|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
1-248 |
0e+00 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 507.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 1 MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQN 80
Cdd:PRK12377 1 MKNIATGGVLERIRRLAPQGVQPPFRTVDEWREWQLAEGRKRSEEINRQNQQLRVEKILNRSGIQPLHRKCSFANYQVQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 81 EGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRE 160
Cdd:PRK12377 81 DGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 161 LCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPN 240
Cdd:PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWESWRPN 240
|
....*...
gi 20140551 241 VVQPGIAK 248
Cdd:PRK12377 241 VSHLRIVK 248
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
43-238 |
7.19e-27 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 103.71 E-value: 7.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 43 CEEINRQNRqlRVEKILNRSGIqPLHRkcSFSNYQVqnegqRYALSQAKSIADELMTG-----CTNFAFSGKPGTGKNHL 117
Cdd:COG1484 46 AEVAEREQR--RIERRLKAARF-PAAK--TLEDFDF-----DAQPGLDRRQILELATLdfierGENLILLGPPGTGKTHL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 118 AAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSgEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRtASMR 197
Cdd:COG1484 116 AIALGHEACRAGYRVRFTTAPDLVNELKEARADGRL-ERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDR-YERR 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 20140551 198 SVGMLTNLNYEAMKTLLGE-----RIMDRMTMNgGRWVNFNWESWR 238
Cdd:COG1484 194 STIITSNLPFSEWGEVFGDptlatAILDRLVHH-AHIIELKGESYR 238
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
95-238 |
3.43e-20 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 85.99 E-value: 3.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 95 DELMTG-----CTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGqSGEKFLRELCEVDLLVL 169
Cdd:NF038214 79 RELATLdfierAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADG-RLGRLLRRLARYDLLII 157
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 20140551 170 DEIGIQRETKNEQVVLHQIVDRR--TASMrsvgMLT-NLNYEAMKTLLGERIM-----DRMTMNgGRWVNFNWESWR 238
Cdd:NF038214 158 DELGYLPFSREGANLLFELIADRyeRGST----IITsNLPFSEWGEVFGDPTLaaailDRLVHH-AHILELKGESYR 229
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
103-238 |
2.61e-15 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 72.86 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKfLRELCEVDLLVLDEIGIQRETKNEQ 182
Cdd:pfam01695 94 NVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRK-LQQLLKPDVLILDEWGYLPLDQAEA 172
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 20140551 183 VVLHQIVDRRTASmRSVGMLTNLNYEAMKTLLGER-----IMDRMTMNGGRwVNFNWESWR 238
Cdd:pfam01695 173 NLLFQVISKRYEH-RSIILTSNLPFGEWGQVFGDAvlataILDRLLHHCHI-VPIKGESYR 231
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
103-222 |
1.79e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 57.54 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLREL---CEVDLLVLDEIGIQRETK 179
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELaekAKPGVLFIDEIDSLSRGA 100
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 20140551 180 NEQV--VLHQIVDRRTA-SMRSVGMLTNLNYEamkTLLGERIMDRM 222
Cdd:cd00009 101 QNALlrVLETLNDLRIDrENVRVIGATNRPLL---GDLDRALYDRL 143
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
56-191 |
3.62e-08 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 53.30 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 56 EKILNRSGIQPLHRKCSFSNYqVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKD--GQTVI 133
Cdd:TIGR00362 93 EAPAPPSSASGLNPKYTFDNF-VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENnpNAKVL 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 20140551 134 VVT----VADVMSALHAsyddgQSGEKFLRELCEVDLLVLDEI-------GIQRE---TKNEqvvLH----QIV---DR 191
Cdd:TIGR00362 172 YVSsekfTNDFVNALRN-----NKMEEFKEKYRSVDLLLIDDIqflagkeRTQEEffhTFNA---LHennkQIVltsDR 242
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-222 |
2.27e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.21 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHA--------SYDDGQSGEKFLRELCE------VDLLV 168
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqllliivgGKKASGSGELRLRLALAlarklkPDVLI 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 20140551 169 LDEIG---IQRETKNEQVVLHQIVDRRTASMRSVG--MLTNLNYEAMKTLLGERIMDRM 222
Cdd:smart00382 84 LDEITsllDAEQEALLLLLEELRLLLLLKSEKNLTviLTTNDEKDLGPALLRRRFDRRI 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
1-248 |
0e+00 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 507.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 1 MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQN 80
Cdd:PRK12377 1 MKNIATGGVLERIRRLAPQGVQPPFRTVDEWREWQLAEGRKRSEEINRQNQQLRVEKILNRSGIQPLHRKCSFANYQVQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 81 EGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRE 160
Cdd:PRK12377 81 DGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 161 LCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPN 240
Cdd:PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWESWRPN 240
|
....*...
