|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
14-510 |
0e+00 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 718.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 14 VLVSFAFYKKISSDdKIKNAELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEE 93
Cdd:PRK12704 18 AVIGYFVRKKIAEA-KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 94 HLDSREDEVNKREKLLDS-------KQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIK 166
Cdd:PRK12704 97 NLDRKLELLEKREEELEKkekeleqKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 167 EVETQAKQTAQKKAREIVSTAIQRCAVDHVVDYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILS 246
Cdd:PRK12704 177 EIEEEAKEEADKKAKEILAQAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDTPEAVILS 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 247 GFDPIRREIARICLEKLVSDGRIHPARVEEVYNYAKEEVYNKIIERGEQVAMEVDVQNLNPKLIELLGRLQFRTSYGQNV 326
Cdd:PRK12704 257 GFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEEIREEGEQAVFELGIHGLHPELIKLLGRLKYRTSYGQNV 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 327 LQHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAIDFEQEGTHQQIGADLAKRYGESDEIVHCIAAHHEDIPPNTIE 406
Cdd:PRK12704 337 LQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKYKESPVVINAIAAHHGDEEPTSIE 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 407 AILVLAGDAVSAARPGARRESLEAYIKRLEKLETLANSFGGVEKSYAIQAGREIRIMVRPDVIDDTGSVKLARDVAKKIE 486
Cdd:PRK12704 417 AVLVAAADAISAARPGARRETLENYIKRLEKLEEIANSFEGVEKAYAIQAGREIRVIVKPDKVDDLQAVRLARDIAKKIE 496
|
490 500
....*....|....*....|....
gi 1083713481 487 RELEYPGQIKVSVIRETRTVEFAK 510
Cdd:PRK12704 497 EELQYPGQIKVTVIRETRAVEYAK 520
|
|
| RNase_Y |
TIGR03319 |
ribonuclease Y; Members of this family are RNase Y, an endoribonuclease. The member from ... |
15-510 |
0e+00 |
|
ribonuclease Y; Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA]
Pssm-ID: 188306 [Multi-domain] Cd Length: 514 Bit Score: 706.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 15 LVSFAFYKKISsDDKIKNAELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEEH 94
Cdd:TIGR03319 13 IIGYLLRKRIA-EKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREET 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 95 LDSR-------EDEVNKREKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKE 167
Cdd:TIGR03319 92 LDRKmesldkkEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 168 VETQAKQTAQKKAREIVSTAIQRCAVDHVVDYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILSG 247
Cdd:TIGR03319 172 IEEEAKEEADKKAKEILATAIQRYAGDHVAETTVSVVNLPNDEMKGRIIGREGRNIRALETLTGVDLIIDDTPEAVILSG 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 248 FDPIRREIARICLEKLVSDGRIHPARVEEVYNYAKEEVYNKIIERGEQVAMEVDVQNLNPKLIELLGRLQFRTSYGQNVL 327
Cdd:TIGR03319 252 FDPVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFDLGVHGLHPELIKLLGRLKFRTSYGQNVL 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 328 QHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAIDFEQEGTHQQIGADLAKRYGESDEIVHCIAAHHEDIPPNTIEA 407
Cdd:TIGR03319 332 QHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKYKESPEVVNAIAAHHGDVEPTSIEA 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 408 ILVLAGDAVSAARPGARRESLEAYIKRLEKLETLANSFGGVEKSYAIQAGREIRIMVRPDVIDDTGSVKLARDVAKKIER 487
Cdd:TIGR03319 412 VLVAAADALSAARPGARRESLENYIKRLEKLEEIANSFEGVEKSYAIQAGREIRVMVKPEKISDDQAVVLARDIAKKIEE 491
|
490 500
....*....|....*....|...
