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Conserved domains on  [gi|2506660|sp|P25907|]
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RecName: Full=Uncharacterized protein YdbD

Protein Classification

DUF2773 domain-containing bactofilin( domain architecture ID 11150367)

DUF2773 domain-containing bactofilin similar to Escherichia coli uncharacterized protein YdbD, which may play a role in methylglyoxal susceptibility

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2773 pfam10971
Protein of unknown function (DUF2773); This family of proteins with unknown function appears ...
 688-768 9.45e-46

Protein of unknown function (DUF2773); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


:

Pssm-ID: 287885  Cd Length: 81  Bit Score: 157.93  E-value: 9.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660    688 ALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDEL 767
Cdd:pfam10971   1 ALNNAHTPAALLAAEIDPEDRILAINNPQFAADVKKARLKEDPLLLLELENPDLDLLRDLAKNGATRAIREEAMHKLDEK 80


                  .
gi 2506660    768 Y 768
Cdd:pfam10971  81 Q 81
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 75-164 3.01e-04

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


:

Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 40.09  E-value: 3.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660     75 GDLV----VEGNIESNQKLIVLGNLTVKGNISTFSLsnpwVILGNVtatnivadsplliTGSINASGLVFIDSyydnPST 150
Cdd:pfam04519   9 GDLRidgkVEGNITSKGTLVIGEGGRVEGDIKAESV----VIAGTV-------------EGNITASEKLELLS----TAR 67

                          90
                  ....*....|....
gi 2506660    151 IKGSINARGIFIND 164
Cdd:pfam04519  68 VEGDIKTGSLEIEE 81
 
Name Accession Description Interval E-value
DUF2773 pfam10971
Protein of unknown function (DUF2773); This family of proteins with unknown function appears ...
 688-768 9.45e-46

Protein of unknown function (DUF2773); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 287885  Cd Length: 81  Bit Score: 157.93  E-value: 9.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660    688 ALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDEL 767
Cdd:pfam10971   1 ALNNAHTPAALLAAEIDPEDRILAINNPQFAADVKKARLKEDPLLLLELENPDLDLLRDLAKNGATRAIREEAMHKLDEK 80


                  .
gi 2506660    768 Y 768
Cdd:pfam10971  81 Q 81
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 75-164 3.01e-04

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 40.09  E-value: 3.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660     75 GDLV----VEGNIESNQKLIVLGNLTVKGNISTFSLsnpwVILGNVtatnivadsplliTGSINASGLVFIDSyydnPST 150
Cdd:pfam04519   9 GDLRidgkVEGNITSKGTLVIGEGGRVEGDIKAESV----VIAGTV-------------EGNITASEKLELLS----TAR 67

                          90
                  ....*....|....
gi 2506660    151 IKGSINARGIFIND 164
Cdd:pfam04519  68 VEGDIKTGSLEIEE 81
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
75-164 1.55e-03

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 39.11  E-value: 1.55e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660   75 GDLV----VEGNIESNQKLIVLGNLTVKGNISTFSLsnpwVILGNVtatnivadsplliTGSINASGLVFIDSyydnPST 150
Cdd:COG1664  31 GDLRidgtVEGDITAEGTLVIGEGGVVEGDIEADNV----VINGTV-------------EGNITASEKLELLS----TAR 89

                        90
                ....*....|....
gi 2506660  151 IKGSINARGIFIND 164
Cdd:COG1664  90 VEGDITAGSLEIEE 103
 
Name Accession Description Interval E-value
DUF2773 pfam10971
Protein of unknown function (DUF2773); This family of proteins with unknown function appears ...
 688-768 9.45e-46

Protein of unknown function (DUF2773); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 287885  Cd Length: 81  Bit Score: 157.93  E-value: 9.45e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660    688 ALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDEL 767
Cdd:pfam10971   1 ALNNAHTPAALLAAEIDPEDRILAINNPQFAADVKKARLKEDPLLLLELENPDLDLLRDLAKNGATRAIREEAMHKLDEK 80


                  .
gi 2506660    768 Y 768
Cdd:pfam10971  81 Q 81
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 75-164 3.01e-04

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 40.09  E-value: 3.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660     75 GDLV----VEGNIESNQKLIVLGNLTVKGNISTFSLsnpwVILGNVtatnivadsplliTGSINASGLVFIDSyydnPST 150
Cdd:pfam04519   9 GDLRidgkVEGNITSKGTLVIGEGGRVEGDIKAESV----VIAGTV-------------EGNITASEKLELLS----TAR 67

                          90
                  ....*....|....
gi 2506660    151 IKGSINARGIFIND 164
Cdd:pfam04519  68 VEGDIKTGSLEIEE 81
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
75-164 1.55e-03

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 39.11  E-value: 1.55e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506660   75 GDLV----VEGNIESNQKLIVLGNLTVKGNISTFSLsnpwVILGNVtatnivadsplliTGSINASGLVFIDSyydnPST 150
Cdd:COG1664  31 GDLRidgtVEGDITAEGTLVIGEGGVVEGDIEADNV----VINGTV-------------EGNITASEKLELLS----TAR 89

                        90
                ....*....|....
gi 2506660  151 IKGSINARGIFIND 164
Cdd:COG1664  90 VEGDITAGSLEIEE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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