|
Name |
Accession |
Description |
Interval |
E-value |
| Importin_rep_4 |
pfam18808 |
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
278-367 |
8.29e-44 |
|
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry includes a single repeat unit.
:
Pssm-ID: 408579 Cd Length: 90 Bit Score: 153.39 E-value: 8.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 278 NKNLMDATRQVALEVLITLAEAAPGLCRKQSHFCEKLVPVILDMMTEIQDDEDWYAVDSLDEDDEEDNSVFGEQAIDRLA 357
Cdd:pfam18808 1 NKDLDDAARQVALELLVTLAEAAPGMCRKQPQFTNALVPICLSMMTEVDDAEDWYTSDDLDDDDNEDNYVFGEQALDRLA 80
|
90
....*....|
gi 1132414585 358 CSLGGKQMLP 367
Cdd:pfam18808 81 CRLGGKALLP 90
|
|
| Importin_rep_6 |
pfam18829 |
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
782-892 |
2.38e-29 |
|
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry represents two consecutive repeat units and includes sequences captured by pfam18808.
:
Pssm-ID: 465881 Cd Length: 110 Bit Score: 112.97 E-value: 2.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 782 FVSQLFSSFADSVEVAGEGCLNNVQLQEFISVVNRILNLNLKQIEERQIQFNSGEgVDEEEARIIGEDEIAESEAMDSIS 861
Cdd:pfam18829 1 VLAEYYSSLAECIEVLGPNCLSDEQMEEFIKAINSNLTEYFERVKEREEERKDDD-YDEEVEEDLEEEEETDEELLSEIN 79
|
90 100 110
....*....|....*....|....*....|.
gi 1132414585 862 KALRLVLKTNTSSFIGLFDQLIPTLVMFADP 892
Cdd:pfam18829 80 KAIHAIFKTHKTAFLPYFEQLLPTVVAFLND 110
|
|
| KAP95 super family |
cl27231 |
Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
14-638 |
3.26e-18 |
|
Karyopherin (importin) beta [Intracellular trafficking and secretion];
The actual alignment was detected with superfamily member COG5215:
Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 90.38 E-value: 3.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 14 ILQNlmeNLLSPNNEIRTQAEKTLNTEWS--IAQPKSLLIglSLIMNESPDPNIRGFASVLLRRVSLKEDfnSNGNQDYp 91
Cdd:COG5215 9 LGKN---HVLSPDPNARLRAEAQLLELQSgdFEQFISLLV--QVLCDLNSNDQLRMVAGLILKNSLHAND--PELQKGC- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 92 dTSVWVRVNDESRNQVKSLLLSALnretdSGSRNKICDT----ISDIANYD---DKWPELLGTLF--ICASSEIPSHRES 162
Cdd:COG5215 81 -SQRWLGMRHESKEQVKGMALRAL-----KSPEPRFCTMaaqlLAAIARMElpnSLWPGLMEEMVrnVGDEQPVSGKCES 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 163 AYRIFYGC----PQLLADQNPQSVRDAFIGAFQD-PVNNVRLAALKAAVQVLMISQDKYRSKFDsmVPHMLSVLEPLVSL 237
Cdd:COG5215 155 LGICGYHCeseaPEDLIQMSNVILFAIVMGALKNeTTSAVRLAALKALMDSLMFVQGNFCYEEE--RNYFMQVVCEATQG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 238 NDEQSLVECLSALSELAEVYPKAFRPILVNMLdLGALIGGNKNLMDATRQVALEVLITLAEA----------APGLCRKQ 307
Cdd:COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENAL-AALTGRFMKSQNDEVAIQAVEFWSTICEEeidgemedkyLPEVPAQN 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 308 SHFC----EKLVPVILDMMT---EIQDDEDWyavdsldeddeedNSVFGEQAIDRLACSLGGKQMLPVAFQHIPTMLSSQ 380
Cdd:COG5215 312 HGFAraavADVLPELLSLLEkqgEDYYGDDW-------------NPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 381 EWQRRHAALMAISAIGEGSFKIMKNE--------LENILNIVC------------------PYIRDP------------- 421
Cdd:COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKivpqalpgIENEMSDSClwvksttawcfgaiadhvAMIISPcghlvlevsasli 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 422 ----HPRIRYAACNAIGQISTDFSPTVQE------KFHSIVLQSLIPAMDDV---SNPRVQAHAA-AAMVNFCEEA---- 483
Cdd:COG5215 459 glmdCPFRSINCSWRKENLVDHIAKAVREvesflaKFYLAILNALVKGTELAlneSNLRVSLFSAlGTLILICPDAvsdi 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 484 ------------------------------------------------RKKTIEPYLDTLFERLMKLL-TSDKRYVQEQA 514
Cdd:COG5215 539 lagfydytskkldecisvlgqilatedqllveelqsnyigvleaiirtRRRDIEDVEDQLMELFIRILeSTKPTTAFGDV 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 515 ITTIATVADSAQELFRKHYSAIVPQLLNVLenaSEKEYRLLrGKAIECASFIALAVGYDvFKTDAPKFIDLLVKTQSQVV 594
Cdd:COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRAL---NCTDRFVL-NSAVGLVGDLANTLGTD-FNIYADVLMSSLVQCLSSEA 693
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1132414585 595 EDDD--PQIsylLAAWARLCKVMGQDFIPYLPVVMPPLLKSASLQP 638
Cdd:COG5215 694 THRDlkPAI---LSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Importin_rep_4 |
pfam18808 |
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
278-367 |
8.29e-44 |
|
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry includes a single repeat unit.
