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Conserved domains on  [gi|124044|sp|P22547|]
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RecName: Full=Transactivator/viroplasmin protein; Short=Tav; AltName: Full=Inclusion body matrix protein

Protein Classification

RNase H1/viroplasmin domain-containing protein( domain architecture ID 10483795)

RNase H1/viroplasmin domain-containing protein similar to Caulimovirus transactivator/viroplasmin protein that enhances the ribosomal termination-reinitiation event, and to the hybrid binding domain of human RNase H1 that binds preferentially to RNA/DNA hybrids

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 140-182 1.93e-10

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


:

Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 55.88  E-value: 1.93e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 124044     140 YYVVYNGPHAGIYDDWGCTKAATNGVPGVAQKKFATITEARAA 182
Cdd:pfam01693   2 YYAVAKGRKPGIYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
 
Name Accession Description Interval E-value
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 140-182 1.93e-10

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 55.88  E-value: 1.93e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 124044     140 YYVVYNGPHAGIYDDWGCTKAATNGVPGVAQKKFATITEARAA 182
Cdd:pfam01693   2 YYAVAKGRKPGIYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
Rnh1 COG3341
Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains [General function ...
 140-182 4.94e-07

Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains [General function prediction only];


Pssm-ID: 442570 [Multi-domain]  Cd Length: 203  Bit Score: 50.24  E-value: 4.94e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 124044   140 YYVVYNGPHAGIYDDWGCTKAATNGVPGVAQKKFATITEARAA 182
Cdd:COG3341   5 FYAVWKGRKPGIYTTWDECKAQVKGFPGAKYKSFKTKEEAEAA 47
 
Name Accession Description Interval E-value
Cauli_VI pfam01693
Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. ...
 140-182 1.93e-10

Caulimovirus viroplasmin; This family consists of various caulimovirus viroplasmin proteins. The viroplasmin protein is encoded by gene VI and is the main component of viral inclusion bodies or viroplasms. Inclusions are the site of viral assembly, DNA synthesis and accumulation. Two domains exist within gene VI corresponding approximately to the 5' third and middle third of gene VI, these influence systemic infection in a light-dependent manner.


Pssm-ID: 460297 [Multi-domain]  Cd Length: 44  Bit Score: 55.88  E-value: 1.93e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 124044     140 YYVVYNGPHAGIYDDWGCTKAATNGVPGVAQKKFATITEARAA 182
Cdd:pfam01693   2 YYAVAKGRKPGIYTTWDECKAQVKGFPGAKYKSFKTREEAEAF 44
Rnh1 COG3341
Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains [General function ...
 140-182 4.94e-07

Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains [General function prediction only];


Pssm-ID: 442570 [Multi-domain]  Cd Length: 203  Bit Score: 50.24  E-value: 4.94e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 124044   140 YYVVYNGPHAGIYDDWGCTKAATNGVPGVAQKKFATITEARAA 182
Cdd:COG3341   5 FYAVWKGRKPGIYTTWDECKAQVKGFPGAKYKSFKTKEEAEAA 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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