gi 1083713481 488 ELEYPGQIKVSVIRETRTVEFAK 510
Cdd:TIGR03319 492 ELEYPGQIKVTVIRETRAVEYAK 514
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
13-510 |
3.66e-178 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 510.41 E-value: 3.66e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 13 LVLVSFAFYKKISSDdkiknaelRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKE 92
Cdd:PRK12705 19 GVLVVLLKKRQRLAK--------EAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 93 EHLDSREDEVNKREKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQA 172
Cdd:PRK12705 91 EQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 173 KQTAQKKAREIVSTAIQRCAVDHVVDYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILSGFDPIR 252
Cdd:PRK12705 171 DLEAERKAQNILAQAMQRIASETASDLSVSVVPIPSDAMKGRIIGREGRNIRAFEGLTGVDLIIDDTPEAVVISSFNPIR 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 253 REIARICLEKLVSDGRIHPARVEEVYNYAKEEVYNKIIERGEQVAMEVDVQNLNPKLIELLGRLQFRTSYGQNVLQHSVE 332
Cdd:PRK12705 251 REIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIYEIGEEVLEELGIFDLKPGLVRLLGRLYFRTSYGQNVLSHSLE 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 333 VAHISSLMAQELGVNVRLARRAGLLHDIGKAIDFEQEGTHQQIGADLAKRYGESDEIVHCIAAHHEDIPPNTIEAILVLA 412
Cdd:PRK12705 331 VAHLAGIIAAEIGLDPALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKFNEPDEVINAIASHHNKVNPETVYSVLVQI 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 413 GDAVSAARPGARRESLEAYIKRLEKLETLANSFGGVEKSYAIQAGREIRIMVRPDVIDDTGSVKLARDVAKKIERELEYP 492
Cdd:PRK12705 411 ADALSAARPGARRESLDEYVQRLEELEQIAESFPGVEKAYAIQAGRELRVIVEPEKVSDAQATLLARDIAKKIENDLTYP 490
|
490
....*....|....*...
gi 1083713481 493 GQIKVSVIRETRTVEFAK 510
Cdd:PRK12705 491 GPIKVTLIRETRAVEYAR 508
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
33-510 |
4.98e-167 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 483.22 E-value: 4.98e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 33 AELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEEHLDSREDEVNKREKLLDSK 112
Cdd:PRK00106 51 AERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 113 QEEVQGLKK-------KLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQAKQTAQKKAREIVS 185
Cdd:PRK00106 131 EQSLTDKSKhidereeQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLA 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 186 TAIQRCAVDHVVDYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILSGFDPIRREIARICLEKLVS 265
Cdd:PRK00106 211 QAMQRLAGEYVTEQTITTVHLPDDNMKGRIIGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLIK 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 266 DGRIHPARVEEVYNYAKEEVYNKIIERGEQVAMEVDVQNLNPKLIELLGRLQFRTSYGQNVLQHSVEVAHISSLMAQELG 345
Cdd:PRK00106 291 DGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGILAGELG 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 346 VNVRLARRAGLLHDIGKAIDFEQEGTHQQIGADLAKRYGESDEIVHCIAAHHEDIPPNTIEAILVLAGDAVSAARPGARR 425
Cdd:PRK00106 371 ENVALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKYKEHPVVVNTIASHHGDVEPESVIAVIVAAADALSSARPGARN 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 426 ESLEAYIKRLEKLETLANSFGGVEKSYAIQAGREIRIMVRPDVIDDTGSVKLARDVAKKIERELEYPGQIKVSVIRETRT 505
Cdd:PRK00106 451 ESMENYIKRLRDLEEIANSFDGVQNSFALQAGREIRIMVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVIRELRA 530
|
....*
gi 1083713481 506 VEFAK 510
Cdd:PRK00106 531 VDYAK 535
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
20-195 |
1.98e-50 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 171.22 E-value: 1.98e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 20 FYKKISSDDKIKNAELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEE------ 93
Cdd:pfam12072 19 LVRKSIAEAKIGSAEELAKRIIEEAKKEAETKKKEALLEAKEEIHKLRAEAERELKERRNELQRQERRLLQKEEtldrkd 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 94 -HLDSREDEVNKREKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQA 172
Cdd:pfam12072 99 eSLEKKEESLEKKEKELEAQQQQLEEKEEELEELIEEQRQELERISGLTSEEAKEILLDEVEEELRHEAAVMIKEIEEEA 178
|
170 180
....*....|....*....|...
