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Conserved domains on  [gi|1132110382|gb|OLY69464|]
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microcompartment protein EutL [Citrobacter braakii]

Protein Classification

ethanolamine utilization microcompartment protein EutL( domain architecture ID 11500387)

ethanolamine utilization microcompartment protein EutL may be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
microcomp_EutL TIGR04502
microcompartment protein EutL; Members of this family are EutL, a protein of bacterial ...
 5-218 1.72e-132

microcompartment protein EutL; Members of this family are EutL, a protein of bacterial microcompartments for ethanolamine utilization (eut). The most closely related protein in microcompartments for utilization of 1,2-propanediol (hence pdu) or glycerol is PduB (TIGR04501).


:

Pssm-ID: 275295 [Multi-domain]  Cd Length: 214  Bit Score: 370.86  E-value: 1.72e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   5 DLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGEV 84
Cdd:TIGR04502   1 DPIRANVLAVRIIPNVDPALAEKLNLKPHHRSLGLITADIDDVTYTALDEATKKADVDVVYAKSFYAGAAHASGPLSGEV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  85 LIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGIDA 164
Cdd:TIGR04502  81 IGILAGPSPAEVRSGLDAAIDFIENGAYFYSANEDGSIAYFAHTVSRTGSYLSKEAGIEEGEALAYLIAPPLEAMYGLDA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1132110382 165 ALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:TIGR04502 161 ALKAADVELVVFYGPPSETNFGGGLLTGSQSACKAACDAFAEAVLEVARNPLKY 214
 
Name Accession Description Interval E-value
microcomp_EutL TIGR04502
microcompartment protein EutL; Members of this family are EutL, a protein of bacterial ...
 5-218 1.72e-132

microcompartment protein EutL; Members of this family are EutL, a protein of bacterial microcompartments for ethanolamine utilization (eut). The most closely related protein in microcompartments for utilization of 1,2-propanediol (hence pdu) or glycerol is PduB (TIGR04501).


Pssm-ID: 275295 [Multi-domain]  Cd Length: 214  Bit Score: 370.86  E-value: 1.72e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   5 DLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGEV 84
Cdd:TIGR04502   1 DPIRANVLAVRIIPNVDPALAEKLNLKPHHRSLGLITADIDDVTYTALDEATKKADVDVVYAKSFYAGAAHASGPLSGEV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  85 LIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGIDA 164
Cdd:TIGR04502  81 IGILAGPSPAEVRSGLDAAIDFIENGAYFYSANEDGSIAYFAHTVSRTGSYLSKEAGIEEGEALAYLIAPPLEAMYGLDA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1132110382 165 ALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:TIGR04502 161 ALKAADVELVVFYGPPSETNFGGGLLTGSQSACKAACDAFAEAVLEVARNPLKY 214
PRK15405 PRK15405
ethanolamine utilization microcompartment protein EutL;
2-218 9.31e-131

ethanolamine utilization microcompartment protein EutL;


Pssm-ID: 185303 [Multi-domain]  Cd Length: 217  Bit Score: 366.71  E-value: 9.31e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   2 PALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTS 81
Cdd:PRK15405    1 MALDLIRPSVLAMRVIANVNAGLARELKLPPHIRSLGLITADSDDVTYTALDEATKQAMVEVVYARSFYAGAAHASTPLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  82 GEVLIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFG 161
Cdd:PRK15405   81 GEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTAFFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLEAMYG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1132110382 162 IDAALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:PRK15405  161 IDAALKAADVQLVTFVGPPSETNFGGALLTGSQSACKAACNAFTDAVLEVARNPIQY 217
EutL COG4816
Ethanolamine utilization protein EutL, microcompartment shell protein [Amino acid transport ...
 4-218 1.63e-109

Ethanolamine utilization protein EutL, microcompartment shell protein [Amino acid transport and metabolism];


Pssm-ID: 443844 [Multi-domain]  Cd Length: 216  Bit Score: 312.95  E-value: 1.63e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   4 LDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGE 83
Cdd:COG4816     2 LDPLKAKVLAEVVIANVDPDLAEKLGLDPKYRSIGIITADTDDVPYIAADEATKAANVEVVYARSFYGGAGHASGPLAGE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  84 VLIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGID 163
Cdd:COG4816    82 VIGILAGPDPAEVRSGLEAALDFLENTAGFVSANDDGHIEFYAHYISRTGSYLSKAAGIPEGEAFAYLIAPPLEAVYGLD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1132110382 164 AALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:COG4816   162 AALKAADVEVVVFYGPPSETNFSGELLTGSQSACRAACDAFREAVLKVAENPKSY 216
BMC_EutL_repeat1 cd07049
ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1; ...
 11-113 1.02e-53

ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1; EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).