Pssm-ID: 408579 Cd Length: 90 Bit Score: 153.39 E-value: 8.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 278 NKNLMDATRQVALEVLITLAEAAPGLCRKQSHFCEKLVPVILDMMTEIQDDEDWYAVDSLDEDDEEDNSVFGEQAIDRLA 357
Cdd:pfam18808 1 NKDLDDAARQVALELLVTLAEAAPGMCRKQPQFTNALVPICLSMMTEVDDAEDWYTSDDLDDDDNEDNYVFGEQALDRLA 80
|
90
....*....|
gi 1132414585 358 CSLGGKQMLP 367
Cdd:pfam18808 81 CRLGGKALLP 90
|
|
| Importin_rep_6 |
pfam18829 |
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
782-892 |
2.38e-29 |
|
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry represents two consecutive repeat units and includes sequences captured by pfam18808.
Pssm-ID: 465881 Cd Length: 110 Bit Score: 112.97 E-value: 2.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 782 FVSQLFSSFADSVEVAGEGCLNNVQLQEFISVVNRILNLNLKQIEERQIQFNSGEgVDEEEARIIGEDEIAESEAMDSIS 861
Cdd:pfam18829 1 VLAEYYSSLAECIEVLGPNCLSDEQMEEFIKAINSNLTEYFERVKEREEERKDDD-YDEEVEEDLEEEEETDEELLSEIN 79
|
90 100 110
....*....|....*....|....*....|.
gi 1132414585 862 KALRLVLKTNTSSFIGLFDQLIPTLVMFADP 892
Cdd:pfam18829 80 KAIHAIFKTHKTAFLPYFEQLLPTVVAFLND 110
|
|
| KAP95 |
COG5215 |
Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
14-638 |
3.26e-18 |
|
Karyopherin (importin) beta [Intracellular trafficking and secretion];
Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 90.38 E-value: 3.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 14 ILQNlmeNLLSPNNEIRTQAEKTLNTEWS--IAQPKSLLIglSLIMNESPDPNIRGFASVLLRRVSLKEDfnSNGNQDYp 91
Cdd:COG5215 9 LGKN---HVLSPDPNARLRAEAQLLELQSgdFEQFISLLV--QVLCDLNSNDQLRMVAGLILKNSLHAND--PELQKGC- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 92 dTSVWVRVNDESRNQVKSLLLSALnretdSGSRNKICDT----ISDIANYD---DKWPELLGTLF--ICASSEIPSHRES 162
Cdd:COG5215 81 -SQRWLGMRHESKEQVKGMALRAL-----KSPEPRFCTMaaqlLAAIARMElpnSLWPGLMEEMVrnVGDEQPVSGKCES 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 163 AYRIFYGC----PQLLADQNPQSVRDAFIGAFQD-PVNNVRLAALKAAVQVLMISQDKYRSKFDsmVPHMLSVLEPLVSL 237
Cdd:COG5215 155 LGICGYHCeseaPEDLIQMSNVILFAIVMGALKNeTTSAVRLAALKALMDSLMFVQGNFCYEEE--RNYFMQVVCEATQG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 238 NDEQSLVECLSALSELAEVYPKAFRPILVNMLdLGALIGGNKNLMDATRQVALEVLITLAEA----------APGLCRKQ 307
Cdd:COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENAL-AALTGRFMKSQNDEVAIQAVEFWSTICEEeidgemedkyLPEVPAQN 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 308 SHFC----EKLVPVILDMMT---EIQDDEDWyavdsldeddeedNSVFGEQAIDRLACSLGGKQMLPVAFQHIPTMLSSQ 380
Cdd:COG5215 312 HGFAraavADVLPELLSLLEkqgEDYYGDDW-------------NPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 381 EWQRRHAALMAISAIGEGSFKIMKNE--------LENILNIVC------------------PYIRDP------------- 421
