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Conserved domains on  [gi|3183523|sp|P11835|]
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RecName: Full=Integrin beta-2; AltName: Full=Cell surface adhesion glycoproteins LFA-1/CR3/p150,95 subunit beta; AltName: Full=Complement receptor C3 subunit beta; AltName: CD_antigen=CD18; Flags: Precursor

Protein Classification

integrin beta-8; vWA domain-containing protein( domain architecture ID 10640637)

integrin beta-8 is a component of integrin alpha-V:beta-8 (ITGAV:ITGB8), which is a receptor for fibronectin| vWA (von Willebrand factor type A) domain-containing protein may be involved in one of a wide variety of important cellular functions, including basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and immune defenses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
INB smart00187
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins ...
 33-448 0e+00

Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).


:

Pssm-ID: 197563 [Multi-domain]  Cd Length: 423  Bit Score: 680.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523      33 SCRDCIQSGPGCSWCQKLNFTGPGepdSLRCDTRAQLLLKGCPADDIMDPRSIAN-------PEFDQRGQRKQLSPQKVT 105
Cdd:smart00187   1 SCEECIQSGPNCAWCTDENFTSGG---SARCDTRANLLAKGCSPESIENPASSAEvledkplSDKGSGGQAVQVSPQRVR 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     106 LYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFVNTHP 185
Cdd:smart00187  78 LKLRPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHP 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     186 EKLRNPCPNKEKACQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAACPEEIGWRNV-TRLLVFAT 264
Cdd:smart00187 158 EKLENPCPNYNKTCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDaRRLLVFST 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     265 DDGFHFAGDGKLGAILTPNDGRCHLE-DNMYKRSNEFDYPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAV 343
Cdd:smart00187 238 DAGFHFAGDGKLGGIVTPNDGQCHLDnNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSV 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     344 GELSDDSSNVVQLIKNAYYKLSSRVFLDHSTLPDTLKVTYDSFCSNGASSIGKSrgDCDGVQINNPVTFQVKVMASECI- 422
Cdd:smart00187 318 GELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTSSCPGGVTGPGTR--KCEGVKIGDTVSFEVTVTATKCPp 395

                          410       420
                   ....*....|....*....|....*...
gi 3183523     423 --QEQSFVIRALGFTDTVTVQVRPQCEC 448
Cdd:smart00187 396 edQEQSIRIRPVGFSETLEVEVTFLCDC 423
Integrin_B_tail pfam07965
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ...
 627-701 2.52e-16

Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.


:

Pssm-ID: 462325  Cd Length: 84  Bit Score: 74.24  E-value: 2.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    627 HTSCAECLKFDKGPF-EKNCSVQCAGMTLQTIPLKKK------PCKERDSEGCWITYTLQQKDGRNiYNIHVEDSLECVK 699
Cdd:pfam07965   4 KKSCVECQAFKTGPLkEKNCSRNCKFEIILVEVLKEDeepgavLCSFKDEDDCWFTFTYYEDESGK-YVVHVQKERECPP 82


                  ..
gi 3183523    700 GP 701
Cdd:pfam07965  83 GP 84
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 729-768 2.87e-16

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


:

Pssm-ID: 462580  Cd Length: 41  Bit Score: 72.98  E-value: 2.87e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 3183523    729 THLTDLREYRRFEKEKLKSQWN-NDNPLFKSATTTVMNPKF 768
Cdd:pfam08725   1 TTIHDRREYAKFEKERKNAKWTtGENPLYKSATTTFENPTY 41
gliding_CglD super family cl45602
adventurous gliding motility lipoprotein CglD;
532-631 1.69e-03

adventurous gliding motility lipoprotein CglD;


The actual alignment was detected with superfamily member NF033765:

Pssm-ID: 468178 [Multi-domain]  Cd Length: 1124  Bit Score: 41.84  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    532 GQYCECDNVNCERYNSQVCGGS--DRGSCNCGKCSCK--------PGY--EGSACQCQrSTTGCLNarlveCSGRGHCQC 599
Cdd:NF033765 1019 GQVCNTDRAVCAFTCAPDCGGTcgTFETCNTSTCACScvqsatcaPGFkfDATACGCV-CDTGALN-----CGSNYQADA 1092

                          90       100       110
                  ....*....|....*....|....*....|...
gi 3183523    600 NRCICdegyqppMCE-DCPSCGSHCRDNHTSCA 631
Cdd:NF033765 1093 NACAC-------ACKdDCGGCGAGTKCNVSTCA 1118
 
Name Accession Description Interval E-value
INB smart00187
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins ...
 33-448 0e+00

Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).