Pssm-ID: 132889  Cd Length: 103  Bit Score: 167.59  E-value: 1.02e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  11 VTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGEVLIMLGG 90
Cdd:cd07049     1 VLAVKVIPNVDPDLAKELSLPPHHRSLGIITADSDDVTYTALDEATKAAEVEVVYARSFYAGAAHASTPLAGEVIGILAG 80

                          90       100
                  ....*....|....*....|...
gi 1132110382  91 PNPAEVRAGLDAMVANIESGAAF 113
Cdd:cd07049    81 PSPAEVRSGLNAAIDFIENEAYF 103
BMC smart00877
Bacterial microcompartments are primitive organelles composed entirely of protein subunits; ...
 150-211 1.85e-05

Bacterial microcompartments are primitive organelles composed entirely of protein subunits; The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.


Pssm-ID: 197945  Cd Length: 75  Bit Score: 41.40  E-value: 1.85e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1132110382  150 YLVAPPLEATFGIDAALKSADVQLVTYVPPPSetNYSAAFMTGSQAACKAACNAFADAVLDI 211
Cdd:smart00877   5 IETRGAAAAIEAADAALKAANVELVGYESIGG--GKVTVIITGDVAAVRAAVEAGLEAAERL 64
BMC pfam00936
BMC domain; Bacterial microcompartments are primitive organelles composed entirely of protein ...
 36-102 3.24e-05

BMC domain; Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.


Pssm-ID: 425954 [Multi-domain]  Cd Length: 74  Bit Score: 40.90  E-value: 3.24e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1132110382  36 SLGLITADSDDVAYIAADEATKQAMVEVVYGRslyagaahspSPTSGEVLIMLGGpNPAEVRAGLDA 102
Cdd:pfam00936   1 ALGLIETRGLAAGIEAADAMLKAANVELVGYE----------LIGGGKVTVIITG-DVAAVKAAVEA 56
 
Name Accession Description Interval E-value
microcomp_EutL TIGR04502
microcompartment protein EutL; Members of this family are EutL, a protein of bacterial ...
 5-218 1.72e-132

microcompartment protein EutL; Members of this family are EutL, a protein of bacterial microcompartments for ethanolamine utilization (eut). The most closely related protein in microcompartments for utilization of 1,2-propanediol (hence pdu) or glycerol is PduB (TIGR04501).


Pssm-ID: 275295 [Multi-domain]  Cd Length: 214  Bit Score: 370.86  E-value: 1.72e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   5 DLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGEV 84
Cdd:TIGR04502   1 DPIRANVLAVRIIPNVDPALAEKLNLKPHHRSLGLITADIDDVTYTALDEATKKADVDVVYAKSFYAGAAHASGPLSGEV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  85 LIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGIDA 164
Cdd:TIGR04502  81 IGILAGPSPAEVRSGLDAAIDFIENGAYFYSANEDGSIAYFAHTVSRTGSYLSKEAGIEEGEALAYLIAPPLEAMYGLDA 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1132110382 165 ALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:TIGR04502 161 ALKAADVELVVFYGPPSETNFGGGLLTGSQSACKAACDAFAEAVLEVARNPLKY 214
PRK15405 PRK15405
ethanolamine utilization microcompartment protein EutL;
2-218 9.31e-131

ethanolamine utilization microcompartment protein EutL;


