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Conserved domains on  [gi|1091034295|gb|OHP69993|]
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cell division protein [Staphylococcus sp. HMSC062A01]

Protein Classification

YggT family protein( domain architecture ID 10002377)

YggT family protein similar to integral membrane protein YlmG that might be related to chloroplast and cyanobacterial division processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 6-88 1.43e-15

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 65.14  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091034295  6 LATIFNFIIFLVQIYYFGMIIYFFTSWVPNIRESKFGEILGKLYEPFLEPFRKIIPPIGMIDISSLVALFVLVLFQAGLR 85
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ...
gi 1091034295 86 SIF 88
Cdd:COG0762   81 GLL 83
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 6-88 1.43e-15

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 65.14  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091034295  6 LATIFNFIIFLVQIYYFGMIIYFFTSWVPNIRESKFGEILGKLYEPFLEPFRKIIPPIGMIDISSLVALFVLVLFQAGLR 85
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ...
gi 1091034295 86 SIF 88
Cdd:COG0762   81 GLL 83
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 15-81 3.51e-10

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 50.95  E-value: 3.51e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1091034295 15 FLVQIYYFGMIIYFFTSWV-PNIRESKFGEILGKLYEPFLEPFRKIIPPIGMIDISSLVALFVLVLFQ 81
Cdd:pfam02325  2 TLLSLYILLLIIRALLSWVpPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLR 69
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 6-88 1.43e-15

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 65.14  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1091034295  6 LATIFNFIIFLVQIYYFGMIIYFFTSWVPNIRESKFGEILGKLYEPFLEPFRKIIPPIGMIDISSLVALFVLVLFQAGLR 85
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ...
gi 1091034295 86 SIF 88
Cdd:COG0762   81 GLL 83
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 15-81 3.51e-10

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 50.95  E-value: 3.51e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1091034295 15 FLVQIYYFGMIIYFFTSWV-PNIRESKFGEILGKLYEPFLEPFRKIIPPIGMIDISSLVALFVLVLFQ 81
Cdd:pfam02325  2 TLLSLYILLLIIRALLSWVpPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLR 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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