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Conserved domains on  [gi|1230202941|gb|OYG87816|]
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protein bdm [Shigella sonnei]

Protein Classification

similar to protein bdm homolog( domain architecture ID 10013802)

protein similar to protein bdm homolog

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11436 PRK11436
biofilm-dependent modulation protein; Provisional
 1-71 3.15e-46

biofilm-dependent modulation protein; Provisional


:

Pssm-ID: 183135  Cd Length: 71  Bit Score: 141.31  E-value: 3.15e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230202941  1 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
Cdd:PRK11436   1 MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
 
Name Accession Description Interval E-value
PRK11436 PRK11436
biofilm-dependent modulation protein; Provisional
 1-71 3.15e-46

biofilm-dependent modulation protein; Provisional


Pssm-ID: 183135  Cd Length: 71  Bit Score: 141.31  E-value: 3.15e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230202941  1 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
Cdd:PRK11436   1 MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
BDM pfam10684
Putative biofilm-dependent modulation protein; This is a family of tightly conserved proteins ...
 1-71 4.73e-41

Putative biofilm-dependent modulation protein; This is a family of tightly conserved proteins from Enterobacteriaceae which are annotated as being biofilm-dependent modulation protein homologs.


Pssm-ID: 313818  Cd Length: 71  Bit Score: 128.32  E-value: 4.73e-41
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230202941  1 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
Cdd:pfam10684  1 MFTYHQAENSAAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
 
Name Accession Description Interval E-value
PRK11436 PRK11436
biofilm-dependent modulation protein; Provisional
 1-71 3.15e-46

biofilm-dependent modulation protein; Provisional


Pssm-ID: 183135  Cd Length: 71  Bit Score: 141.31  E-value: 3.15e-46
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230202941  1 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
Cdd:PRK11436   1 MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
BDM pfam10684
Putative biofilm-dependent modulation protein; This is a family of tightly conserved proteins ...
 1-71 4.73e-41

Putative biofilm-dependent modulation protein; This is a family of tightly conserved proteins from Enterobacteriaceae which are annotated as being biofilm-dependent modulation protein homologs.


Pssm-ID: 313818  Cd Length: 71  Bit Score: 128.32  E-value: 4.73e-41
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230202941  1 MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
Cdd:pfam10684  1 MFTYHQAENSAAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTINYVVSGQHPTL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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