Pssm-ID: 185303 [Multi-domain]  Cd Length: 217  Bit Score: 366.71  E-value: 9.31e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   2 PALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTS 81
Cdd:PRK15405    1 MALDLIRPSVLAMRVIANVNAGLARELKLPPHIRSLGLITADSDDVTYTALDEATKQAMVEVVYARSFYAGAAHASTPLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  82 GEVLIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFG 161
Cdd:PRK15405   81 GEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTAFFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLEAMYG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1132110382 162 IDAALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:PRK15405  161 IDAALKAADVQLVTFVGPPSETNFGGALLTGSQSACKAACNAFTDAVLEVARNPIQY 217
EutL COG4816
Ethanolamine utilization protein EutL, microcompartment shell protein [Amino acid transport ...
 4-218 1.63e-109

Ethanolamine utilization protein EutL, microcompartment shell protein [Amino acid transport and metabolism];


Pssm-ID: 443844 [Multi-domain]  Cd Length: 216  Bit Score: 312.95  E-value: 1.63e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382   4 LDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGE 83
Cdd:COG4816     2 LDPLKAKVLAEVVIANVDPDLAEKLGLDPKYRSIGIITADTDDVPYIAADEATKAANVEVVYARSFYGGAGHASGPLAGE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  84 VLIMLGGPNPAEVRAGLDAMVANIESGAAFQWANDAEDTAFLAHVVSRTGSYLSATAGCRLGDPMAYLVAPPLEATFGID 163
Cdd:COG4816    82 VIGILAGPDPAEVRSGLEAALDFLENTAGFVSANDDGHIEFYAHYISRTGSYLSKAAGIPEGEAFAYLIAPPLEAVYGLD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1132110382 164 AALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLDIARNPIQR 218
Cdd:COG4816   162 AALKAADVEVVVFYGPPSETNFSGELLTGSQSACRAACDAFREAVLKVAENPKSY 216
BMC_EutL_repeat1 cd07049
ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1; ...
 11-113 1.02e-53

ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1; EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).


Pssm-ID: 132889  Cd Length: 103  Bit Score: 167.59  E-value: 1.02e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  11 VTAMRVIASVNDGFARELKLPPHIRSLGLITADSDDVAYIAADEATKQAMVEVVYGRSLYAGAAHSPSPTSGEVLIMLGG 90
Cdd:cd07049     1 VLAVKVIPNVDPDLAKELSLPPHHRSLGIITADSDDVTYTALDEATKAAEVEVVYARSFYAGAAHASTPLAGEVIGILAG 80

                          90       100
                  ....*....|....*....|...
gi 1132110382  91 PNPAEVRAGLDAMVANIESGAAF 113
Cdd:cd07049    81 PSPAEVRSGLNAAIDFIENEAYF 103
BMC_EutL_repeat2 cd07050
ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2; ...
 131-217 4.81e-44

ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2; EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).


Pssm-ID: 132890  Cd Length: 87  Bit Score: 142.32  E-value: 4.81e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382 131 RTGSYLSATAGCRLGDPMAYLVAPPLEATFGIDAALKSADVQLVTYVPPPSETNYSAAFMTGSQAACKAACNAFADAVLD 210
Cdd:cd07050     1 RTGSYLSKTAGIAEGEALAYLIAPPLEAMYGLDAALKAADVELATFFPPPSETNFGGALLTGSQSACKAACNAFAEAVLE 80


                  ....*..
gi 1132110382 211 IARNPIQ 217
Cdd:cd07050    81 IAANPRE 87
PRK15415 PRK15415
propanediol utilization microcompartment protein PduB;
16-200 1.56e-11

propanediol utilization microcompartment protein PduB;


Pssm-ID: 185313 [Multi-domain]  Cd Length: 266  Bit Score: 62.05  E-value: 1.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  16 VIASVNDGFARELKLPPHIRSLGLITADSDDVAYI-AADEATKQAMVEVV---YGRSLYAGAAHSpsptsgeVLIMLGGP 91
Cdd:PRK15415   56 VIANVDSALLEAMKLEKKYRSIGILGARTGAGPQImAADEAVKATNTEVVsieLPRDTKGGAGHG-------SLIIFGAE 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  92 NPAEVRAGLDAMVANIESGAAFQWANDAEDTAFlaHVVSRTGSYLSATAGCRLGDPMAYLVAPPleATFGI---DAALKS 168
Cdd:PRK15415  129 DVSDVRRAVEVALKELDRTFGDVYGNEAGHLEL--QYTARASYALEKAFGAPLGKAFGIIVGAP--AGIGVvmaDTALKS 204

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1132110382 169 ADVQLVTYVPPPSETNYSAA---FMTGSQAACKAA 200
Cdd:PRK15415  205 ANVDVVAYSSPAHGTSFSNEvilTISGDSGAVRQA 239
BMC_PduB_repeat1 cd07047
1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat ...
 16-119 4.50e-06

1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1; PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).


