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Conserved domains on  [gi|857338648|sp|P0CT62|]
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RecName: Full=Small ribosomal subunit protein eS30A; AltName: Full=40S ribosomal protein S30-A

Protein Classification

eS30 family ribosomal protein( domain architecture ID 10520706)

eS30 family ribosomal protein is synthesized as a C-terminal extension protein (CEP) of a ubiquitin-like protein

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803|29401259

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-61 1.23e-22

Ribosomal protein S30;


:

Pssm-ID: 398432  Cd Length: 58  Bit Score: 80.77  E-value: 1.23e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857338648   3 KVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNmvGGKRRMNPSS 61
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVP--GGGRKKGPNS 57
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-61 1.23e-22

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 80.77  E-value: 1.23e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857338648   3 KVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNmvGGKRRMNPSS 61
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVP--GGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-58 2.85e-14

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 60.17  E-value: 2.85e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 857338648  1 MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMN 58
Cdd:PTZ00467  1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKVHMN 58
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 5-45 1.71e-05

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 37.29  E-value: 1.71e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 857338648  5 HGSLARAGKVKSQTPKVEKQEKpKQPKGRAYKRLLYVRRFV 45
Cdd:COG4919   4 HGSLTKAGKVRSQTPKIPAKPR-KNPPPRVRNRREYRKRFV 43
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-61 1.23e-22

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 80.77  E-value: 1.23e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857338648   3 KVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNmvGGKRRMNPSS 61
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVP--GGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-58 2.85e-14

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 60.17  E-value: 2.85e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 857338648  1 MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMN 58
Cdd:PTZ00467  1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKVHMN 58
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 5-45 1.71e-05

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 37.29  E-value: 1.71e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 857338648  5 HGSLARAGKVKSQTPKVEKQEKpKQPKGRAYKRLLYVRRFV 45
Cdd:COG4919   4 HGSLTKAGKVRSQTPKIPAKPR-KNPPPRVRNRREYRKRFV 43
PRK09336 PRK09336
30S ribosomal protein S30e; Provisional
 5-48 2.51e-04

30S ribosomal protein S30e; Provisional


Pssm-ID: 181786  Cd Length: 50  Bit Score: 34.38  E-value: 2.51e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 857338648  5 HGSLARAGKVKSQTPKVEKQEKPKQPKgRAYKRLLYVRRFVNVT 48
Cdd:PRK09336  4 HGSLTKAGKVRSQTPKIPPKPKKNEVP-RVRNRREYERRVLKAR 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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