|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
264-606 |
1.59e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 451.53 E-value: 1.59e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:COG3829 140 IIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRS-RPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLL 422
Cdd:COG3829 220 AKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 423 YRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGELmD 502
Cdd:COG3829 300 YRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVI-T 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 503 LVHLAEAgeplrscgigltaegkldgLSEKSQTAATSTTQEvgiepelanlqaflsgrervLGTSLKEIEQRLVQLALER 582
Cdd:COG3829 379 PEHLPEY-------------------LLEEAEAASAAEEGS--------------------LKEALEEVEKELIEEALEK 419
|
330 340
....*....|....*....|....
gi 1207804165 583 SGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:COG3829 420 TGGNKSKAAKALGISRSTLYRKLK 443
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
247-599 |
7.11e-115 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 352.17 E-value: 7.11e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 247 DEETRMAELPEPA-DDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALP 325
Cdd:PRK05022 171 LPQDVAEFLRQEAlKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 326 ETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATN 405
Cdd:PRK05022 251 ESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 406 LDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQ 485
Cdd:PRK05022 331 RDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 486 NLIERGVIAAgdgelmdlvhLAEAGEPLrscgIGLTAEgKLDGLSEKSQTAATSTTqevgiepeLANLQAFLSGRERVlg 565
Cdd:PRK05022 411 HVISRAALLA----------RARGAGRI----VTLEAQ-HLDLPAEVALPPPEAAA--------APAAVVSQNLREAT-- 465
|
330 340 350
....*....|....*....|....*....|....*
gi 1207804165 566 tslkEIEQR-LVQLALERSGGNLTAAAQMLGMSRA 599
Cdd:PRK05022 466 ----EAFQRqLIRQALAQHQGNWAAAARALELDRA 496
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
248-606 |
2.12e-110 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 341.31 E-value: 2.12e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 248 EETRMAELPEPADDRA-----MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCA 322
Cdd:TIGR01817 177 SKQLRDKAPEIARRRSgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 323 ALPETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIA 402
Cdd:TIGR01817 257 ALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 403 ATNLDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRkPLGFSTRLVNALLTYRFPGNIR 482
Cdd:TIGR01817 337 ATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKWPGNVR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 483 ELQNLIERGVIAAGDGeLMDLVHLAEAGEPLRSCGIGLTAegkldglseksQTAATSTTQEVGIEPELANLQAFLSGRER 562
Cdd:TIGR01817 416 ELENCLERTATLSRSG-TITRSDFSCQSGQCLSPMLAKTC-----------PHGHISIDPLAGTTPPHSPASAALPGEPG 483
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1207804165 563 VLGTSLKEiEQRLVQlALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:TIGR01817 484 LSGPTLSE-RERLIA-ALEQAGWVQAKAARLLGMTPRQVGYALR 525
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
264-431 |
2.67e-103 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 309.72 E-value: 2.67e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLY 423
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1207804165 424 RLNVFPIH 431
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
47-146 |
1.41e-40 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 142.66 E-value: 1.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 47 LAETVAFAPQDGNIWLCGQRMMLLQGAAFGAIRRELVEALGLDKARGLLTRIGWQAGARDAAQVSAHWPEGDHASLYSAG 126
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 1207804165 127 PRLHMLEGMVNVEVVRFDID 146
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
283-434 |
2.23e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 99.53 E-value: 2.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 283 PTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVErgaftgADRSRPGRFERARGGTLFL 362
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207804165 363 DEIATLSLSAQSKILRVLQEGEIERvggttPIPVDVRVIAATNLDlrrevEAGRFREDLLYRLNVfPIHLPP 434
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRP-----LLGDLDRALYDRLDI-RIVIPL 151
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
159-219 |
2.33e-22 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 90.42 E-value: 2.33e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207804165 159 HNSLEADEHIAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKP 219
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
68-221 |
2.47e-22 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 93.22 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 68 MLLQGAAFGAIRRELVEALGLDKARgLLTRIGWQAGARDAAQVSahwpegDHASLYSAGPRLHMLEGMVNVEVVRFDIds 147
Cdd:COG1719 1 MAAEEDFLVALFRALEEELGIAAAR-VLYRAGKRIGKELAERFK------EEADLLEALKEFWKLSGWGILEIDELSE-- 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207804165 148 svGHFysEFFWHNSLEAdehiAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKPAE 221
Cdd:COG1719 72 --GPL--VITVEDSPEC----RGLPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
158-219 |
1.24e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 68.47 E-value: 1.24e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207804165 158 WHNSLEADEHIAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKP 219
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
287-425 |
6.18e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 6.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 287 TVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEA---ELFGVERGAFTGADRSRpGRFERARG---GTL 360
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALARKlkpDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207804165 361 FLDEIATLSLSAQSKILRVLQEgeiERVGGTTPIPVDVRVIAATNL--DLRREVEAGRFREDLLYRL 425
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
264-606 |
1.59e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 451.53 E-value: 1.59e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:COG3829 140 IIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRS-RPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLL 422
Cdd:COG3829 220 AKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 423 YRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGELmD 502
Cdd:COG3829 300 YRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVI-T 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 503 LVHLAEAgeplrscgigltaegkldgLSEKSQTAATSTTQEvgiepelanlqaflsgrervLGTSLKEIEQRLVQLALER 582
Cdd:COG3829 379 PEHLPEY-------------------LLEEAEAASAAEEGS--------------------LKEALEEVEKELIEEALEK 419
|
330 340
....*....|....*....|....