gi 1083713481 173 KQTAQKKAREIVSTAIQRCAVDH 195
Cdd:pfam12072 179 KEEADKKAKEIIALAIQRCAADH 201
|
|
| RnaY |
COG1418 |
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
307-504 |
1.35e-47 |
|
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only];
Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 163.15 E-value: 1.35e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 307 PKLIELLgrLQFRTSYGQNVLQHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAIDFEQEGTHQQIGADLAKRYG-- 384
Cdd:COG1418 2 PELIKLV--KYLRTSYGQHDLQHSLRVAKLAGLIAAEEGADVEVAKRAALLHDIGKAKDHEVEGSHAEIGAELARKYLes 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 385 ------ESDEIVHCIAAHHED--IPPNTIEAILVLAGDAVSAArpGARresleayikrlekletlansfgGVEKSYAI-- 454
Cdd:COG1418 80 lgfpeeEIEAVVHAIEAHSFSggIEPESLEAKIVQDADRLDAL--GAI----------------------GVARAFAIgg 135
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 455 QAGREIR---------IMVRPDVIDDTGSVKLARDVAKKIERELE-YPgqikVSVIRETR 504
Cdd:COG1418 136 QAGRELRdpedtainhFYEKLLKLKDLMATELARDIAKKREEFMEeFP----VTVIRETR 191
|
|
| KH-I_RNaseY |
cd22431 |
type I K homology (KH) RNA-binding domain found in ribonuclease Y (RNase Y) and similar ... |
198-276 |
1.46e-43 |
|
type I K homology (KH) RNA-binding domain found in ribonuclease Y (RNase Y) and similar proteins; RNase Y is an endoribonuclease that initiates mRNA decay. It initiates the decay of all SAM-dependent riboswitches, such as yitJ riboswitch. RNase Y is involved in processing of the gapA operon mRNA and it cleaves between cggR and gapA. It is also the decay-initiating endonuclease for rpsO mRNA. It plays a role in degradation of type I toxin-antitoxin system bsrG/SR4 RNAs and also a minor role in degradation of type I toxin-antitoxin system bsrE/SR5 degradation.
Pssm-ID: 411859 [Multi-domain] Cd Length: 79 Bit Score: 148.50 E-value: 1.46e-43
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1083713481 198 DYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILSGFDPIRREIARICLEKLVSDGRIHPARVEE 276
Cdd:cd22431 1 ERTVSTVNLPNDEMKGRIIGREGRNIRAFEAATGVDLIIDDTPEAVILSGFDPVRREVARRTLEKLVEDGRIHPARIEE 79
|
|
| Krr1 |
COG1094 |
rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and ... |
179-291 |
1.14e-25 |
|
rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440711 [Multi-domain] Cd Length: 177 Bit Score: 103.37 E-value: 1.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 179 KAREIVSTAIQRCAVDHVV-----DYTTSVVQLPN--------EEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVIl 245
Cdd:COG1094 55 KARDIVKAIGRGFSPEKALrllddDYMLEVIDLPDvgkspnalDRIKGRIIGREGRTRRIIEELTGVDISIYGKTVAII- 133
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1083713481 246 SGFDPIrrEIARICLEKLVsDGRIHPArVEEVYNYAKEEVYNKIIE 291
Cdd:COG1094 134 GDFDQV--EIAREAIEMLI-DGRIHPT-VYEFLEKARRELKRRRLE 175
|
|
| HDIG |
TIGR00277 |
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
322-399 |
4.25e-22 |
|
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits.
Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 90.09 E-value: 4.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 322 YGQNVLQHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAIDFEQ--EGTHQQIGADLAKRYGESDEIVHCIAAHHED 399
Cdd:TIGR00277 1 YGQNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPITREGviFESHVVVGAEIARKYGEPLEVIDIIAEHHGK 80
|
|
| HDc |
smart00471 |
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
322-425 |
1.81e-13 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 66.94 E-value: 1.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 322 YGQNVLQHSVEVAHISSLMAQELG-VNVRLARRAGLLHDIGKA-------IDFEQEGTHQQIGADLAKRYGESDEIV--- 390
Cdd:smart00471 1 SDYHVFEHSLRVAQLAAALAEELGlLDIELLLLAALLHDIGKPgtpdsflVKTSVLEDHHFIGAEILLEEEEPRILEeil 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1083713481 391 -HCIAAHHE-----DIPPNTIEAILVLAGDAVSAARPGARR 425
Cdd:smart00471 81 rTAILSHHErpdglRGEPITLEARIVKVADRLDALRADRRY 121
|
|
| HD |
pfam01966 |
HD domain; HD domains are metal dependent phosphohydrolases. |
326-419 |
8.46e-13 |
|
HD domain; HD domains are metal dependent phosphohydrolases.
Pssm-ID: 460398 [Multi-domain] Cd Length: 110 Bit Score: 64.56 E-value: 8.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 326 VLQHSVEVAHISSLMAQELG-VNVRLARRAGLLHDIGK------AIDFEQEGTHQQIGADLAKRYGE---SDEIVHCIAA 395
Cdd:pfam01966 1 RLEHSLRVALLARELAEELGeLDRELLLLAALLHDIGKgpfgdeKPEFEIFLGHAVVGAEILRELEKrlgLEDVLKLILE 80
|
90 100 110
....*....|....*....|....*....|
gi 1083713481 396 HHEDIP------PNTIEAILVLAGDAVSAA 419
Cdd:pfam01966 81 HHESWEgagypeEISLEARIVKLADRLDAL 110
|
|
| HDGYP |
COG2206 |
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal ... |
179-398 |
4.56e-12 |
|
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal transduction mechanisms];
Pssm-ID: 441808 [Multi-domain] Cd Length: 316 Bit Score: 66.92 E-value: 4.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 179 KAREIVSTAIQRCAVDHVVDYTTSVVQLPNEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVILSGFDPIRREIARI 258
Cdd:COG2206 2 LLLLLLLLLLLLLLLLLALLLLLLLLLLLLLLLLLLLLLALLALLLLLLLLLALLALLLALLALLLLLLLLLLLLSLLLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 259 CLEKLVSDGRIHPARVEEVYNYAkEEVYNKIIERGEQVAMEVDvQNLNPKLIELLGRLQFRTSYgqnVLQHSVEVAHISS 338
Cdd:COG2206 82 VALLLAELLLLLAALESLLAELF-EELRLGLLEELKKLVEELD-ELLPDALLALLAALDAKDPY---TYGHSVRVAVLAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083713481 339 LMAQELGVN---VRLARRAGLLHDIGK---------------AIDFEQEGTHQQIGADLAKRYGESDEIVHCIAAHHE 398
Cdd:COG2206 157 ALARELGLSeeeLEDLGLAALLHDIGKigipdeilnkpgkltDEEFEIIKKHPEYGYEILKKLPGLSEVAEIVLQHHE 234
|
|
| HDc |
cd00077 |
Metal dependent phosphohydrolases with conserved 'HD' motif |
324-438 |
1.65e-09 |
|
Metal dependent phosphohydrolases with conserved 'HD' motif
Pssm-ID: 238032 [Multi-domain] Cd Length: 145 Bit Score: 56.19 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 324 QNVLQHSVEVAHISSLMAQELG---VNVRLARRAGLLHDIGKAID--------FEQEGTHQQIGADLAKR------YGES 386