Pssm-ID: 132887  Cd Length: 134  Bit Score: 44.75  E-value: 4.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1132110382  16 VIASVNDGFARELKLPPHIRSLGLITADSDDVAYI-AADEATKQAMVEVV---YGRSLYAGAAHSpsptsgeVLIMLGGP 91
Cdd:cd07047    15 VIANVDPLLLEKMKLDKKYRSIGILGARTGAGPQImAADEAVKATNTEVIsieLPRDTKGGAGHG-------SLILFGAE 87

                          90       100
                  ....*....|....*....|....*...
gi 1132110382  92 NPAEVRAGLDAMVANIESGAAFQWANDA 119
Cdd:cd07047    88 DVSDVRRAVEVALSETEKTFGDVYGSEA 115
BMC smart00877
Bacterial microcompartments are primitive organelles composed entirely of protein subunits; ...
 150-211 1.85e-05

Bacterial microcompartments are primitive organelles composed entirely of protein subunits; The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.


Pssm-ID: 197945  Cd Length: 75  Bit Score: 41.40  E-value: 1.85e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1132110382  150 YLVAPPLEATFGIDAALKSADVQLVTYVPPPSetNYSAAFMTGSQAACKAACNAFADAVLDI 211
Cdd:smart00877   5 IETRGAAAAIEAADAALKAANVELVGYESIGG--GKVTVIITGDVAAVRAAVEAGLEAAERL 64
BMC pfam00936
BMC domain; Bacterial microcompartments are primitive organelles composed entirely of protein ...
 36-102 3.24e-05

BMC domain; Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.


Pssm-ID: 425954 [Multi-domain]  Cd Length: 74  Bit Score: 40.90  E-value: 3.24e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1132110382  36 SLGLITADSDDVAYIAADEATKQAMVEVVYGRslyagaahspSPTSGEVLIMLGGpNPAEVRAGLDA 102
Cdd:pfam00936   1 ALGLIETRGLAAGIEAADAMLKAANVELVGYE----------LIGGGKVTVIITG-DVAAVKAAVEA 56
BMC cd06169
Bacterial Micro-Compartment (BMC) domain; Bacterial micro-compartments are primitive ...
 152-207 4.19e-05

Bacterial Micro-Compartment (BMC) domain; Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypothesized to represent the flat facets of the polyhedral organelles outer shell. Although it has been suggested that other homologous proteins in this family might also form hexamers and play similar functional roles in the construction of their corresponding organelle outer shell at present no experimental evidence directly supports this view.


Pssm-ID: 132884  Cd Length: 62  Bit Score: 40.32  E-value: 4.19e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1132110382 152 VAPPLEATFGIDAALKSADVQLVTYVPPPSeTNYSAAFMTGSQAACKAACNAFADA 207
Cdd:cd06169     7 VRGLAAAIVAADAAVKAADVELVGIERAGG-GGLVTLIIRGDVSAVKAAVEAAEQA 61
BMC smart00877
Bacterial microcompartments are primitive organelles composed entirely of protein subunits; ...
 36-108 4.54e-04

Bacterial microcompartments are primitive organelles composed entirely of protein subunits; The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.


Pssm-ID: 197945  Cd Length: 75  Bit Score: 37.55  E-value: 4.54e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1132110382   36 SLGLITADSDDVAYIAADEATKQAMVEVVYgrslyagaahSPSPTSGEVLIMLGGpNPAEVRAGLDAMVANIE 108
Cdd:smart00877   1 ALGIIETRGAAAAIEAADAALKAANVELVG----------YESIGGGKVTVIITG-DVAAVRAAVEAGLEAAE 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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