gi 1207804165 583 SGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:COG3829 420 TGGNKSKAAKALGISRSTLYRKLK 443
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
257-606 |
8.87e-133 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 394.72 E-value: 8.87e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 257 EPADDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGV 336
Cdd:COG2204 126 ENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGH 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 337 ERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGR 416
Cdd:COG2204 206 EKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 417 FREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLgFSTRLVNALLTYRFPGNIRELQNLIERGVIAAg 496
Cdd:COG2204 286 FREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAVILA- 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 497 DGELMDLVHLAEAgeplrscgigltaegkldglseksqtaatsttqevgiepelanlqaflsgrervlgtsLKEIEQRLV 576
Cdd:COG2204 364 DGEVITAEDLPEA----------------------------------------------------------LEEVERELI 385
|
330 340 350
....*....|....*....|....*....|
gi 1207804165 577 QLALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:COG2204 386 ERALEETGGNVSRAAELLGISRRTLYRKLK 415
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
247-599 |
7.11e-115 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 352.17 E-value: 7.11e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 247 DEETRMAELPEPA-DDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALP 325
Cdd:PRK05022 171 LPQDVAEFLRQEAlKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 326 ETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATN 405
Cdd:PRK05022 251 ESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 406 LDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQ 485
Cdd:PRK05022 331 RDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 486 NLIERGVIAAgdgelmdlvhLAEAGEPLrscgIGLTAEgKLDGLSEKSQTAATSTTqevgiepeLANLQAFLSGRERVlg 565
Cdd:PRK05022 411 HVISRAALLA----------RARGAGRI----VTLEAQ-HLDLPAEVALPPPEAAA--------APAAVVSQNLREAT-- 465
|
330 340 350
....*....|....*....|....*....|....*
gi 1207804165 566 tslkEIEQR-LVQLALERSGGNLTAAAQMLGMSRA 599
Cdd:PRK05022 466 ----EAFQRqLIRQALAQHQGNWAAAARALELDRA 496
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
195-604 |
1.32e-110 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 344.96 E-value: 1.32e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 195 GRLVVFREQECRCMGHSACRIVGKPAEQWDDIDLD---------LAHLDALDFLSRSTYG---------SDEETRMAELP 256
Cdd:COG3284 236 GRIVAANRAARRLLGLADAALLGRPLEELFGLDLEalpdgarraPASPRPLRLRDGRRLGallrlrparRAARAAPAGAP 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 257 EPADDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGV 336
Cdd:COG3284 316 APAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGY 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 337 ERGAFTGADRS-RPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAG 415
Cdd:COG3284 396 EPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAG 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 416 RFREDLLYRLNVFPIHLPPLRErREDIPLLMSYFLRKFSARHGrkPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAA 495
Cdd:COG3284 476 RFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLRELAAGRG--PLRLSPEALALLAAYPWPGNVRELRNVLRTALALA 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 496 GDGELmDLVHLaeagePlrscgigltaegkldglseksqtaatsttqevgiePELANLQAFLSGRERVLGTSLKEIEQRL 575
Cdd:COG3284 553 DGGVI-TVEDL-----P-----------------------------------DELRAELAAAAPAAAAPLTSLEEAERDA 591
|
410 420
....*....|....*....|....*....