Pssm-ID: 197563 [Multi-domain]  Cd Length: 423  Bit Score: 680.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523      33 SCRDCIQSGPGCSWCQKLNFTGPGepdSLRCDTRAQLLLKGCPADDIMDPRSIAN-------PEFDQRGQRKQLSPQKVT 105
Cdd:smart00187   1 SCEECIQSGPNCAWCTDENFTSGG---SARCDTRANLLAKGCSPESIENPASSAEvledkplSDKGSGGQAVQVSPQRVR 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     106 LYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFVNTHP 185
Cdd:smart00187  78 LKLRPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHP 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     186 EKLRNPCPNKEKACQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAACPEEIGWRNV-TRLLVFAT 264
Cdd:smart00187 158 EKLENPCPNYNKTCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDaRRLLVFST 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     265 DDGFHFAGDGKLGAILTPNDGRCHLE-DNMYKRSNEFDYPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAV 343
Cdd:smart00187 238 DAGFHFAGDGKLGGIVTPNDGQCHLDnNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSV 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     344 GELSDDSSNVVQLIKNAYYKLSSRVFLDHSTLPDTLKVTYDSFCSNGASSIGKSrgDCDGVQINNPVTFQVKVMASECI- 422
Cdd:smart00187 318 GELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTSSCPGGVTGPGTR--KCEGVKIGDTVSFEVTVTATKCPp 395

                          410       420
                   ....*....|....*....|....*...
gi 3183523     423 --QEQSFVIRALGFTDTVTVQVRPQCEC 448
Cdd:smart00187 396 edQEQSIRIRPVGFSETLEVEVTFLCDC 423
Integrin_beta pfam00362
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have ...
 123-368 2.46e-165

Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have also been found in cyanobacteria, probably due to horizontal gene transfer. This domain corresponds to the integrin beta VWA domain.


Pssm-ID: 459781  Cd Length: 248  Bit Score: 476.99  E-value: 2.46e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    123 AKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFVNTHPEKLRNPCPNKEKACQPP 202
Cdd:pfam00362   1 AEDYPVDLYYLMDLSYSMKDDLDNLKKLGNDLAEEMRNITSNFRLGFGSFVDKPVMPYISTRPEKLKNPCPGENEQCDPP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    203 FAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 281
Cdd:pfam00362  81 FGFRHVLSLTNDIEEFTEEVQKQRISGNLDAPEGGFDAIMQAAVCKDQIGWRNeARRLLVFSTDAGFHYAGDGKLAGIVT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    282 PNDGRCHLE-DNMYKRSNEFDYPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAVGELSDDSSNVVQLIKNA 360
Cdd:pfam00362 161 PNDGQCHLDsNGEYTKSTEQDYPSLGQLVRKLSENNINPIFAVTEEQYSLYEKLSKLIPGSSVGVLSEDSSNIVQLIKEA 240


                  ....*...
gi 3183523    361 YYKLSSRV 368
Cdd:pfam00362 241 YEKIRSKV 248
Integrin_B_tail pfam07965
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ...
 627-701 2.52e-16

Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.


Pssm-ID: 462325  Cd Length: 84  Bit Score: 74.24  E-value: 2.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    627 HTSCAECLKFDKGPF-EKNCSVQCAGMTLQTIPLKKK------PCKERDSEGCWITYTLQQKDGRNiYNIHVEDSLECVK 699
Cdd:pfam07965   4 KKSCVECQAFKTGPLkEKNCSRNCKFEIILVEVLKEDeepgavLCSFKDEDDCWFTFTYYEDESGK-YVVHVQKERECPP 82


                  ..
gi 3183523    700 GP 701
Cdd:pfam07965  83 GP 84
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 729-768 2.87e-16