Cdd:COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKivpqalpgIENEMSDSClwvksttawcfgaiadhvAMIISPcghlvlevsasli 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 422 ----HPRIRYAACNAIGQISTDFSPTVQE------KFHSIVLQSLIPAMDDV---SNPRVQAHAA-AAMVNFCEEA---- 483
Cdd:COG5215 459 glmdCPFRSINCSWRKENLVDHIAKAVREvesflaKFYLAILNALVKGTELAlneSNLRVSLFSAlGTLILICPDAvsdi 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 484 ------------------------------------------------RKKTIEPYLDTLFERLMKLL-TSDKRYVQEQA 514
Cdd:COG5215 539 lagfydytskkldecisvlgqilatedqllveelqsnyigvleaiirtRRRDIEDVEDQLMELFIRILeSTKPTTAFGDV 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 515 ITTIATVADSAQELFRKHYSAIVPQLLNVLenaSEKEYRLLrGKAIECASFIALAVGYDvFKTDAPKFIDLLVKTQSQVV 594
Cdd:COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRAL---NCTDRFVL-NSAVGLVGDLANTLGTD-FNIYADVLMSSLVQCLSSEA 693
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1132414585 595 EDDD--PQIsylLAAWARLCKVMGQDFIPYLPVVMPPLLKSASLQP 638
Cdd:COG5215 694 THRDlkPAI---LSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
382-436 |
6.72e-08 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 50.06 E-value: 6.72e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1132414585 382 WQRRHAALMAISAIGEGSFKIMKNELENILNIVCPYIRDPHPRIRYAACNAIGQI 436
Cdd:pfam13513 1 WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Importin_rep_4 |
pfam18808 |
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
278-367 |
8.29e-44 |
|
Importin repeat; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry includes a single repeat unit.
Pssm-ID: 408579 Cd Length: 90 Bit Score: 153.39 E-value: 8.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 278 NKNLMDATRQVALEVLITLAEAAPGLCRKQSHFCEKLVPVILDMMTEIQDDEDWYAVDSLDEDDEEDNSVFGEQAIDRLA 357
Cdd:pfam18808 1 NKDLDDAARQVALELLVTLAEAAPGMCRKQPQFTNALVPICLSMMTEVDDAEDWYTSDDLDDDDNEDNYVFGEQALDRLA 80
|
90
....*....|
gi 1132414585 358 CSLGGKQMLP 367
Cdd:pfam18808 81 CRLGGKALLP 90
|
|
| Importin_rep_6 |
pfam18829 |
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem ... |
782-892 |
2.38e-29 |
|
Importin repeat 6; The importin subunit beta-3 has a superhelical structure composed of tandem repeats structurally similar to HEAT repeats. This Pfam entry represents two consecutive repeat units and includes sequences captured by pfam18808.
Pssm-ID: 465881 Cd Length: 110 Bit Score: 112.97 E-value: 2.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 782 FVSQLFSSFADSVEVAGEGCLNNVQLQEFISVVNRILNLNLKQIEERQIQFNSGEgVDEEEARIIGEDEIAESEAMDSIS 861
Cdd:pfam18829 1 VLAEYYSSLAECIEVLGPNCLSDEQMEEFIKAINSNLTEYFERVKEREEERKDDD-YDEEVEEDLEEEEETDEELLSEIN 79
|
90 100 110
....*....|....*....|....*....|.