gi 1207804165 576 VQLALERSGGNLTAAAQMLGMSRAQIsYR 604
Cdd:COG3284 592 ILRALRACGGNVSAAARALGISRSTL-YR 619
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
248-606 |
2.12e-110 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 341.31 E-value: 2.12e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 248 EETRMAELPEPADDRA-----MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCA 322
Cdd:TIGR01817 177 SKQLRDKAPEIARRRSgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 323 ALPETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIA 402
Cdd:TIGR01817 257 ALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 403 ATNLDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRkPLGFSTRLVNALLTYRFPGNIR 482
Cdd:TIGR01817 337 ATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR-PLTITPSAIRVLMSCKWPGNVR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 483 ELQNLIERGVIAAGDGeLMDLVHLAEAGEPLRSCGIGLTAegkldglseksQTAATSTTQEVGIEPELANLQAFLSGRER 562
Cdd:TIGR01817 416 ELENCLERTATLSRSG-TITRSDFSCQSGQCLSPMLAKTC-----------PHGHISIDPLAGTTPPHSPASAALPGEPG 483
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1207804165 563 VLGTSLKEiEQRLVQlALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:TIGR01817 484 LSGPTLSE-RERLIA-ALEQAGWVQAKAARLLGMTPRQVGYALR 525
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
264-431 |
2.67e-103 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 309.72 E-value: 2.67e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLY 423
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 1207804165 424 RLNVFPIH 431
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
265-606 |
3.77e-101 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 310.38 E-value: 3.77e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 265 VGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTGA 344
Cdd:TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 345 DRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLYR 424
Cdd:TIGR02974 82 QKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 425 LNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKP-LGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGD-GELMD 502
Cdd:TIGR02974 162 LAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLeEAPID 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 503 LVHLAEAGEPLRsCGIGLTAEgkldglSEKSQTAATSTTQEVGIEPELANLQAFlsgrervlgtsLKEIEQRLVQLALER 582
Cdd:TIGR02974 242 EIIIDPFASPWR-PKQAAPAV------DEVNSTPTDLPSPSSIAAAFPLDLKQA-----------QQDYEIELLQQALAE 303
|
330 340
....*....|....*....|....
gi 1207804165 583 SGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:TIGR02974 304 AQFNQRKAAELLGLTYHQLRGLLR 327
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
276-606 |
7.26e-101 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 314.09 E-value: 7.26e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 276 QQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTGADRSRPGRFERA 355
Cdd:PRK11361 157 KDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 356 RGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLYRLNVFPIHLPPL 435
Cdd:PRK11361 237 NEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 436 RERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAagdgelmdlvhlaeageplrS 515
Cdd:PRK11361 317 RDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM--------------------N 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 516 CGIGLTAEGKLDGLSEKSQTAATSTTQEVGiepelanlqaflsgrERVLGTSLKEIEQRLVQLALERSGGNLTAAAQMLG 595
Cdd:PRK11361 377 SGPIIFSEDLPPQIRQPVCNAGEVKTAPVG---------------ERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLG 441
|
330
....*....|.
gi 1207804165 596 MSRAQISYRLK 606
Cdd:PRK11361 442 ISRRALMYKLQ 452
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
253-605 |
1.79e-97 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 305.03 E-value: 1.79e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 253 AELPEPADDR-AMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEA 331
Cdd:PRK10365 129 AETPAVTASQfGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 332 ELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRRE 411
Cdd:PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 412 VEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERG 491
Cdd:PRK10365 289 VNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERA 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 492 VIaagdgeLMDLVHLAEAGEPLRSCGIGLTAEGKLDglseksqtaatsttqevgIEPelanlqaflsgrervlgtsLKEI 571
Cdd:PRK10365 369 VV------LLTGEYISERELPLAIASTPIPLGQSQD------------------IQP-------------------LVEV 405
|
330 340 350
....*....|....*....|....*....|....
gi 1207804165 572 EQRLVQLALERSGGNLTAAAQMLGMSRAQISYRL 605
Cdd:PRK10365 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
253-606 |
4.78e-96 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 302.04 E-value: 4.78e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 253 AELPEPADDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAE 332
Cdd:TIGR01818 125 ADAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 333 LFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREV 412
Cdd:TIGR01818 205 LFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 413 EAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIER-G 491
Cdd:TIGR01818 285 RQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWlT 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 492 VIAAGDGELMDLV--HLAEAGEPLRScgiglTAEGKLDGLSEKSQTAATsttqevgiepelanlQAFLSGRERVLGTSLK 569
Cdd:TIGR01818 365 VMASGDEVLVSDLpaELALTGRPASA-----PDSDGQDSWDEALEAWAK---------------QALSRGEQGLLDRALP 424
|
330 340 350
....*....|....*....|....*....|....*..
