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Conserved domains on  [gi|1230191831|gb|OYG77269|]
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IS6 family transposase, partial [Shigella boydii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rve super family cl43839
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
1-47 3.32e-22

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3316:

Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 83.80  E-value: 3.32e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1230191831   1 MNPFKGRYFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI 47
Cdd:COG3316     1 MVDFKGRRFPPEIILLAVRLYLRYGLSLRDVEEMLAERGVDVSHSTI 47
 
Name Accession Description Interval E-value
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
1-47 3.32e-22

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 83.80  E-value: 3.32e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1230191831   1 MNPFKGRYFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI 47
Cdd:COG3316     1 MVDFKGRRFPPEIILLAVRLYLRYGLSLRDVEEMLAERGVDVSHSTI 47
transpos_IS6 NF033587
IS6 family transposase;
4-47 3.43e-21

IS6 family transposase;


Pssm-ID: 411209 [Multi-domain]  Cd Length: 203  Bit Score: 80.70  E-value: 3.43e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1230191831   4 FKGRYFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI 47
Cdd:NF033587    1 FKRERFPPEIILLAVRLYLRGPLSLRDVEEILAERGVSVSHSTI 44
 
Name Accession Description Interval E-value
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
1-47 3.32e-22

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 83.80  E-value: 3.32e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1230191831   1 MNPFKGRYFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI 47
Cdd:COG3316     1 MVDFKGRRFPPEIILLAVRLYLRYGLSLRDVEEMLAERGVDVSHSTI 47
transpos_IS6 NF033587
IS6 family transposase;
4-47 3.43e-21

IS6 family transposase;


Pssm-ID: 411209 [Multi-domain]  Cd Length: 203  Bit Score: 80.70  E-value: 3.43e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1230191831   4 FKGRYFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTI 47
Cdd:NF033587    1 FKRERFPPEIILLAVRLYLRGPLSLRDVEEILAERGVSVSHSTI 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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