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Conserved domains on  [gi|1230098646|gb|OYF88452|]
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LexA family transcriptional regulator [Klebsiella quasipneumoniae subsp. similipneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YebG super family cl01217
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 1-92 1.03e-35

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


The actual alignment was detected with superfamily member PRK10061:

Pssm-ID: 470117  Cd Length: 96  Bit Score: 117.54  E-value: 1.03e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230098646   1 MAVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRAGRLPEQ 80
Cdd:PRK10061    1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                          90
                  ....*....|..
gi 1230098646  81 DATAHDAPAPST 92
Cdd:PRK10061   81 QVVGAESEEEDA 92
 
Name Accession Description Interval E-value
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-92 1.03e-35

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 117.54  E-value: 1.03e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230098646   1 MAVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRAGRLPEQ 80
Cdd:PRK10061    1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                          90
                  ....*....|..
gi 1230098646  81 DATAHDAPAPST 92
Cdd:PRK10061   81 QVVGAESEEEDA 92
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-89 2.23e-35

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 116.60  E-value: 2.23e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230098646   2 AVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRAGRLPEQD 81
Cdd:COG3141     1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80


                  ....*...
gi 1230098646  82 ATAHDAPA 89
Cdd:COG3141    81 AEKEAEAA 88
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-74 4.11e-32

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 107.66  E-value: 4.11e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1230098646   3 VEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRA 74
Cdd:pfam07130   1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALKG 72
 
Name Accession Description Interval E-value
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-92 1.03e-35

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 117.54  E-value: 1.03e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230098646   1 MAVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRAGRLPEQ 80
Cdd:PRK10061    1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                          90
                  ....*....|..
gi 1230098646  81 DATAHDAPAPST 92
Cdd:PRK10061   81 QVVGAESEEEDA 92
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-89 2.23e-35

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 116.60  E-value: 2.23e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230098646   2 AVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRAGRLPEQD 81
Cdd:COG3141     1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80


                  ....*...
gi 1230098646  82 ATAHDAPA 89
Cdd:COG3141    81 AEKEAEAA 88
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-74 4.11e-32

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 107.66  E-value: 4.11e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1230098646   3 VEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDAQRDTMAMWLAERKEALQHILRA 74
Cdd:pfam07130   1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALKG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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