gi 1207804165 570 EIEQRLVQLALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:TIGR01818 425 EFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLK 461
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
248-598 |
7.39e-95 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 298.20 E-value: 7.39e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 248 EETRMAELPEPADDRAMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPET 327
Cdd:TIGR02915 125 ENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 328 LLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLD 407
Cdd:TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 408 LRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNL 487
Cdd:TIGR02915 285 LKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENK 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 488 IERGVIAAgdgelmdlvhlaeAGEPLRSCGIGLTAegkldglSEKSQTAATSTTQEVgiepelanlqaflsgRERVlgts 567
Cdd:TIGR02915 365 VKRAVIMA-------------EGNQITAEDLGLDA-------RERAETPLEVNLREV---------------RERA---- 405
|
330 340 350
....*....|....*....|....*....|.
gi 1207804165 568 lkeiEQRLVQLALERSGGNLTAAAQMLGMSR 598
Cdd:TIGR02915 406 ----EREAVRKAIARVDGNIARAAELLGITR 432
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
263-608 |
3.20e-84 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 273.52 E-value: 3.20e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 263 AMVGISAAF--VAASQQLYrvAPTQATVLLTGESGVGKELFARSLHQASP--------RAGTPLVALNCAALPETLLEAE 332
Cdd:PRK15424 220 DLLGQSPQMeqVRQTILLY--ARSSAAVLIQGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAE 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 333 LFGVERGAFTGADRS-RPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRRE 411
Cdd:PRK15424 298 LFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 412 VEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRK-FSARHGRKPLGFSTRLV---NALLTYRFPGNIRELQNL 487
Cdd:PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQsLAALSAPFSAALRQGLQqceTLLLHYDWPGNVRELRNL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 488 IERGVIaagdgelmdlvHLAEAGEPlrscgiGLTAEGKLDGLSEKSQTAATSTTQEVgiepelanlqaflsgrervlgts 567
Cdd:PRK15424 458 MERLAL-----------FLSVEPTP------DLTPQFLQLLLPELARESAKTPAPRL----------------------- 497
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1207804165 568 lkeiEQRLVQLALERSGGNLTAAAQMLGMSRAQISYRLKGE 608
Cdd:PRK15424 498 ----LAATLQQALERFNGDKTAAANYLGISRTTLWRRLKAE 534
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
263-506 |
5.92e-84 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 271.68 E-value: 5.92e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 263 AMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFT 342
Cdd:COG3283 205 HIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAFG 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 343 GADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLL 422
Cdd:COG3283 285 NAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 423 YRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAgDGELMD 502
Cdd:COG3283 365 YRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLL-EGDELT 443
|
....
gi 1207804165 503 LVHL 506
Cdd:COG3283 444 PEDL 447
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
264-606 |
7.80e-84 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 265.38 E-value: 7.80e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLY 423
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 424 RLNVFPIHLPPLRERREDIPLLMSYFLRKFsARHGRKPL--GFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGElm 501
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEHFAIQM-CRELGLPLfpGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSE-- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 502 dlvhlaeagEPLRSCGIGLTAegkldglseKSQTAATSTTQEVGIEPELA-NLQAFLSgrervlgtslkEIEQRLVQLAL 580
Cdd:PRK11608 245 ---------YPLDNIIIDPFK---------RRPAEEAIAVSETTSLPTLPlDLREWQH-----------QQEKELLQRSL 295
|
330 340
....*....|....*....|....*.
gi 1207804165 581 ERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:PRK11608 296 QQAKFNQKRAAELLGLTYHQLRALLK 321
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
270-606 |
6.76e-83 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 263.63 E-value: 6.76e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 270 AFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAelfgvergaftgadrsrp 349
Cdd:COG3604 100 AFSEEDLRLLETLASLAAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------ 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 350 grferarggtlfldeiatlslsaqskilrvLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLYRLNVFP 429
Cdd:COG3604 162 ------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFP 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 430 IHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGELmDLVHLAEA 509
Cdd:COG3604 212 IRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVL-DADDLAPG 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 510 GEPlrscgigltaegkldglseksqtaatsttqevgiepelanlqaflsgrervlgtSLKEIEQRLVQLALERSGGNLTA 589
Cdd:COG3604 291 SRE------------------------------------------------------ALEEVEREHILEALERTGGNIAG 316
|
330
....*....|....*..
