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Conserved domains on  [gi|75107031|sp|P81396|]
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RecName: Full=Myb-related protein 340

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 5-190 7.79e-44

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 146.38  E-value: 7.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031    5 PCNSHdVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHA 84
Cdd:PLN03212  16 PCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031   85 KWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQA---------EASFIGHINPEHSNEQASTSLLSSSCHADhaves 155
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGidpqthkplDANNIHKPEEEVSGGQKYPIEPISSSHTD----- 169

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 75107031  156 ySSSFNGNMGNNVQYPNHFPTES--NDYFWSMEDLWS 190
Cdd:PLN03212 170 -DTTVNGGDGDSKNSINVFGGEHgyEDFGFCYDDKFS 205
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-190 7.79e-44

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 146.38  E-value: 7.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031    5 PCNSHdVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHA 84
Cdd:PLN03212  16 PCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031   85 KWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQA---------EASFIGHINPEHSNEQASTSLLSSSCHADhaves 155
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGidpqthkplDANNIHKPEEEVSGGQKYPIEPISSSHTD----- 169

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 75107031  156 ySSSFNGNMGNNVQYPNHFPTES--NDYFWSMEDLWS 190
Cdd:PLN03212 170 -DTTVNGGDGDSKNSINVFGGEHgyEDFGFCYDDKFS 205
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 1.55e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 1.55e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 75107031    68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTR 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-112 5.26e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.43  E-value: 5.26e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031  11 VEVRKGPWTMEEDLILINFISNHGEGVWNTIArSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRW 90
Cdd:COG5147  16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVA-SLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|..
gi 75107031  91 SKIAKHLPGRTDNEIKNYWNRT 112
Cdd:COG5147  95 STIADYKDRRTAQQCVERYVNT 116
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 72-111 1.99e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 1.99e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 75107031  72 TPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNYWNR 111
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
68-111 2.59e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 2.59e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 75107031     68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNYWNR 111
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRN 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-190 7.79e-44

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 146.38  E-value: 7.79e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031    5 PCNSHdVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHA 84
Cdd:PLN03212  16 PCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031   85 KWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQA---------EASFIGHINPEHSNEQASTSLLSSSCHADhaves 155
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGidpqthkplDANNIHKPEEEVSGGQKYPIEPISSSHTD----- 169

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 75107031  156 ySSSFNGNMGNNVQYPNHFPTES--NDYFWSMEDLWS 190
Cdd:PLN03212 170 -DTTVNGGDGDSKNSINVFGGEHgyEDFGFCYDDKFS 205
PLN03091 PLN03091
hypothetical protein; Provisional
 12-120 1.52e-43

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 150.90  E-value: 1.52e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031   12 EVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWS 91
Cdd:PLN03091  11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS 90

                         90       100
                 ....*....|....*....|....*....
gi 75107031   92 KIAKHLPGRTDNEIKNYWNRTrIQKHIKQ 120
Cdd:PLN03091  91 QIAAQLPGRTDNEIKNLWNSC-LKKKLRQ 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 1.55e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 1.55e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 75107031    68 RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTR 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-112 5.26e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 69.43  E-value: 5.26e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75107031  11 VEVRKGPWTMEEDLILINFISNHGEGVWNTIArSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRW 90
Cdd:COG5147  16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVA-SLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|..
gi 75107031  91 SKIAKHLPGRTDNEIKNYWNRT 112
Cdd:COG5147  95 STIADYKDRRTAQQCVERYVNT 116
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 15-62 5.70e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.90  E-value: 5.70e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 75107031    15 KGPWTMEEDLILINFISNHGeGVWNTIARSAGlKRTGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 72-111 1.99e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.43  E-value: 1.99e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 75107031  72 TPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNYWNR 111
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
68-111 2.59e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 2.59e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 75107031     68 RGNITPEEQLLIMELHAKWG-NRWSKIAKHLPGRTDNEIKNYWNR 111
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRN 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 18-75 5.09e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 55.78  E-value: 5.09e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 75107031    18 WTMEEDLILINFISNHGEGvWNTIARSAGlKRTGKSCRLRWLNYLRPDVRRGNITPEE 75
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEE 56
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
15-64 1.24e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 54.54  E-value: 1.24e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 75107031     15 KGPWTMEEDLILINFISNHGEGVWNTIARSAGlKRTGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-62 5.41e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 52.58  E-value: 5.41e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 75107031  17 PWTMEEDLILINFISNHGEGVWNTIARSAGlKRTGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 72-112 3.35e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.07  E-value: 3.35e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 75107031    72 TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRT 112
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRK 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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