gi 1132414585 862 KALRLVLKTNTSSFIGLFDQLIPTLVMFADP 892
Cdd:pfam18829 80 KAIHAIFKTHKTAFLPYFEQLLPTVVAFLND 110
|
|
| KAP95 |
COG5215 |
Karyopherin (importin) beta [Intracellular trafficking and secretion]; |
14-638 |
3.26e-18 |
|
Karyopherin (importin) beta [Intracellular trafficking and secretion];
Pssm-ID: 227540 [Multi-domain] Cd Length: 858 Bit Score: 90.38 E-value: 3.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 14 ILQNlmeNLLSPNNEIRTQAEKTLNTEWS--IAQPKSLLIglSLIMNESPDPNIRGFASVLLRRVSLKEDfnSNGNQDYp 91
Cdd:COG5215 9 LGKN---HVLSPDPNARLRAEAQLLELQSgdFEQFISLLV--QVLCDLNSNDQLRMVAGLILKNSLHAND--PELQKGC- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 92 dTSVWVRVNDESRNQVKSLLLSALnretdSGSRNKICDT----ISDIANYD---DKWPELLGTLF--ICASSEIPSHRES 162
Cdd:COG5215 81 -SQRWLGMRHESKEQVKGMALRAL-----KSPEPRFCTMaaqlLAAIARMElpnSLWPGLMEEMVrnVGDEQPVSGKCES 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 163 AYRIFYGC----PQLLADQNPQSVRDAFIGAFQD-PVNNVRLAALKAAVQVLMISQDKYRSKFDsmVPHMLSVLEPLVSL 237
Cdd:COG5215 155 LGICGYHCeseaPEDLIQMSNVILFAIVMGALKNeTTSAVRLAALKALMDSLMFVQGNFCYEEE--RNYFMQVVCEATQG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 238 NDEQSLVECLSALSELAEVYPKAFRPILVNMLdLGALIGGNKNLMDATRQVALEVLITLAEA----------APGLCRKQ 307
Cdd:COG5215 233 NDEELQHAAFGCLNKIMMLYYKFMQSYMENAL-AALTGRFMKSQNDEVAIQAVEFWSTICEEeidgemedkyLPEVPAQN 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 308 SHFC----EKLVPVILDMMT---EIQDDEDWyavdsldeddeedNSVFGEQAIDRLACSLGGKQMLPVAFQHIPTMLSSQ 380
Cdd:COG5215 312 HGFAraavADVLPELLSLLEkqgEDYYGDDW-------------NPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 381 EWQRRHAALMAISAIGEGSFKIMKNE--------LENILNIVC------------------PYIRDP------------- 421
Cdd:COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKivpqalpgIENEMSDSClwvksttawcfgaiadhvAMIISPcghlvlevsasli 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 422 ----HPRIRYAACNAIGQISTDFSPTVQE------KFHSIVLQSLIPAMDDV---SNPRVQAHAA-AAMVNFCEEA---- 483
Cdd:COG5215 459 glmdCPFRSINCSWRKENLVDHIAKAVREvesflaKFYLAILNALVKGTELAlneSNLRVSLFSAlGTLILICPDAvsdi 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 484 ------------------------------------------------RKKTIEPYLDTLFERLMKLL-TSDKRYVQEQA 514
Cdd:COG5215 539 lagfydytskkldecisvlgqilatedqllveelqsnyigvleaiirtRRRDIEDVEDQLMELFIRILeSTKPTTAFGDV 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 515 ITTIATVADSAQELFRKHYSAIVPQLLNVLenaSEKEYRLLrGKAIECASFIALAVGYDvFKTDAPKFIDLLVKTQSQVV 594
Cdd:COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRAL---NCTDRFVL-NSAVGLVGDLANTLGTD-FNIYADVLMSSLVQCLSSEA 693
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1132414585 595 EDDD--PQIsylLAAWARLCKVMGQDFIPYLPVVMPPLLKSASLQP 638
Cdd:COG5215 694 THRDlkPAI---LSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
382-436 |
6.72e-08 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 50.06 E-value: 6.72e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1132414585 382 WQRRHAALMAISAIGEGSFKIMKNELENILNIVCPYIRDPHPRIRYAACNAIGQI 436
Cdd:pfam13513 1 WRVREAAALALGSLAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| HEAT_2 |
pfam13646 |
HEAT repeats; This family includes multiple HEAT repeats. |
373-476 |
1.65e-05 |
|
HEAT repeats; This family includes multiple HEAT repeats.