Cdd:cd00077 1 EHRFEHSLRVAQLARRLAEELGlseEDIELLRLAALLHDIGKPGTpdaiteeeSELEKDHAIVGAEILREllleevIKLI 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1083713481 387 DEIVHCIAAHHEDI------------PPNTIEAILVLAGDAVSAARPGARRESLEAYIKRLEKL 438
Cdd:cd00077 81 DELILAVDASHHERldglgypdglkgEEITLEARIVKLADRLDALRRDSREKRRRIAEEDLEEL 144
|
|
| HDOD |
COG1639 |
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms]; |
324-435 |
6.12e-08 |
|
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms];
Pssm-ID: 441246 [Multi-domain] Cd Length: 244 Bit Score: 53.82 E-value: 6.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 324 QNVLQHSVEVAHISSLMAQELG-VNVRLARRAGLLHDIGKAI------------------------DFEQE---GTHQQI 375
Cdd:COG1639 103 RRFWRHSLAVAAAARALARRLGlLDPEEAFLAGLLHDIGKLVllslfpeeyaellalaeadglslaEAEREvlgTDHAEL 182
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083713481 376 GADLAKRYGESDEIVHCIAAHH--EDIPPNTIEAILVLAGDAVSAARPGARRESLEAYIKRL 435
Cdd:COG1639 183 GAALARKWGLPEELVEAIRYHHdpEAAGEHRRLAALVHLANRLARALGEEDPALPEAALALL 244
|
|
| HDOD |
pfam08668 |
HDOD domain; |
328-398 |
1.23e-06 |
|
HDOD domain;
Pssm-ID: 430141 [Multi-domain] Cd Length: 196 Bit Score: 49.15 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 328 QHSVEVAHISSLMAQELGV-NVRLARRAGLLHDIGKAI-------DFEQEG--------------------THQQIGADL 379
Cdd:pfam08668 97 EHSLACALAARLLARRLGLdDPEEAFLAGLLHDIGKLIllsllpdKYEELLekaaeegislleaerellgtDHAEVGAAL 176
|
90
....*....|....*....
gi 1083713481 380 AKRYGESDEIVHCIAAHHE 398
Cdd:pfam08668 177 LERWNLPEELVEAIAYHHN 195
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-198 |
6.11e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 22 KKISSDDKIKNAELRVKKLVEDAERKAEVIRREaviEAKDEVIKAR-KEFEEESKSRRSELIGFEKRIVSKEEHLDSRED 100
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA---EEENKIKAAEeAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 101 EVNKREKLLDSKQEEvqglKKKLENVYQQQIEALEKVSNLTREdakklllvhiEREVKKEAAILIKEvETQAKQTAQKKA 180
Cdd:PTZ00121 1700 EAKKAEELKKKEAEE----KKKAEELKKAEEENKIKAEEAKKE----------AEEDKKKAEEAKKD-EEEKKKIAHLKK 1764
|
170
....*....|....*...
gi 1083713481 181 REIVSTAIQRCAVDHVVD 198
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIE 1782
|
|
| YhaM |
COG3481 |
3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily ... |
327-418 |
8.07e-06 |
|
3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily [Translation, ribosomal structure and biogenesis]; 3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 442704 [Multi-domain] Cd Length: 316 Bit Score: 47.88 E-value: 8.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 327 LQHSVEVAHISSLMAQE-LGVNVRLARRAGLLHDIGK--------AIDFEQEGT---HQQIGADL----AKRYGESDE-- 388
Cdd:COG3481 163 LEHTLSVARLAKALADLyPELNRDLLIAGAILHDIGKvrelsgppGTEYTDEGQllgHIVLGVEMieeaAAELGDFPEel 242
|
90 100 110
....*....|....*....|....*....|....*....