gi 1207804165 590 AAQMLGMSRAQISYRLK 606
Cdd:COG3604 317 AARLLGLTPSTLRSRMK 333
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
225-606 |
4.75e-82 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 265.58 E-value: 4.75e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 225 DIDldlahlDALDFLSR--STYGSDEETRMAELPEPADDraMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFA 302
Cdd:PRK10923 107 DID------EAVALVERaiSHYQEQQQPRNIQVNGPTTD--IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 303 RSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQE 382
Cdd:PRK10923 179 HALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLAD 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 383 GEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPL 462
Cdd:PRK10923 259 GQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 463 GFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGELM--DLvhlaeageplrscgigltaEGKLDGLSEKSQTAATST 540
Cdd:PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLiqDL-------------------PGELFESTVPESTSQMQP 399
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207804165 541 TQEVGIEPELANlQAFLSGRERVLGTSLKEIEQRLVQLALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:PRK10923 400 DSWATLLAQWAD-RALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
263-606 |
2.82e-79 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 260.18 E-value: 2.82e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 263 AMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFT 342
Cdd:TIGR02329 213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFT 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 343 GADRS-RPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDL 421
Cdd:TIGR02329 293 GARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 422 LYRLNVFPIHLPPLRERREDI-PLLMSYFLRKFSARhgRKPLGFSTRLV-----NALLTYRFPGNIRELQNLIERgvIAa 495
Cdd:TIGR02329 373 FYRLSILRIALPPLRERPGDIlPLAAEYLVQAAAAL--RLPDSEAAAQVlagvaDPLQRYPWPGNVRELRNLVER--LA- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 496 gdgelmdlVHLAEAGEPLRSCGIGLTAEGKLDGLSEKSQTAATSTTQEVGIEPElanlqaflsgrervlgtslkeieqrL 575
Cdd:TIGR02329 448 --------LELSAMPAGALTPDVLRALAPELAEASGKGKTSALSLRERSRVEAL-------------------------A 494
|
330 340 350
....*....|....*....|....*....|.
gi 1207804165 576 VQLALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:TIGR02329 495 VRAALERFGGDRDAAAKALGISRTTLWRRLK 525
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
264-493 |
4.17e-76 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 255.91 E-value: 4.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 264 MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTG 343
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 344 ADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLY 423
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 424 RLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIERGVI 493
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVL 607
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
254-492 |
1.43e-75 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 247.83 E-value: 1.43e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 254 ELPEPADDRAMvgiSAAFVAASQQLYR-------VAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPE 326
Cdd:PRK15115 122 EQSAPATDERW---REAIVTRSPLMLRlleqarmVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 327 TLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNL 406
Cdd:PRK15115 199 QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 407 DLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHgrKPL--GFSTRLVNALLTYRFPGNIREL 484
Cdd:PRK15115 279 DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH--KPFvrAFSTDAMKRLMTASWPGNVRQL 356
|
....*...
gi 1207804165 485 QNLIERGV 492
Cdd:PRK15115 357 VNVIEQCV 364
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
260-490 |
4.30e-62 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 214.17 E-value: 4.30e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 260 DDRA---MVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGV 336
Cdd:PRK10820 199 DDSAfsqIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGH 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 337 ERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGR 416
Cdd:PRK10820 279 APGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGE 358
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207804165 417 FREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKPLGFSTRLVNALLTYRFPGNIRELQNLIER 490
Cdd:PRK10820 359 FREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYR 432
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
263-606 |
1.58e-61 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 215.31 E-value: 1.58e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 263 AMVGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGverGAFT 342
Cdd:PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRT 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 343 GADRSRPGRFERARGGTLFLDEIATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLL 422
Cdd:PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 423 YRLNVFPIHLPPLRERREDIPLLMSYFLRKFSARHGRKpLGFSTRLVNALLTYRFPGNIRELQNLIERGVIAAGDGELmd 502
Cdd:PRK11388 483 YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRI-- 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 503 lvhlaeageplrscgigltaegKLDGLSE--KSQTAAtsttQEVGIEPELANLqaflsgrervlgtSLKEIEQRLVQLAL 580
Cdd:PRK11388 560 ----------------------RLSDLPEhlFTEQAT----DDVSATRLSTSL-------------SLAELEKEAIINAA 600
|
330 340
....*....|....*....|....*.
