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Conserved domains on  [gi|93140495|sp|P0C1A3|]
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RecName: Full=Pectate lyase A; Flags: Precursor

Protein Classification

polysaccharide lyase( domain architecture ID 10455512)

polysaccharide lyase family protein similar to pectate lyase, which catalyzes the eliminative cleavage of pectate to yield oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at the non-reducing ends in the soft rotting and maceration of plant tissue

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
 85-318 3.37e-95

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


:

Pssm-ID: 366158  Cd Length: 211  Bit Score: 283.33  E-value: 3.37e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    85 AKIIQITGTVDISGGTPYKDFADQKARSQINIPANTTVIG-IGTDAKFIN-GSLIIDGTdgtNNVIIRNVYIQTPidvep 162
Cdd:pfam00544   1 PKVITYTGNEDISGGAAYANFCDQKARSQIGVPSNTTIIGiIGTNGKFTNfGSLIIKGS---SNVIVRNLYIGTP----- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495   163 hyekgDGWNAEWDGMNITNGAHhVWVDHVTISDGSFTDDMYTTKdgetYVQHDGALDIKRGSDYVTISNSLFDQHDKTML 242
Cdd:pfam00544  73 -----DGWNKDWDAIRIDNSPN-VWVDHVTISDGSFTDDGYTTK----YVQHDGALDIKKGSDYVTISYSLFHGHKKTGL 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 93140495   243 IGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFngdvkdpVYRYLYSFGIGTSGSVLSEGNSF 318
Cdd:pfam00544 143 IGHSDDNNSQDTGKLRVTYHHNVYNRVTERAPLVRYGSIHAYNNVY-------VNIYLYSFGVGQNGSVLSESNSF 211
 
Name Accession Description Interval E-value
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
 85-318 3.37e-95

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 283.33  E-value: 3.37e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    85 AKIIQITGTVDISGGTPYKDFADQKARSQINIPANTTVIG-IGTDAKFIN-GSLIIDGTdgtNNVIIRNVYIQTPidvep 162
Cdd:pfam00544   1 PKVITYTGNEDISGGAAYANFCDQKARSQIGVPSNTTIIGiIGTNGKFTNfGSLIIKGS---SNVIVRNLYIGTP----- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495   163 hyekgDGWNAEWDGMNITNGAHhVWVDHVTISDGSFTDDMYTTKdgetYVQHDGALDIKRGSDYVTISNSLFDQHDKTML 242
Cdd:pfam00544  73 -----DGWNKDWDAIRIDNSPN-VWVDHVTISDGSFTDDGYTTK----YVQHDGALDIKKGSDYVTISYSLFHGHKKTGL 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 93140495   243 IGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFngdvkdpVYRYLYSFGIGTSGSVLSEGNSF 318
Cdd:pfam00544 143 IGHSDDNNSQDTGKLRVTYHHNVYNRVTERAPLVRYGSIHAYNNVY-------VNIYLYSFGVGQNGSVLSESNSF 211
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
11-392 2.25e-80

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 249.52  E-value: 2.25e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495  11 RTSTCLLATLIAGVMTSGVSAAELVNSKALESAPAaGWASQNGSTTGGAAATsdnIYVVTNISEFTSALSAGAvAKIIQI 90
Cdd:COG3866   2 KLLLVLLLALAASAATAGAATAVPDAAAAAAPAPE-GFASVNGGTTGGAGGT---VVTVTTLADLRAALEASG-PRIIVV 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495  91 TGTVDISggtpykdfadqkaRSQINIPANTTVIGIGTDAKFINGSLIIDGTdgtNNVIIRNVYIQTPidvephyekGDGW 170
Cdd:COG3866  77 SGTIDLS-------------KSPLKVNSNKTIAGQGDGATITGGGLNIKGA---SNVIIRNLRFRNG---------DDGG 131

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495 171 NAEWDGMNItNGAHHVWVDHVTISDGsftddmyttkdgetyvqHDGALDIKRGSDYVTISNSLFDQ----HDKTMLIGHS 246
Cdd:COG3866 132 GSGGDAIGI-EGAHNVWIDHCTFSWG-----------------YDGLLDIKRGSDNVTVSWNIFAEgkgdHGKGMLIGSS 193

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495 247 DTNSAqdkGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFNGDVKDpvyrylYSFGIGTSGSVLSEGNSFTIANlsas 326
Cdd:COG3866 194 DSDTT---GKLRVTFHHNLFANNDSRNPRVRFGQVHVYNNYFYNWGNN------YGIGSGGGAQVLVENNYFENVK---- 260

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 93140495 327 kacKVVKKFNGSIFSDNGSVL---------NGSAADLSGCGFSaytsaIPYVYAVQPmTTELAQSITDHAGSGKL 392
Cdd:COG3866 261 ---GPLATSDGSSLLDPGYLYargnvfdnsTGTAPAGSGTVFT-----PPYSYTLDP-ASDVKTLVLAGAGAGKL 326
Amb_all smart00656
Amb_all domain;
109-322 3.83e-57