gi 20140551 241 VVQPGIAK 248
Cdd:PRK12377 241 VSHLRIVK 248
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
1-241 |
2.51e-102 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 297.07 E-value: 2.51e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 1 MKNIatGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQN 80
Cdd:PRK07952 1 MKNV--GDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGRIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVEC 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 81 EGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQ-SGEKFLR 159
Cdd:PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSEtSEEQLLN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 160 ELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRP 239
Cdd:PRK07952 159 DLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRS 238
|
..
gi 20140551 240 NV 241
Cdd:PRK07952 239 RV 240
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
40-223 |
1.11e-28 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 109.34 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 40 QKRCEEINRQnRQLRVEKILNRSGIQPLHRKCSFSNYQVQNE-------GQRYALS----QAKSIAdelmtgctnFAFSG 108
Cdd:PRK08116 52 AKEREEENRE-KQRRIERLKSNSLLDEKFRNSTFENFLFDKGsekaykiARKYVKKfeemKKENVG---------LLLWG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 109 KPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDD-GQSGE-KFLRELCEVDLLVLDEIGIQRETKNEQVVLH 186
Cdd:PRK08116 122 SVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSsGKEDEnEIIRSLVNADLLILDDLGAERDTEWAREKVY 201
|
170 180 190
....*....|....*....|....*....|....*..
gi 20140551 187 QIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMT 223
Cdd:PRK08116 202 NIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRIL 238
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
43-238 |
7.19e-27 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 103.71 E-value: 7.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 43 CEEINRQNRqlRVEKILNRSGIqPLHRkcSFSNYQVqnegqRYALSQAKSIADELMTG-----CTNFAFSGKPGTGKNHL 117
Cdd:COG1484 46 AEVAEREQR--RIERRLKAARF-PAAK--TLEDFDF-----DAQPGLDRRQILELATLdfierGENLILLGPPGTGKTHL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 118 AAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSgEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRtASMR 197
Cdd:COG1484 116 AIALGHEACRAGYRVRFTTAPDLVNELKEARADGRL-ERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDR-YERR 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 20140551 198 SVGMLTNLNYEAMKTLLGE-----RIMDRMTMNgGRWVNFNWESWR 238
Cdd:COG1484 194 STIITSNLPFSEWGEVFGDptlatAILDRLVHH-AHIIELKGESYR 238
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
95-238 |
3.43e-20 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 85.99 E-value: 3.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 95 DELMTG-----CTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGqSGEKFLRELCEVDLLVL 169
Cdd:NF038214 79 RELATLdfierAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADG-RLGRLLRRLARYDLLII 157
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 20140551 170 DEIGIQRETKNEQVVLHQIVDRR--TASMrsvgMLT-NLNYEAMKTLLGERIM-----DRMTMNgGRWVNFNWESWR 238
Cdd:NF038214 158 DELGYLPFSREGANLLFELIADRyeRGST----IITsNLPFSEWGEVFGDPTLaaailDRLVHH-AHILELKGESYR 229
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
103-238 |
2.61e-15 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 72.86 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKfLRELCEVDLLVLDEIGIQRETKNEQ 182
Cdd:pfam01695 94 NVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRK-LQQLLKPDVLILDEWGYLPLDQAEA 172
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 20140551 183 VVLHQIVDRRTASmRSVGMLTNLNYEAMKTLLGER-----IMDRMTMNGGRwVNFNWESWR 238
Cdd:pfam01695 173 NLLFQVISKRYEH-RSIILTSNLPFGEWGQVFGDAvlataILDRLLHHCHI-VPIKGESYR 231
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
101-225 |
4.33e-14 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 70.31 E-value: 4.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 101 CTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHA-SYDDGQSGEKFLRELCEVDLLVLDEIGIQRETK 179
Cdd:PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREiRFNNDKELEEVYDLLINCDLLIIDDLGTEKITE 262
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 20140551 180 NEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMN 225
Cdd:PRK06835 263 FSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGN 308
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
103-222 |
1.79e-10 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 57.54 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLREL---CEVDLLVLDEIGIQRETK 179
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELaekAKPGVLFIDEIDSLSRGA 100
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 20140551 180 NEQV--VLHQIVDRRTA-SMRSVGMLTNLNYEamkTLLGERIMDRM 222
Cdd:cd00009 101 QNALlrVLETLNDLRIDrENVRVIGATNRPLL---GDLDRALYDRL 143
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
67-172 |
2.48e-09 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 56.35 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 67 LHRKCSFSNYqVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKD--GQTVIVVTVADVMSAL 144
Cdd:COG0593 1 LNPRYTFDNF-VVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTNDF 79
|
90 100
....*....|....*....|....*...