gi 1207804165 581 ERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:PRK11388 601 QVCGGRIQEMAALLGIGRTTLWRKMK 626
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
226-484 |
1.63e-42 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 160.77 E-value: 1.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 226 IDLDLAHLDALdflsrstygsdeETRMAElpEPADDRAMV--GI---SAAFVAASQQLYRVA-PTQATVLLTGESGVGKE 299
Cdd:COG4650 157 IDLDLSRYDAI------------ASRFAQ--EQQEAVSFLksGIatrNAAFNRLIEQIERVAiRSRAPILLTGPTGAGKS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 300 LFAR---SLHQASPRAGTPLVALNCAALPETLLEAELFGVERGAFTGADRSRPGRFERARGGTLFLDEIATLSLSAQSKI 376
Cdd:COG4650 223 QLARriyELKKARHQVSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAML 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 377 LRVLQEGEIERVGGTTPIPVDVRVIAATNLDLRREVEAGRFREDLLYRLNVFPIHLPPLRERREDIPLLMSYFLRKFSAR 456
Cdd:COG4650 303 LRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIEPNLDYELARFARE 382
|
250 260 270
....*....|....*....|....*....|....
gi 1207804165 457 HGRKPlGFSTRLVNALLTY------RFPGNIREL 484
Cdd:COG4650 383 QGRRV-RFNKEARARYLAFatspeaLWSGNFRDL 415
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
47-146 |
1.41e-40 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 142.66 E-value: 1.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 47 LAETVAFAPQDGNIWLCGQRMMLLQGAAFGAIRRELVEALGLDKARGLLTRIGWQAGARDAAQVSAHWPEGDHASLYSAG 126
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 1207804165 127 PRLHMLEGMVNVEVVRFDID 146
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
288-488 |
4.87e-35 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 141.40 E-value: 4.87e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 288 VLLTGESGVGKELFARSLHQASPRAGT-----PLVALNCAAL---PEtLLEAELFGVERGAFTGADRSRPGRFERARGGT 359
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEYAIEIGVlpedaPFVVFNCADYannPQ-LLMSQLFGYVKGAFTGADKDKEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 360 LFLDEIATLSLSAQSKILRVLQEGEIERVGGT-TPIPVDVRVIAAT--NLD-------LRReveagrfredllyrlnvFP 429
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATteDPEssllktfLRR-----------------IP 274
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207804165 430 --IHLPPLRER----REDiplLMSYFLRKFSARHGrKPLGFSTRLVNALLTYRFPGNIRELQNLI 488
Cdd:COG1221 275 mvIKLPSLEERsleeRLE---LIKHFFKEEAKRLN-KPIKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
283-434 |
2.23e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 99.53 E-value: 2.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 283 PTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEAELFGVErgaftgADRSRPGRFERARGGTLFL 362
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVRLLFELAEKAKPGVLFI 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207804165 363 DEIATLSLSAQSKILRVLQEGEIERvggttPIPVDVRVIAATNLDlrrevEAGRFREDLLYRLNVfPIHLPP 434
Cdd:cd00009 91 DEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRP-----LLGDLDRALYDRLDI-RIVIPL 151
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
159-219 |
2.33e-22 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 90.42 E-value: 2.33e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1207804165 159 HNSLEADEHIAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKP 219
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
68-221 |
2.47e-22 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 93.22 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 68 MLLQGAAFGAIRRELVEALGLDKARgLLTRIGWQAGARDAAQVSahwpegDHASLYSAGPRLHMLEGMVNVEVVRFDIds 147
Cdd:COG1719 1 MAAEEDFLVALFRALEEELGIAAAR-VLYRAGKRIGKELAERFK------EEADLLEALKEFWKLSGWGILEIDELSE-- 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207804165 148 svGHFysEFFWHNSLEAdehiAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKPAE 221
Cdd:COG1719 72 --GPL--VITVEDSPEC----RGLPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
265-435 |
2.90e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 87.01 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 265 VGISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLeaelfgvergaftga 344
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELL--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 345 drsrpgrfERARGGTLFLDEIATLSLSAQSKILRVLQEGEiervggttpiPVDVRVIAATNLDLRREVEAGRFREDLLYR 424
Cdd:pfam14532 66 --------EQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 1207804165 425 LNVFPIHLPPL 435
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
158-219 |
1.24e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 68.47 E-value: 1.24e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207804165 158 WHNSLEADEHIAAYGLGSEPGCWMEVGYASGYASSLLGRLVVFREQECRCMGHSACRIVGKP 219
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
287-425 |
6.18e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 6.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 287 TVLLTGESGVGKELFARSLHQASPRAGTPLVALNCAALPETLLEA---ELFGVERGAFTGADRSRpGRFERARG---GTL 360
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALARKlkpDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207804165 361 FLDEIATLSLSAQSKILRVLQEgeiERVGGTTPIPVDVRVIAATNL--DLRREVEAGRFREDLLYRL 425
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
568-606 |
6.29e-10 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 54.71 E-value: 6.29e-10
10 20 30
....*....|....*....|....*....|....*....