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 185.17  E-value: 3.83e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    109 KARSQINIPANTTVIGIGTDAKFINGSLIIDGTdgtNNVIIRNVYIQTPidvephyekGDGWNAEWDGMNItNGAHHVWV 188
Cdd:smart00656   7 DNAGTIIINSNKTIDGRGSKVEIKGGGLTIKSV---SNVIIRNLTIHDP---------KPVYGSDGDAISI-DGSSNVWI 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    189 DHVTISDGsftddmytTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDkgKLHVTLFNNVFNR 268
Cdd:smart00656  74 DHVSLSGC--------TVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG--KMRVTIAHNYFGN 143

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 93140495    269 VTERAPRVRYGSIHSFNNVFNGDVKdpvyrylYSFGIGTSGSVLSEGNSFTIAN 322
Cdd:smart00656 144 LRQRAPRVRFGYVHVYNNYYTGWTS-------YAIGGRMGATILSEGNYFEAPI 190
 
Name Accession Description Interval E-value
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
 85-318 3.37e-95

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 283.33  E-value: 3.37e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    85 AKIIQITGTVDISGGTPYKDFADQKARSQINIPANTTVIG-IGTDAKFIN-GSLIIDGTdgtNNVIIRNVYIQTPidvep 162
Cdd:pfam00544   1 PKVITYTGNEDISGGAAYANFCDQKARSQIGVPSNTTIIGiIGTNGKFTNfGSLIIKGS---SNVIVRNLYIGTP----- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495   163 hyekgDGWNAEWDGMNITNGAHhVWVDHVTISDGSFTDDMYTTKdgetYVQHDGALDIKRGSDYVTISNSLFDQHDKTML 242
Cdd:pfam00544  73 -----DGWNKDWDAIRIDNSPN-VWVDHVTISDGSFTDDGYTTK----YVQHDGALDIKKGSDYVTISYSLFHGHKKTGL 142

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 93140495   243 IGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFngdvkdpVYRYLYSFGIGTSGSVLSEGNSF 318
Cdd:pfam00544 143 IGHSDDNNSQDTGKLRVTYHHNVYNRVTERAPLVRYGSIHAYNNVY-------VNIYLYSFGVGQNGSVLSESNSF 211
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
11-392 2.25e-80

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 249.52  E-value: 2.25e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495  11 RTSTCLLATLIAGVMTSGVSAAELVNSKALESAPAaGWASQNGSTTGGAAATsdnIYVVTNISEFTSALSAGAvAKIIQI 90
Cdd:COG3866   2 KLLLVLLLALAASAATAGAATAVPDAAAAAAPAPE-GFASVNGGTTGGAGGT---VVTVTTLADLRAALEASG-PRIIVV 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495  91 TGTVDISggtpykdfadqkaRSQINIPANTTVIGIGTDAKFINGSLIIDGTdgtNNVIIRNVYIQTPidvephyekGDGW 170
Cdd:COG3866  77 SGTIDLS-------------KSPLKVNSNKTIAGQGDGATITGGGLNIKGA---SNVIIRNLRFRNG---------DDGG 131

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495 171 NAEWDGMNItNGAHHVWVDHVTISDGsftddmyttkdgetyvqHDGALDIKRGSDYVTISNSLFDQ----HDKTMLIGHS 246
Cdd:COG3866 132 GSGGDAIGI-EGAHNVWIDHCTFSWG-----------------YDGLLDIKRGSDNVTVSWNIFAEgkgdHGKGMLIGSS 193

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495 247 DTNSAqdkGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFNGDVKDpvyrylYSFGIGTSGSVLSEGNSFTIANlsas 326
Cdd:COG3866 194 DSDTT---GKLRVTFHHNLFANNDSRNPRVRFGQVHVYNNYFYNWGNN------YGIGSGGGAQVLVENNYFENVK---- 260

                       330       340       350       360       370       380       390
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 93140495 327 kacKVVKKFNGSIFSDNGSVL---------NGSAADLSGCGFSaytsaIPYVYAVQPmTTELAQSITDHAGSGKL 392
Cdd:COG3866 261 ---GPLATSDGSSLLDPGYLYargnvfdnsTGTAPAGSGTVFT-----PPYSYTLDP-ASDVKTLVLAGAGAGKL 326
Amb_all smart00656
Amb_all domain;
109-322 3.83e-57

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 185.17  E-value: 3.83e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    109 KARSQINIPANTTVIGIGTDAKFINGSLIIDGTdgtNNVIIRNVYIQTPidvephyekGDGWNAEWDGMNItNGAHHVWV 188
Cdd:smart00656   7 DNAGTIIINSNKTIDGRGSKVEIKGGGLTIKSV---SNVIIRNLTIHDP---------KPVYGSDGDAISI-DGSSNVWI 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 93140495    189 DHVTISDGsftddmytTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDkgKLHVTLFNNVFNR 268
Cdd:smart00656  74 DHVSLSGC--------TVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG--KMRVTIAHNYFGN 143

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 93140495    269 VTERAPRVRYGSIHSFNNVFNGDVKdpvyrylYSFGIGTSGSVLSEGNSFTIAN 322
Cdd:smart00656 144 LRQRAPRVRFGYVHVYNNYYTGWTS-------YAIGGRMGATILSEGNYFEAPI 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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