Pssm-ID: 433376 [Multi-domain] Cd Length: 88 Bit Score: 44.25 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 373 IPTMLSSQEWQRRHAALMAISAIGEgsfkimknelENILNIVCPYIRDPHPRIRYAACNAIGQISTdfsptvqekfhSIV 452
Cdd:pfam13646 5 LQALLRDPDPEVRAAAIRALGRIGD----------PEAVPALLELLKDEDPAVRRAAAEALGKIGD-----------PEA 63
|
90 100
....*....|....*....|....
gi 1132414585 453 LQSLIPAMDDVSNPRVQAHAAAAM 476
Cdd:pfam13646 64 LPALLELLRDDDDDVVRAAAAEAL 87
|
|
| HEAT |
COG1413 |
HEAT repeat [General function prediction only]; |
385-549 |
2.97e-05 |
|
HEAT repeat [General function prediction only];
Pssm-ID: 441023 [Multi-domain] Cd Length: 137 Bit Score: 45.00 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 385 RHAALMAISAIGEgsfkimknelENILNIVCPYIRDPHPRIRYAACNAIGQIStdfsptvqekfHSIVLQSLIPAMDDvS 464
Cdd:COG1413 2 RRAAARALGRLGD----------PAAVPALIAALADEDPDVRAAAARALGRLG-----------DPRAVPALLEALKD-P 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 465 NPRVQAHAAAAMVNF-CEEArkktiepyldtlFERLMKLLTSDKRYVQEQAITTIATVADsaqelfrkhySAIVPQLLNV 543
Cdd:COG1413 60 DPEVRAAAAEALGRIgDPEA------------VPALIAALKDEDPEVRRAAAEALGRLGD----------PAAVPALLEA 117
|
....*.
gi 1132414585 544 LENASE 549
Cdd:COG1413 118 LKDPDW 123
|
|
| HEAT_EZ |
pfam13513 |
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ... |
466-521 |
2.15e-04 |
|
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.
Pssm-ID: 463906 [Multi-domain] Cd Length: 55 Bit Score: 40.04 E-value: 2.15e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1132414585 466 PRVQAHAAAAMVNfCEEARKKTIEPYLDTLFERLMKLLTSDKRYVQEQAITTIATV 521
Cdd:pfam13513 1 WRVREAAALALGS-LAEGGPDLLAPAVPELLPALLPLLNDDSDLVREAAAWALGRL 55
|
|
| MMS19_C |
pfam12460 |
RNAPII transcription regulator C-terminal; MMS19 is required for both nucleotide excision ... |
447-562 |
1.22e-03 |
|
RNAPII transcription regulator C-terminal; MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription. This C-terminal domain, along with the N-terminal, MMS19_N, form part of a silencing complex in fission yeast that contains Dos2, Rik1, Mms19 and Cdc20 (the catalytic subunit of DNA polymerase-epsilon). This complex regulates RNA polymerase II (RNA Pol II) activity in heterochromatin and is required for DNA replication and heterochromatin assembly. This domain has a HEAT-like repeat structure.
Pssm-ID: 463594 Cd Length: 426 Bit Score: 42.63 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132414585 447 KFHSIVLQSLIPAMDDVSNPRVQAHAAAAMVNFCEEARKKTIEPYLDTLFERLMKLLTSDKRYVQEQAITTIATVADSAQ 526
Cdd:pfam12460 307 RFFNTVLPKLVEGFKSADDSSIKPNYLTALSLILKNVPKSLLLPELPTLLPLLLQALDLPDAEVRLSTLETLLSLLEEAP 386
|
90 100 110
....*....|....*....|....*....|....*.
gi 1132414585 527 ELFRKHYSAIVPQLLNVLENASEKEYRlLRGKAIEC 562
Cdd:pfam12460 387 QLVSEHLSSLVPRLLKLSTPSSMNSAK-VRIAALQC 421
|
|
| HEAT |
pfam02985 |
HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see ... |
410-437 |
1.74e-03 |
|
HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514).
Pssm-ID: 460773 Cd Length: 31 Bit Score: 36.74 E-value: 1.74e-03
10 20
....*....|....*....|....*...
gi 1132414585 410 ILNIVCPYIRDPHPRIRYAACNAIGQIS 437
Cdd:pfam02985 1 LLPLLLKLLNDPSPEVREAAAEALGELA 28
|
|
| |