gi 1207804165 568 LKEIEQRLVQLALERSGGNLTAAAQMLGMSRAQISYRLK 606
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLK 39
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
288-413 |
1.76e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 50.37 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 288 VLLTGESGVGKELFARSLHQASPRAGTPLVALNcAALPetllEAELFGvERGAFTGADRSRPGRFERA--RGGTLFLDEI 365
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSNRPVFYVQLT-RDTT----EEDLFG-RRNIDPGGASWVDGPLVRAarEGEIAVLDEI 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1207804165 366 ATLSLSAQSKILRVLQEGEIERVGGTTPIPV---DVRVIAATNlDLRREVE 413
Cdd:pfam07728 76 NRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN-PLDRGLN 125
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
568-598 |
2.51e-06 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 45.57 E-value: 2.51e-06
10 20 30
....*....|....*....|....*....|.
gi 1207804165 568 LKEIEQRLVQLALERSGGNLTAAAQMLGMSR 598
Cdd:COG2901 40 LAEVEKPLLETVLEHTRGNQSRAAEMLGINR 70
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
288-405 |
1.69e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 38.73 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 288 VLLTGESGVGKELFARSLHQAsprAGTPLVALNCaalpetlleAELFGVERGAftGADRSRpGRFERARGGT---LFLDE 364
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKE---LGAPFIEISG---------SELVSKYVGE--SEKRLR-ELFEAAKKLApcvIFIDE 65
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1207804165 365 I---ATLSLSAQSKILRVLQEGEIERVGGTTPIPVDVRVIAATN 405
Cdd:pfam00004 66 IdalAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIVIAATN 109
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
288-453 |
2.80e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 39.87 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 288 VLLTGESGVGKELFARSLhqASpRAGTPLVALNCAALPETLL---EAELFGVergaftgadrsrpgrFERAR--GGTLFL 362
Cdd:COG1223 38 ILFYGPPGTGKTMLAEAL--AG-ELKLPLLTVRLDSLIGSYLgetARNLRKL---------------FDFARraPCVIFF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 363 DEIATLSLSAQSKILRvlqeGEIERV-----GGTTPIPVDVRVIAATN----LD--LRReveagRFREdllyrlnVFPIH 431
Cdd:COG1223 100 DEFDAIAKDRGDQNDV----GEVKRVvnallQELDGLPSGSVVIAATNhpelLDsaLWR-----RFDE-------VIEFP 163
|
170 180
....*....|....*....|..
gi 1207804165 432 LPPLRERREdiplLMSYFLRKF 453
Cdd:COG1223 164 LPDKEERKE----ILELNLKKF 181
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
267-419 |
9.17e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 37.26 E-value: 9.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 267 ISAAFVAASQQLYRVAPTQATVLLTGESGVGKELFARSLhqASpRAGTPLVALNCAALPETLLEAELFGVERgAFTGADR 346
Cdd:cd19481 8 AVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKAL--AG-ELGLPLIVVKLSSLLSKYVGESEKNLRK-IFERARR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207804165 347 SRPgrferargGTLFLDEIATL-----SLSAQSKILRVLQE--GEIERVGGTTPIPvdvrVIAATN----LD--LRReve 413
Cdd:cd19481 84 LAP--------CILFIDEIDAIgrkrdSSGESGELRRVLNQllTELDGVNSRSKVL----VIAATNrpdlLDpaLLR--- 148
|
....*.
gi 1207804165 414 AGRFRE 419
Cdd:cd19481 149 PGRFDE 154
|
|
| |