gi 1083713481 389 ---IVHCIAAHHED------IPPNTIEAILVLAGDAVSA 418
Cdd:COG3481 243 lllLKHMILSHHGElewgspKRPKTPEAEILHYADNLDA 281
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-175 |
3.33e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 22 KKISSDDKIKNAELrvKKLVEDAERKAEVIRREAVIEAKDEVIKARkefEEESKSRRSELIGFEKRIVSKEEHLdSREDE 101
Cdd:PTZ00121 1653 KKAEEENKIKAAEE--AKKAEEDKKKAEEAKKAEEDEKKAAEALKK---EAEEAKKAEELKKKEAEEKKKAEEL-KKAEE 1726
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1083713481 102 VNKrEKLLDSKQEEVQGLKK----KLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQAKQT 175
Cdd:PTZ00121 1727 ENK-IKAEEAKKEAEEDKKKaeeaKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
33-210 |
9.42e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 33 AELR-VKKLVEDaerKAEVIRREAVIeAKDEVIKARKE---FEEESKS-------------RRSELIGFEKR-------- 87
Cdd:pfam15921 331 SELReAKRMYED---KIEELEKQLVL-ANSELTEARTErdqFSQESGNlddqlqklladlhKREKELSLEKEqnkrlwdr 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 88 -------IVSKEEHLDSREDEVNKREKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTRE-DAKKLLLVHIEREVKK 159
Cdd:pfam15921 407 dtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQlESTKEMLRKVVEELTA 486
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1083713481 160 EAAILIKEVETQAKQTA--QKKAREIVSTAIQRCAVDHVVDYTTSVVQ-LPNEE 210
Cdd:pfam15921 487 KKMTLESSERTVSDLTAslQEKERAIEATNAEITKLRSRVDLKLQELQhLKNEG 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-190 |
9.67e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 9.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 21 YKKISSDDKIKNAELRVKKL-------------VEDAERKAEVIRRE-AVIEAKDEVIK-ARKEFEEESKSRRSELIGFE 85
Cdd:COG1196 215 YRELKEELKELEAELLLLKLreleaeleeleaeLEELEAELEELEAElAELEAELEELRlELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 86 KRIVSKEEHLDSREDEVNKREKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILI 165
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180
....*....|....*....|....*
gi 1083713481 166 KEVETQAKQTAQKKAREIVSTAIQR 190
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELA 399
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
26-182 |
1.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 26 SDDKIKNAELRVKKLVEDAE--RKAEVIRREAviEAKDEVIKARKEFEEESKSRRSELIG-FEKRIVSKEEHLDSREDEV 102
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEekKKAEEAKKAE--EDKNMALRKAEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAK 1619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 103 NKREKLldSKQEEVqglKKKLENVYQQQIEALEKVSNLTRED----AKKLLLVHIEREVKKEAAILIKEVETQAKQTAQK 178
Cdd:PTZ00121 1620 IKAEEL--KKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
....
gi 1083713481 179 KARE 182
Cdd:PTZ00121 1695 KKEA 1698
|
|
| PgpH |
COG1480 |
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms]; ... |
328-419 |
2.17e-04 |
|
Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily [Signal transduction mechanisms];
Pssm-ID: 441089 [Multi-domain] Cd Length: 692 Bit Score: 44.06 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 328 QHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAID---F-E-QEGT---HQQI---------------GADLAKRYG 384
Cdd:COG1480 480 HHSLMVANLAEAAAEAIGANPLLARVGAYYHDIGKMKRplyFiEnQMGGenpHDKLspslsaliiishvkdGVELARKYK 559
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1083713481 385 ESDEIVHCIAAHH--------------EDIPPNTIE---------------AILVLAgDAVSAA 419
Cdd:COG1480 560 LPKEIIDFIRQHHgttlvkyfyhkakeENGGEEVDEedfrypgpkpqsketAIVMLA-DSVEAA 622
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-190 |
2.30e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 33 AELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEEHLDS----REDEVNKREKL 108
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeaEEALLERLERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 109 LDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQAKQTAQKKAREIVSTAI 188
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
..