gi 20140551 145 HASYDDGqSGEKFLRELCEVDLLVLDEI 172
Cdd:COG0593 80 INAIRNN-TIEEFKEKYRSVDVLLIDDI 106
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
56-191 |
3.62e-08 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 53.30 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 56 EKILNRSGIQPLHRKCSFSNYqVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKD--GQTVI 133
Cdd:TIGR00362 93 EAPAPPSSASGLNPKYTFDNF-VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENnpNAKVL 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 20140551 134 VVT----VADVMSALHAsyddgQSGEKFLRELCEVDLLVLDEI-------GIQRE---TKNEqvvLH----QIV---DR 191
Cdd:TIGR00362 172 YVSsekfTNDFVNALRN-----NKMEEFKEKYRSVDLLLIDDIqflagkeRTQEEffhTFNA---LHennkQIVltsDR 242
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
87-192 |
5.83e-08 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 52.24 E-value: 5.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 87 LSQAKSIA----DELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSgEKFLRELC 162
Cdd:PRK08181 88 VSKAQVMAiaagDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQL-ESAIAKLD 166
|
90 100 110
....*....|....*....|....*....|
gi 20140551 163 EVDLLVLDEIGIQRETKNEQVVLHQIVDRR 192
Cdd:PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISAR 196
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
103-196 |
6.19e-08 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 52.02 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQ 182
Cdd:PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEA 183
|
90
....*....|....*.
gi 20140551 183 VVLHQIVDRR--TASM 196
Cdd:PRK09183 184 NLFFQVIAKRyeKGSM 199
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
96-173 |
4.25e-07 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 49.48 E-value: 4.25e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 20140551 96 ELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSgEKFLRELCEVDLLVLDEIG 173
Cdd:PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRL-QAELVKLGRYPLLIVDEVG 169
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
41-173 |
4.92e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 49.48 E-value: 4.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 41 KRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFA--FSGKPGTGKNHLA 118
Cdd:PRK08939 94 LPTPEKIEADEEKAIKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGlyLYGDFGVGKSYLL 173
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 20140551 119 AAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKfLRELCEVDLLVLDEIG 173
Cdd:PRK08939 174 AAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEK-IDAVKEAPVLMLDDIG 227
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-222 |
2.27e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.21 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 103 NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHA--------SYDDGQSGEKFLRELCE------VDLLV 168
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDqllliivgGKKASGSGELRLRLALAlarklkPDVLI 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 20140551 169 LDEIG---IQRETKNEQVVLHQIVDRRTASMRSVG--MLTNLNYEAMKTLLGERIMDRM 222
Cdd:smart00382 84 LDEITsllDAEQEALLLLLEELRLLLLLKSEKNLTviLTTNDEKDLGPALLRRRFDRRI 142
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
67-177 |
2.54e-06 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 46.94 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 67 LHRKCSFSNYqVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKD--GQTVIVVTVADVMSAL 144
Cdd:pfam00308 1 LNPRYTFENF-VIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNapNLRVVYLTAEEFLNDF 79
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 20140551 145 HASYDDGQsGEKFLRELCEVDLLVLDEI-------GIQRE 177
Cdd:pfam00308 80 VDAIRDNK-TNQFKEKYRNVDVLLIDDIqflagkeGTQEE 118
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
51-221 |
8.51e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 45.93 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 51 RQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQryALSQAKSIADEL------MTGCTN--FAFSGKPGTGKNHLAAAIG 122
Cdd:PRK06921 61 EQRKIERLLKASEITEAFRKLTFKNFKTEGKPQ--AIKDAYECAVEYvkdfekIQESRKnsIALLGQPGSGKTHLLTAAA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 123 NRLLKDGQT-VIVVTVADVMSALHASYDdgQSGEKfLRELCEVDLLVLDEI-----GIQRETKNEQVVLHQIVDRRTASM 196
Cdd:PRK06921 139 NELMRKKGVpVLYFPFVEGFGDLKDDFD--LLEAK-LNRMKKVEVLFIDDLfkpvnGKPRATEWQIEQMYSVLNYRYLNH 215
|
170 180
....*....|....*....|....*...
