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Conserved domains on  [gi|1181681573|gb|ORM90193|]
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hypothetical protein HA50_27005 [Pantoea cypripedii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6750 pfam20535
Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. ...
 7-134 2.27e-45

Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. This family of proteins is found in proteobacteria. Proteins in this family are approximately 130 amino acids in length.


:

Pssm-ID: 466684  Cd Length: 129  Bit Score: 143.68  E-value: 2.27e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181681573   7 LMARLYAVVFSVQLSMMSLRERAIRSLLTLITVLLPGIAFAEGDVADIIDSGAAGARRVKSSGMDYFQMIGLFVAGASL- 85
Cdd:pfam20535   1 FEARLLAVKVHLSLAAMSLRQKLAAGLLALLALVLPLPASADGDIAGMVNSVAQGAKSVQSSLLTIAQFIGIGCVLAGLf 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1181681573  86 LALKKVGSHPQVTLGRCLTGIGIGALMFVIPELIGRVQKQAGMSSVTIS 134
Cdd:pfam20535  81 LWLKKKGDRPQVKTGRIVTSIGIGCLLIAIPEFISRGQKQAGLSPVDIG 129
 
Name Accession Description Interval E-value
DUF6750 pfam20535
Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. ...
 7-134 2.27e-45

Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. This family of proteins is found in proteobacteria. Proteins in this family are approximately 130 amino acids in length.


Pssm-ID: 466684  Cd Length: 129  Bit Score: 143.68  E-value: 2.27e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181681573   7 LMARLYAVVFSVQLSMMSLRERAIRSLLTLITVLLPGIAFAEGDVADIIDSGAAGARRVKSSGMDYFQMIGLFVAGASL- 85
Cdd:pfam20535   1 FEARLLAVKVHLSLAAMSLRQKLAAGLLALLALVLPLPASADGDIAGMVNSVAQGAKSVQSSLLTIAQFIGIGCVLAGLf 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1181681573  86 LALKKVGSHPQVTLGRCLTGIGIGALMFVIPELIGRVQKQAGMSSVTIS 134
Cdd:pfam20535  81 LWLKKKGDRPQVKTGRIVTSIGIGCLLIAIPEFISRGQKQAGLSPVDIG 129
 
Name Accession Description Interval E-value
DUF6750 pfam20535
Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. ...
 7-134 2.27e-45

Family of unknown function (DUF6750); This family of proteins is functionally uncharacterized. This family of proteins is found in proteobacteria. Proteins in this family are approximately 130 amino acids in length.


Pssm-ID: 466684  Cd Length: 129  Bit Score: 143.68  E-value: 2.27e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181681573   7 LMARLYAVVFSVQLSMMSLRERAIRSLLTLITVLLPGIAFAEGDVADIIDSGAAGARRVKSSGMDYFQMIGLFVAGASL- 85
Cdd:pfam20535   1 FEARLLAVKVHLSLAAMSLRQKLAAGLLALLALVLPLPASADGDIAGMVNSVAQGAKSVQSSLLTIAQFIGIGCVLAGLf 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1181681573  86 LALKKVGSHPQVTLGRCLTGIGIGALMFVIPELIGRVQKQAGMSSVTIS 134
Cdd:pfam20535  81 LWLKKKGDRPQVKTGRIVTSIGIGCLLIAIPEFISRGQKQAGLSPVDIG 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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