gi 1083713481 189 QR 190
Cdd:COG1196 500 EA 501
|
|
| Cas10_III |
cd09680 |
CRISPR/Cas system-associated protein Cas10; CRISPR (Clustered Regularly Interspaced Short ... |
354-399 |
2.72e-04 |
|
CRISPR/Cas system-associated protein Cas10; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family
Pssm-ID: 187811 [Multi-domain] Cd Length: 650 Bit Score: 43.47 E-value: 2.72e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1083713481 354 AGLLHDIGKAI----DFEQEGTHQQIGADLAKRYGESDEI-VHCIAAHHED 399
Cdd:cd09680 4 GALLHDIGKVVqragLGFYSKTHSKFGAEFLKEFSKNKDDlGDCISYHHTK 54
|
|
| YqeK |
COG1713 |
Diadenosine tetraphosphatase YqeK or a related HD superfamily phosphohydrolase [Signal ... |
327-396 |
3.11e-04 |
|
Diadenosine tetraphosphatase YqeK or a related HD superfamily phosphohydrolase [Signal transduction mechanisms, General function prediction only];
Pssm-ID: 441319 [Multi-domain] Cd Length: 184 Bit Score: 41.64 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 327 LQHSVEVAHISSLMAQELGVNVRLARRAGLLHDIGKAI-----------------DFEQEGT---HQQIGADLAKR-YGE 385
Cdd:COG1713 19 YEHTLGVAETAVELAERYGVDVEKAELAGLLHDYAKELppeellelakeygldldELEEYNPellHGPVGAYLAKEeFGI 98
|
90
....*....|..
gi 1083713481 386 SD-EIVHCIAAH 396
Cdd:COG1713 99 TDeEILNAIRYH 110
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
27-124 |
4.02e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 27 DDKIKNAELRVKKLvedaerKAEVIRREAVIEAKDEVIkarKEFEEESKSRRSEligfEKRIVSKEEHLDSREDEVNKRE 106
Cdd:COG2433 412 EEEIRRLEEQVERL------EAEVEELEAELEEKDERI---ERLERELSEARSE----ERREIRKDREISRLDREIERLE 478
|
90
....*....|....*...
gi 1083713481 107 KLLDSKQEEVQGLKKKLE 124
Cdd:COG2433 479 RELEEERERIEELKRKLE 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-182 |
4.21e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 22 KKISSDDKIKNAELRVK----KLVEDAERKAEVIRREAVIEAKDEVIKaRKEFEEESKS---RRSEligfEKRIVSKEEH 94
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKaeeaKKAEEAKIKAEELKKAEEEKKKVEQLK-KKEAEEKKKAeelKKAE----EENKIKAAEE 1666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 95 LDSREDEVNKREKLLDSKQEEvqglKKKLENVYQQQIEA--LEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQA 172
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKKAEEDE----KKAAEALKKEAEEAkkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
170
....*....|
gi 1083713481 173 KQTAQKKARE 182
Cdd:PTZ00121 1743 KKKAEEAKKD 1752
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-190 |
5.92e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 26 SDDKIKNAELRVKKLVEDAERKAEVIRREAVIEAKDEVIKARKEFEEESKSRRSELigfEKRIVSKEEHLDSREDEVNKR 105
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA---EAELAEAEEELEELAEELLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 106 EKLLDSKQEEVQGLKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQAKQTAQKKAREIVS 185
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
....*
gi 1083713481 186 TAIQR 190
Cdd:COG1196 472 AALLE 476
|
|
| PRK13763 |
PRK13763 |
putative RNA-processing protein; Provisional |
211-280 |
6.45e-04 |
|
putative RNA-processing protein; Provisional
Pssm-ID: 237494 [Multi-domain] Cd Length: 180 Bit Score: 40.62 E-value: 6.45e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 211 MKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVIlsGfDPIRREIARICLEKLVsDGRIHPArveeVYNY 280
Cdd:PRK13763 105 IKGRIIGEGGKTRRIIEELTGVDISVYGKTVAII--G-DPEQVEIAREAIEMLI-EGAPHGT----VYKF 166
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-183 |
9.73e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 22 KKISSDDKIKNAELRVKklvEDAERKAEVIRREAviEAKDEVIKARKEFEEESKSRRSELIGFEKRivsKEEHLDSREDE 101
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKA---AAAKKKADEAKKKA--EEKKKADEAKKKAEEAKKADEAKKKAEEAK---KAEEAKKKAEE 1468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 102 VNKREKlLDSKQEEvqglKKKLENVYQQQIEALEKVSNLTREDAKKLLLVHIEREVKKEAAILIKEVETQAKQTAQKKAR 181
Cdd:PTZ00121 1469 AKKADE-AKKKAEE----AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
..
