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Conserved domains on  [gi|6685910|sp|P56806|]
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RecName: Full=Small ribosomal subunit protein bS16cz; AltName: Full=30S ribosomal protein S16, chloroplastic

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000001)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
1-79 3.49e-46

ribosomal protein S16


:

Pssm-ID: 176950  Cd Length: 82  Bit Score: 142.09  E-value: 3.49e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6685910    1 MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKAGIFTE 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKE 79
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
1-79 3.49e-46

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 142.09  E-value: 3.49e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6685910    1 MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKAGIFTE 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKE 79
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
2-77 3.92e-29

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 98.85  E-value: 3.92e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6685910     2 VKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ--TFLNLSAILDFLKKGAQPTRTAHDISKKAGIF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
1-74 5.77e-24

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 85.48  E-value: 5.77e-24
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6685910   1 MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITN--QTFLNLSAILDFLKKGAQPTRTAHDISKKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.72e-16

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 66.24  E-value: 1.72e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6685910     8 RCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITN----QTFLNLSAILDFLKKGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
1-79 3.49e-46

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 142.09  E-value: 3.49e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6685910    1 MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSAILDFLKKGAQPTRTAHDISKKAGIFTE 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKE 79
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
2-77 3.92e-29

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 98.85  E-value: 3.92e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6685910     2 VKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ--TFLNLSAILDFLKKGAQPTRTAHDISKKAGIF 77
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
1-74 5.77e-24

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 85.48  E-value: 5.77e-24
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6685910   1 MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITN--QTFLNLSAILDFLKKGAQPTRTAHDISKKA 74
Cdd:COG0228  1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
2-77 2.56e-19

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 76.74  E-value: 2.56e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6685910     2 VKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITN--QTFLNLSAILDFLKKGAQPTRTAHDISKKAGIF 77
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNpaTVDLNFDRAVYWLMNGAQPTDTARNILSYEGVL 80
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-64 1.72e-16

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 66.24  E-value: 1.72e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6685910     8 RCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITN----QTFLNLSAILDFLKKGAQPT 64
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14520
30S ribosomal protein S16; Provisional
2-75 1.60e-11

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 55.85  E-value: 1.60e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6685910     2 VKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTFLNLSA--ILDFLKKGAQPTRTAHDISKKAG 75
Cdd:PRK14520   3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSerAQYWLSVGAQPTEPVLALLKITG 78
rpsP PRK14522
30S ribosomal protein S16; Provisional
2-79 4.91e-08

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 46.14  E-value: 4.91e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6685910     2 VKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQTF-LNLSAILDFLKKGAQPTRTAHDISKKA--GIFT 78
Cdd:PRK14522   3 LKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYqLKSERIFYWLNQGAELTEKAGALVKQGapGVYS 82

                 .
gi 6685910    79 E 79
Cdd:PRK14522  83 E 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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