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Conserved domains on  [gi|52783753|sp|P63161|]
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RecName: Full=Potassium voltage-gated channel subfamily E member 2; AltName: Full=MinK-related peptide 1; Short=MiRP1; AltName: Full=Minimum potassium ion channel-related peptide 1; AltName: Full=Potassium channel subunit beta MiRP1

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ISK_Channel super family cl03426
Slow voltage-gated potassium channel;
50-108 7.67e-12

Slow voltage-gated potassium channel;


The actual alignment was detected with superfamily member pfam02060:

Pssm-ID: 460432  Cd Length: 126  Bit Score: 57.84  E-value: 7.67e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783753    50 ILYLMVMIGMFAFIVVAILVSTVKSKRREHSQDPYHQYIVED-WQQKYRSQILH--LEDSKA 108
Cdd:pfam02060  44 ALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYIESDtWQEKDKAYFQArvLESYKA 105
 
Name Accession Description Interval E-value
ISK_Channel pfam02060
Slow voltage-gated potassium channel;
50-108 7.67e-12

Slow voltage-gated potassium channel;


Pssm-ID: 460432  Cd Length: 126  Bit Score: 57.84  E-value: 7.67e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783753    50 ILYLMVMIGMFAFIVVAILVSTVKSKRREHSQDPYHQYIVED-WQQKYRSQILH--LEDSKA 108
Cdd:pfam02060  44 ALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYIESDtWQEKDKAYFQArvLESYKA 105
 
Name Accession Description Interval E-value
ISK_Channel pfam02060
Slow voltage-gated potassium channel;
50-108 7.67e-12

Slow voltage-gated potassium channel;


Pssm-ID: 460432  Cd Length: 126  Bit Score: 57.84  E-value: 7.67e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783753    50 ILYLMVMIGMFAFIVVAILVSTVKSKRREHSQDPYHQYIVED-WQQKYRSQILH--LEDSKA 108
Cdd:pfam02060  44 ALYILMVLGFFGFFTLGIMLSYIRSKKLEHSHDPFNVYIESDtWQEKDKAYFQArvLESYKA 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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