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


Pssm-ID: 462580  Cd Length: 41  Bit Score: 72.98  E-value: 2.87e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 3183523    729 THLTDLREYRRFEKEKLKSQWN-NDNPLFKSATTTVMNPKF 768
Cdd:pfam08725   1 TTIHDRREYAKFEKERKNAKWTtGENPLYKSATTTFENPTY 41
gliding_CglD NF033765
adventurous gliding motility lipoprotein CglD;
532-631 1.69e-03

adventurous gliding motility lipoprotein CglD;


Pssm-ID: 468178 [Multi-domain]  Cd Length: 1124  Bit Score: 41.84  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    532 GQYCECDNVNCERYNSQVCGGS--DRGSCNCGKCSCK--------PGY--EGSACQCQrSTTGCLNarlveCSGRGHCQC 599
Cdd:NF033765 1019 GQVCNTDRAVCAFTCAPDCGGTcgTFETCNTSTCACScvqsatcaPGFkfDATACGCV-CDTGALN-----CGSNYQADA 1092

                          90       100       110
                  ....*....|....*....|....*....|...
gi 3183523    600 NRCICdegyqppMCE-DCPSCGSHCRDNHTSCA 631
Cdd:NF033765 1093 NACAC-------ACKdDCGGCGAGTKCNVSTCA 1118
 
Name Accession Description Interval E-value
INB smart00187
Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins ...
 33-448 0e+00

Integrin beta subunits (N-terminal portion of extracellular region); Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).


Pssm-ID: 197563 [Multi-domain]  Cd Length: 423  Bit Score: 680.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523      33 SCRDCIQSGPGCSWCQKLNFTGPGepdSLRCDTRAQLLLKGCPADDIMDPRSIAN-------PEFDQRGQRKQLSPQKVT 105
Cdd:smart00187   1 SCEECIQSGPNCAWCTDENFTSGG---SARCDTRANLLAKGCSPESIENPASSAEvledkplSDKGSGGQAVQVSPQRVR 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     106 LYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFVNTHP 185
Cdd:smart00187  78 LKLRPGEPQNFTLTVRQAEDYPVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTHP 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     186 EKLRNPCPNKEKACQPPFAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAACPEEIGWRNV-TRLLVFAT 264
Cdd:smart00187 158 EKLENPCPNYNKTCEPPYGFKHVLSLTDDTDEFNEEVGKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDaRRLLVFST 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     265 DDGFHFAGDGKLGAILTPNDGRCHLE-DNMYKRSNEFDYPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAV 343
Cdd:smart00187 238 DAGFHFAGDGKLGGIVTPNDGQCHLDnNGEYTMSTTQDYPSIGQLAQKLAENNINPIFAVTKKQVSLYKELSALIPGSSV 317

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523     344 GELSDDSSNVVQLIKNAYYKLSSRVFLDHSTLPDTLKVTYDSFCSNGASSIGKSrgDCDGVQINNPVTFQVKVMASECI- 422
Cdd:smart00187 318 GELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYTSSCPGGVTGPGTR--KCEGVKIGDTVSFEVTVTATKCPp 395

                          410       420
                   ....*....|....*....|....*...
gi 3183523     423 --QEQSFVIRALGFTDTVTVQVRPQCEC 448
Cdd:smart00187 396 edQEQSIRIRPVGFSETLEVEVTFLCDC 423
Integrin_beta pfam00362
Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have ...
 123-368 2.46e-165

Integrin beta chain VWA domain; Integrins have been found in animals and their homologs have also been found in cyanobacteria, probably due to horizontal gene transfer. This domain corresponds to the integrin beta VWA domain.