gi 20140551 197 RSVGMLTNLNYEAMKTL---LGERIMDR 221
Cdd:PRK06921 216 KPILISSELTIDELLDIdeaLGSRIVEM 243
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
73-191 |
3.07e-05 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 44.36 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 73 FSNYqVQNEGQRYALSQAKSIADELMTgctnfAFS-----GKPGTGKNHLAAAIGNRLLKD--GQTVIVVT----VADVM 141
Cdd:PRK00149 72 FDNF-VVGKSNRLAHAAALAVAENPGK-----AYNplfiyGGVGLGKTHLLHAIGNYILEKnpNAKVVYVTsekfTNDFV 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 20140551 142 SALHAsyddgQSGEKFLRELCEVDLLVLDEI-------GIQRE---TKNEqvvLH----QIV---DR 191
Cdd:PRK00149 146 NALRN-----NTMEEFKEKYRSVDVLLIDDIqflagkeRTQEEffhTFNA---LHeagkQIVltsDR 204
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
80-173 |
6.64e-05 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 43.43 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 80 NEGQRYALsqaksiaDELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVT----VADVM------------SA 143
Cdd:COG0507 126 SDEQREAV-------ALALTTRRVSVLTGGAGTGKTTTLRALLAALEALGLRVALAAptgkAAKRLsestgieartihRL 198
|
90 100 110
....*....|....*....|....*....|
gi 20140551 144 LHASYDDGQSGEKFLRELCEVDLLVLDEIG 173
Cdd:COG0507 199 LGLRPDSGRFRHNRDNPLTPADLLVVDEAS 228
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
106-183 |
5.61e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 39.58 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 106 FSGKPGTGKNHLAAAIGNRLlkdGQTVIVVTVADVMSALHasyddGQSgEKFLRELCEV------DLLVLDEI-GI--QR 176
Cdd:cd19503 39 LHGPPGTGKTLLARAVANEA---GANFLSISGPSIVSKYL-----GES-EKNLREIFEEarshapSIIFIDEIdALapKR 109
|
....*..
gi 20140551 177 ETKNEQV 183
Cdd:cd19503 110 EEDQREV 116
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
106-172 |
9.10e-04 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 39.89 E-value: 9.10e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 20140551 106 FSGKPGTGKNHLAAAIGNRLlkdGQTVIVVTVADVMSALHasyddGQSgEKFLRELCE--------VdlLVLDEI 172
Cdd:COG0464 196 LYGPPGTGKTLLARALAGEL---GLPLIEVDLSDLVSKYV-----GET-EKNLREVFDkarglapcV--LFIDEA 259
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
106-189 |
8.50e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 35.72 E-value: 8.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20140551 106 FSGKPGTGKNHLAAAIGNRLlkdGQTVIVVTVADVMSALHasyddGQSGEK------FLRELCEVdLLVLDEI---GIQR 176
Cdd:cd19481 31 LYGPPGTGKTLLAKALAGEL---GLPLIVVKLSSLLSKYV-----GESEKNlrkifeRARRLAPC-ILFIDEIdaiGRKR 101
|
90
....*....|...
gi 20140551 177 ETKNEQVVLHQIV 189
Cdd:cd19481 102 DSSGESGELRRVL 114
|
|
| |
