NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1730906|sp|P54165|]
View 

RecName: Full=Uncharacterized protein YpeQ

Protein Classification

zf-C2HCIx2C domain-containing protein( domain architecture ID 10566706)

zf-C2HCIx2C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 1-58 6.42e-26

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


:

Pssm-ID: 402422  Cd Length: 58  Bit Score: 89.31  E-value: 6.42e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1730906     1 MDKKMIFKELTELHDEYCKDCFIKKQFRKEFGKTYAHSFCINKCTVGEKLKQYGDVLT 58
Cdd:pfam10782  1 MDRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 1-58 6.42e-26

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


Pssm-ID: 402422  Cd Length: 58  Bit Score: 89.31  E-value: 6.42e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1730906     1 MDKKMIFKELTELHDEYCKDCFIKKQFRKEFGKTYAHSFCINKCTVGEKLKQYGDVLT 58
Cdd:pfam10782  1 MDRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Name Accession Description Interval E-value
zf-C2HCIx2C pfam10782
Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with ...
 1-58 6.42e-26

Zinc-finger; This bacterial family of proteins is a zinc-finger domain of the C2HC type with an additional cysteine.


Pssm-ID: 402422  Cd Length: 58  Bit Score: 89.31  E-value: 6.42e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1730906     1 MDKKMIFKELTELHDEYCKDCFIKKQFRKEFGKTYAHSFCINKCTVGEKLKQYGDVLT 58
Cdd:pfam10782  1 MDRKELLKEIDELMETYCDGCFLKKHFRKEKGKTYAHSFCINECTVGEKLKQYGNELT 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH