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