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Conserved domains on  [gi|60392278|sp|P68165|]
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RecName: Full=Ferredoxin

Protein Classification

ferredoxin( domain architecture ID 10797692)

ferredoxin is an iron-sulfur protein transfering electrons in a wide variety of metabolic reactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 1-96 2.81e-54

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


:

Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 163.78  E-value: 2.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLVTPDG-PVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVA 79
Cdd:TIGR02008  1 ATYKVTLVNPDGgEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                         90
                 ....*....|....*..
gi 60392278   80 YPQSDVTIETHKEEELT 96
Cdd:TIGR02008 81 YPTSDCTIETHKEEDLY 97
 
Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 1-96 2.81e-54

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 163.78  E-value: 2.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLVTPDG-PVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVA 79
Cdd:TIGR02008  1 ATYKVTLVNPDGgEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                         90
                 ....*....|....*..
gi 60392278   80 YPQSDVTIETHKEEELT 96
Cdd:TIGR02008 81 YPTSDCTIETHKEEDLY 97
PTZ00038 PTZ00038
ferredoxin; Provisional
 3-95 4.01e-50

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 156.54  E-value: 4.01e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    3 YKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQ 82
Cdd:PTZ00038  96 YNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPK 175

                         90
                 ....*....|...
gi 60392278   83 SDVTIETHKEEEL 95
Cdd:PTZ00038 176 SDCTIETHKEDEL 188
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 5-88 7.06e-30

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 101.70  E-value: 7.06e-30
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278  5 VKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSD 84
Cdd:cd00207  1 VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG 80


               ....
gi 60392278 85 VTIE 88
Cdd:cd00207 81 LVIE 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
15-90 9.31e-28

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 96.46  E-value: 9.31e-28
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 60392278 15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETH 90
Cdd:COG0633 12 TVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVELP 87
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
8-82 1.40e-17

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 70.25  E-value: 1.40e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60392278    8 VTPDG-PVEFNCPDDVY-ILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTvDQSDGNYLDDDQMADGFV-LTCVAYPQ 82
Cdd:pfam00111  1 VTINGkGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
 
Name Accession Description Interval E-value
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 1-96 2.81e-54

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 163.78  E-value: 2.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLVTPDG-PVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVA 79
Cdd:TIGR02008  1 ATYKVTLVNPDGgEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80

                         90
                 ....*....|....*..
gi 60392278   80 YPQSDVTIETHKEEELT 96
Cdd:TIGR02008 81 YPTSDCTIETHKEEDLY 97
PTZ00038 PTZ00038
ferredoxin; Provisional
 3-95 4.01e-50

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 156.54  E-value: 4.01e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    3 YKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQ 82
Cdd:PTZ00038  96 YNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPK 175

                         90
                 ....*....|...
gi 60392278   83 SDVTIETHKEEEL 95
Cdd:PTZ00038 176 SDCTIETHKEDEL 188
petF CHL00134
ferredoxin; Validated
 1-95 6.46e-50

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 152.57  E-value: 6.46e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278   1 ATYKVKLVT-PDG-PVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCV 78
Cdd:CHL00134  2 ATYKVTLLSeEEGiDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCV 81

                        90
                ....*....|....*..
gi 60392278  79 AYPQSDVTIETHKEEEL 95
Cdd:CHL00134 82 AYPTSDCTILTHQEEEL 98
PLN03136 PLN03136
Ferredoxin; Provisional
 1-95 6.19e-49

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 152.21  E-value: 6.19e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAY 80
Cdd:PLN03136  53 ATYKVKFITPEGEQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAY 132

                         90
                 ....*....|....*
gi 60392278   81 PQSDVTIETHKEEEL 95
Cdd:PLN03136 133 PTSDVVIETHKEEAI 147
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 5-88 7.06e-30

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 101.70  E-value: 7.06e-30
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278  5 VKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSD 84
Cdd:cd00207  1 VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG 80


               ....
gi 60392278 85 VTIE 88
Cdd:cd00207 81 LVIE 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
15-90 9.31e-28

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 96.46  E-value: 9.31e-28
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 60392278 15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETH 90
Cdd:COG0633 12 TVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSDEERAAGSRLACQARPTSDLVVELP 87
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 1-88 7.84e-21

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 84.15  E-value: 7.84e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLvTPDGpVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDG--NYLDDDQMADGFVLTCV 78
Cdd:PRK07609   1 MSFQVTL-QPSG-RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHqaSALSGEERAAGEALTCC 78

                         90
                 ....*....|
gi 60392278   79 AYPQSDVTIE 88
Cdd:PRK07609  79 AKPLSDLVLE 88
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
8-82 1.40e-17

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 70.25  E-value: 1.40e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60392278    8 VTPDG-PVEFNCPDDVY-ILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTvDQSDGNYLDDDQMADGFV-LTCVAYPQ 82
Cdd:pfam00111  1 VTINGkGVTIEVPDGETtLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGE-DQSDQSFLEDDELAAGYVvLACQTYPK 77
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 2-97 2.95e-11

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 57.89  E-value: 2.95e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278   2 TYKVKLvTPDGpVEFNCPDDVYILDQAEEEGHDLPYSCR-AGSCSSCAGKVTAGT---VDQSDGNYLDDDQMADGFVLTC 77
Cdd:COG3894   3 KVKVTF-LPSG-KRVEVEAGTTLLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEfspVTEEERRLLSPEELAEGYRLAC 80

                        90       100
                ....*....|....*....|
gi 60392278  78 VAYPQSDVTIETHKEEELTG 97
Cdd:COG3894  81 QARVLGDLVVEVPPESRLDK 100
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 1-88 1.07e-09

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 53.17  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEegHDLPY--SCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCV 78
Cdd:PRK10684 245 ATSGLTFTKLQPAREFYAPVGTTLLEALES--NKVPVvaACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACS 322

                         90
                 ....*....|
gi 60392278   79 AYPQSDVTIE 88
Cdd:PRK10684 323 CHPQGDLVLA 332
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
24-89 1.60e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 47.03  E-value: 1.60e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 60392278   24 ILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIET 89
Cdd:PRK05713  19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEV 84
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
2-86 9.63e-06

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 42.04  E-value: 9.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60392278    2 TYKVKLVTPDGPVEF-NCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQsdgNYLDDD-----QMADGFVL 75
Cdd:PRK11872   2 NHKVALSFADGKTLFfPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQ---DYVDEDalserDLAQRKML 78

                         90
                 ....*....|.
gi 60392278   76 TCVAYPQSDVT 86
Cdd:PRK11872  79 ACQTRVKSDAA 89
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
15-88 8.70e-05

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 37.79  E-value: 8.70e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 60392278  15 EFNCPDDVYILDQAEEeGHDLP--YSCRAGSCSSCAGKVTAGTVDqsdgnYLDDDQ--MADGFVLTCVAYPQSDVTIE 88
Cdd:PRK10713 12 QLLCQDEHPSLLAALE-SHNVAveYQCREGYCGSCRTRLVAGQVD-----WIAEPLafIQPGEILPCCCRAKGDIEIE 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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