gi 1083713481 182 EI 183
Cdd:PTZ00121 1544 EK 1545
|
|
| PRK03007 |
PRK03007 |
deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional |
327-361 |
1.47e-03 |
|
deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Pssm-ID: 235098 [Multi-domain] Cd Length: 428 Bit Score: 41.09 E-value: 1.47e-03
10 20 30
....*....|....*....|....*....|....*
gi 1083713481 327 LQHSVEVAHISSLMAQELGVNVRLARRAGLLHDIG 361
Cdd:PRK03007 72 LTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-182 |
1.91e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 28 DKIKNAElrVKKLVEDA----ERKAEVIRR-EAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEEHLDSREDEV 102
Cdd:PTZ00121 1555 EELKKAE--EKKKAEEAkkaeEDKNMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 103 NKREKLLDSKQEEvqglKKKLENVYQQQIEALEKVSNLTR---EDAKKLLLVHIEREVKKEAAILIKEVETQAKQTAQKK 179
Cdd:PTZ00121 1633 KKVEQLKKKEAEE----KKKAEELKKAEEENKIKAAEEAKkaeEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
...
gi 1083713481 180 ARE 182
Cdd:PTZ00121 1709 KKE 1711
|
|
| arCOG04150 |
TIGR03665 |
arCOG04150 universal archaeal KH domain protein; This family of proteins is universal among ... |
198-280 |
2.85e-03 |
|
arCOG04150 universal archaeal KH domain protein; This family of proteins is universal among the 41 archaeal genomes analyzed, and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Pssm-ID: 274711 [Multi-domain] Cd Length: 172 Bit Score: 38.70 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 198 DYTTSVVQLpnEEMKGRIIGREGRNIRAFETLTGIDLVVDDTPEAVIlsGfDPIRREIARICLEKLVsDGRIHparvEEV 277
Cdd:TIGR03665 88 EYGKSPNAL--RRIKGRIIGEGGKTRRIIEELTGVSISVYGKTVGII--G-DPEQVQIAREAIEMLI-EGAPH----GTV 157
|
...
gi 1083713481 278 YNY 280
Cdd:TIGR03665 158 YKF 160
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
50-148 |
9.68e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 36.79 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083713481 50 VIRREAVIEAKDEVIKARKEFEEESKSRRSELIGFEKRIVSKEEHLDSR-----EDEVNKREKLLDSKQEEVQGLKKKL- 123
Cdd:smart00935 3 VVDVQKILQESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDaatlsEAAREKKEKELQKKVQEFQRKQQKLq 82
|
90 100
....*....|....*....|....*
gi 1083713481 124 ENVYQQQIEALEKVSNLTREDAKKL 148
Cdd:smart00935 83 QDLQKRQQEELQKILDKINKAIKEV 107
|
|
| COG4341 |
COG4341 |
Predicted HD phosphohydrolase [General function prediction only]; |
350-396 |
9.93e-03 |
|
Predicted HD phosphohydrolase [General function prediction only];
Pssm-ID: 443482 Cd Length: 182 Bit Score: 37.19 E-value: 9.93e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083713481 350 LARRAG---------LLHDIGKAIDFEQEGT------HQQIGADLAKRYgESDEIVHCIAAH 396
Cdd:COG4341 35 LAERDGadeelvvaaLLHDIGHLLHDLGEDLdggddnHEEIAAAILRPF-FSEEVTWPVRLH 95
|
|
| |