Pssm-ID: 459781  Cd Length: 248  Bit Score: 476.99  E-value: 2.46e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    123 AKGYPIDLYYLMDLSYSMLDDLNNVKKLGGDLLQALNEITESGRIGFGSFVDKTVLPFVNTHPEKLRNPCPNKEKACQPP 202
Cdd:pfam00362   1 AEDYPVDLYYLMDLSYSMKDDLDNLKKLGNDLAEEMRNITSNFRLGFGSFVDKPVMPYISTRPEKLKNPCPGENEQCDPP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    203 FAFRHVLKLTDNSNQFQTEVGKQLISGNLDAPEGGLDAIMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 281
Cdd:pfam00362  81 FGFRHVLSLTNDIEEFTEEVQKQRISGNLDAPEGGFDAIMQAAVCKDQIGWRNeARRLLVFSTDAGFHYAGDGKLAGIVT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    282 PNDGRCHLE-DNMYKRSNEFDYPSVGQLAHKLSESNIQPIFAVTKKMVKTYEKLTEIIPKSAVGELSDDSSNVVQLIKNA 360
Cdd:pfam00362 161 PNDGQCHLDsNGEYTKSTEQDYPSLGQLVRKLSENNINPIFAVTEEQYSLYEKLSKLIPGSSVGVLSEDSSNIVQLIKEA 240


                  ....*...
gi 3183523    361 YYKLSSRV 368
Cdd:pfam00362 241 YEKIRSKV 248
Integrin_B_tail pfam07965
Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are ...
 627-701 2.52e-16

Integrin beta tail domain; This is the beta tail domain of the Integrin protein. Integrins are receptors which are involved in cell-cell and cell-extracellular matrix interactions.


Pssm-ID: 462325  Cd Length: 84  Bit Score: 74.24  E-value: 2.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    627 HTSCAECLKFDKGPF-EKNCSVQCAGMTLQTIPLKKK------PCKERDSEGCWITYTLQQKDGRNiYNIHVEDSLECVK 699
Cdd:pfam07965   4 KKSCVECQAFKTGPLkEKNCSRNCKFEIILVEVLKEDeepgavLCSFKDEDDCWFTFTYYEDESGK-YVVHVQKERECPP 82


                  ..
gi 3183523    700 GP 701
Cdd:pfam07965  83 GP 84
Integrin_b_cyt pfam08725
Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which ...
 729-768 2.87e-16

Integrin beta cytoplasmic domain; Integrins are a group of transmembrane proteins which function as extracellular matrix receptors and in cell adhesion. Integrins are ubiquitously expressed and are heterodimeric, each composed of an alpha and beta subunit. Several variations of the the alpha and beta subunits exist, and association of different alpha and beta subunits can have different a different binding specificity. This domain corresponds to the cytoplasmic domain of the beta subunit.


Pssm-ID: 462580  Cd Length: 41  Bit Score: 72.98  E-value: 2.87e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 3183523    729 THLTDLREYRRFEKEKLKSQWN-NDNPLFKSATTTVMNPKF 768
Cdd:pfam08725   1 TTIHDRREYAKFEKERKNAKWTtGENPLYKSATTTFENPTY 41
PSI_integrin pfam17205
Integrin plexin domain; This short disulphide rich domain is found at the N-terminus of ...
 24-75 2.63e-10

Integrin plexin domain; This short disulphide rich domain is found at the N-terminus of integrin beta chains.


Pssm-ID: 465380  Cd Length: 47  Bit Score: 56.02  E-value: 2.63e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 3183523     24 QECTKYKvSSCRDCIQSGPGCSWCQKLNFTgpgePDSLRCDTRAQLLLKGCP 75
Cdd:pfam17205   1 NRCTSAS-TSCEECIQSGPDCAWCTDENFT----SGSPRCDTRENLLARGCS 47
gliding_CglD NF033765
adventurous gliding motility lipoprotein CglD;
532-631 1.69e-03

adventurous gliding motility lipoprotein CglD;


Pssm-ID: 468178 [Multi-domain]  Cd Length: 1124  Bit Score: 41.84  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3183523    532 GQYCECDNVNCERYNSQVCGGS--DRGSCNCGKCSCK--------PGY--EGSACQCQrSTTGCLNarlveCSGRGHCQC 599
Cdd:NF033765 1019 GQVCNTDRAVCAFTCAPDCGGTcgTFETCNTSTCACScvqsatcaPGFkfDATACGCV-CDTGALN-----CGSNYQADA 1092

                          90       100       110
                  ....*....|....*....|....*....|...
gi 3183523    600 NRCICdegyqppMCE-DCPSCGSHCRDNHTSCA 631
Cdd:NF033765 1093 NACAC-------ACKdDCGGCGAGTKCNVSTCA 1118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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