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Conserved domains on  [gi|1182996605|gb|ORV17855|]
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1,4-beta-glucanase [Mycobacteroides chelonae]

Protein Classification

glycoside hydrolase family 6 protein( domain architecture ID 10474417)

glycoside hydrolase family 6 protein similar to Humicola insolens endoglucanase-6B that cuts internal beta-1,4-glucosidic bonds, and to Podospora anserina exoglucanase CEL6B that cuts the non-reducing end beta-1,4-glucosidic linkages in cellulose and cellotetraose to release cellobiose

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
44-281 1.05e-70

Glycosyl hydrolases family 6;


:

Pssm-ID: 426212  Cd Length: 293  Bit Score: 220.57  E-value: 1.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605  44 AIANTPQAYWMDNVS-TPSVD---AKYISAAQASGATPVLALYAIPHRDCGSFA-AGGFGSADA----YRGWIDGVASAV 114
Cdd:pfam01341  10 KVADVPTFVWLDTIAaIPGLEdalADARAAAKAGGRTPVLVVYNLPDRDCAALAsNGELSSADAglarYKEYIDPIAAII 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 115 GSGP---AVIILEPDALA-------MADCLSPGQRqeRFELMRYAVDTLTRNPATALYVDGGHSRWVS----ADVMAARL 180
Cdd:pfam01341  90 GDYSdlrAVVVIEPDSLAnlvtnlsVPKCANAASA--YEEGIAYALKQLNAPPNVYVYLDAGHAGWLGwdanLGPAAELL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 181 NDV-----GVGKARGFSLNTANFFTTDE--------------EIGYGDAISGM-----TNGAHYVIDTSRNGAGPTADAL 236
Cdd:pfam01341 168 AKVykaagGPASVRGFATNVSNYNPTDEptspsytqwnpnfdEKHYGEALSPLlvaagFPAHIFIIDTSRNGNQGTRPEW 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1182996605 237 -YWCNPSGRALGTAPTTATASPNVDAYLWVKRPGESDGSCDRGDPR 281
Cdd:pfam01341 248 gDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
 
Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
44-281 1.05e-70

Glycosyl hydrolases family 6;


Pssm-ID: 426212  Cd Length: 293  Bit Score: 220.57  E-value: 1.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605  44 AIANTPQAYWMDNVS-TPSVD---AKYISAAQASGATPVLALYAIPHRDCGSFA-AGGFGSADA----YRGWIDGVASAV 114
Cdd:pfam01341  10 KVADVPTFVWLDTIAaIPGLEdalADARAAAKAGGRTPVLVVYNLPDRDCAALAsNGELSSADAglarYKEYIDPIAAII 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 115 GSGP---AVIILEPDALA-------MADCLSPGQRqeRFELMRYAVDTLTRNPATALYVDGGHSRWVS----ADVMAARL 180
Cdd:pfam01341  90 GDYSdlrAVVVIEPDSLAnlvtnlsVPKCANAASA--YEEGIAYALKQLNAPPNVYVYLDAGHAGWLGwdanLGPAAELL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 181 NDV-----GVGKARGFSLNTANFFTTDE--------------EIGYGDAISGM-----TNGAHYVIDTSRNGAGPTADAL 236
Cdd:pfam01341 168 AKVykaagGPASVRGFATNVSNYNPTDEptspsytqwnpnfdEKHYGEALSPLlvaagFPAHIFIIDTSRNGNQGTRPEW 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1182996605 237 -YWCNPSGRALGTAPTTATASPNVDAYLWVKRPGESDGSCDRGDPR 281
Cdd:pfam01341 248 gDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
 
Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
44-281 1.05e-70

Glycosyl hydrolases family 6;


Pssm-ID: 426212  Cd Length: 293  Bit Score: 220.57  E-value: 1.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605  44 AIANTPQAYWMDNVS-TPSVD---AKYISAAQASGATPVLALYAIPHRDCGSFA-AGGFGSADA----YRGWIDGVASAV 114
Cdd:pfam01341  10 KVADVPTFVWLDTIAaIPGLEdalADARAAAKAGGRTPVLVVYNLPDRDCAALAsNGELSSADAglarYKEYIDPIAAII 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 115 GSGP---AVIILEPDALA-------MADCLSPGQRqeRFELMRYAVDTLTRNPATALYVDGGHSRWVS----ADVMAARL 180
Cdd:pfam01341  90 GDYSdlrAVVVIEPDSLAnlvtnlsVPKCANAASA--YEEGIAYALKQLNAPPNVYVYLDAGHAGWLGwdanLGPAAELL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1182996605 181 NDV-----GVGKARGFSLNTANFFTTDE--------------EIGYGDAISGM-----TNGAHYVIDTSRNGAGPTADAL 236
Cdd:pfam01341 168 AKVykaagGPASVRGFATNVSNYNPTDEptspsytqwnpnfdEKHYGEALSPLlvaagFPAHIFIIDTSRNGNQGTRPEW 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1182996605 237 -YWCNPSGRALGTAPTTATASPNVDAYLWVKRPGESDGSCDRGDPR 281
Cdd:pfam01341 248 gDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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