metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Enteritidis str. SHSE004]
rRNA maturation RNAse YbeY( domain architecture ID 10001064)
rRNA maturation RNAse YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of 16S rRNA
List of domain hits
Name | Accession | Description | Interval | E-value | |||
YbeY | COG0319 | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and ... |
20-148 | 3.24e-63 | |||
ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme is part of the Pathway/BioSystem: 16S rRNA modification : Pssm-ID: 440088 Cd Length: 144 Bit Score: 190.37 E-value: 3.24e-63
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Name | Accession | Description | Interval | E-value | |||
YbeY | COG0319 | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and ... |
20-148 | 3.24e-63 | |||
ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440088 Cd Length: 144 Bit Score: 190.37 E-value: 3.24e-63
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PRK13963 | PRK13963 | rRNA maturation RNase YbeY; |
6-150 | 6.13e-56 | |||
rRNA maturation RNase YbeY; Pssm-ID: 237573 Cd Length: 258 Bit Score: 176.12 E-value: 6.13e-56
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YbeY | pfam02130 | Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in ... |
21-144 | 1.37e-47 | |||
Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly maturated 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs. The crystal structure of the protein from Aquifex aeolicus showed an overall fold consisting of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Pssm-ID: 460455 Cd Length: 125 Bit Score: 150.31 E-value: 1.37e-47
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TIGR00043 | TIGR00043 | rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member ... |
39-145 | 5.00e-45 | |||
rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other] Pssm-ID: 272871 [Multi-domain] Cd Length: 110 Bit Score: 143.17 E-value: 5.00e-45
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Name | Accession | Description | Interval | E-value | |||
YbeY | COG0319 | ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and ... |
20-148 | 3.24e-63 | |||
ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440088 Cd Length: 144 Bit Score: 190.37 E-value: 3.24e-63
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PRK13963 | PRK13963 | rRNA maturation RNase YbeY; |
6-150 | 6.13e-56 | |||
rRNA maturation RNase YbeY; Pssm-ID: 237573 Cd Length: 258 Bit Score: 176.12 E-value: 6.13e-56
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YbeY | pfam02130 | Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in ... |
21-144 | 1.37e-47 | |||
Endoribonuclease YbeY; YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly maturated 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs. The crystal structure of the protein from Aquifex aeolicus showed an overall fold consisting of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Pssm-ID: 460455 Cd Length: 125 Bit Score: 150.31 E-value: 1.37e-47
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TIGR00043 | TIGR00043 | rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member ... |
39-145 | 5.00e-45 | |||
rRNA maturation RNase YbeY; This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other] Pssm-ID: 272871 [Multi-domain] Cd Length: 110 Bit Score: 143.17 E-value: 5.00e-45
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PLN02887 | PLN02887 | hydrolase family protein |
37-147 | 8.44e-13 | |||
hydrolase family protein Pssm-ID: 215479 [Multi-domain] Cd Length: 580 Bit Score: 64.90 E-value: 8.44e-13
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Blast search parameters | ||||
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