NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1083491184|gb|OGF93480|]
View 

hypothetical protein A3G54_00995 [Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_FULL_44_15]

Protein Classification

Tfp pilus assembly protein FimT/FimU( domain architecture ID 11471961)

Tfp pilus assembly protein FimT/FimU

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
2-54 2.08e-09

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


:

Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 51.00  E-value: 2.08e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1083491184   2 NKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNSLLGAARARVISEINYARSE 54
Cdd:COG4970     8 QRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSE 60
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
2-54 2.08e-09

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 51.00  E-value: 2.08e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1083491184   2 NKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNSLLGAARARVISEINYARSE 54
Cdd:COG4970     8 QRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSE 60
 
Name Accession Description Interval E-value
FimT COG4970
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];
2-54 2.08e-09

Type IV pilus assembly protein FimT [Cell motility, Extracellular structures];


Pssm-ID: 443996 [Multi-domain]  Cd Length: 73  Bit Score: 51.00  E-value: 2.08e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1083491184   2 NKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNSLLGAARARVISEINYARSE 54
Cdd:COG4970     8 QRGFTLIELLVVLAILAILAAIAVPSFSSLIARQRLRAAANELAAALRLARSE 60
PulG COG2165
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ...
 1-53 2.40e-06

Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 441768 [Multi-domain]  Cd Length: 99  Bit Score: 43.36  E-value: 2.40e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1083491184   1 MNKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNsllgAARARVISEINYARS 53
Cdd:COG2165     9 RQRGFTLIELLVVIAIIGILAALALPALQGARER----ARRAELRSNLRQIQQ 57
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-42 3.17e-04

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 38.13  E-value: 3.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1083491184   1 MNKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNSLLGAARA 42
Cdd:COG4968     8 RQRGFTLIELMIVVAIIGILAAIAIPSYQDYVERARRAEAKA 49
PulJ COG4795
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ...
 2-56 4.46e-04

Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443823 [Multi-domain]  Cd Length: 118  Bit Score: 37.69  E-value: 4.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1083491184   2 NKGLTLLEILVAMAIILVLgtfAVLAFSnysknSLLGAARARVISEINYARSETL 56
Cdd:COG4795     8 QRGFTLLELLVALAIFALL---LLAAYR-----GLDSVLRSRERLEQQAERLQEL 54
PilW COG4966
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];
2-51 5.21e-04

Type IV pilus assembly protein PilW [Cell motility, Extracellular structures];


Pssm-ID: 443992 [Multi-domain]  Cd Length: 158  Bit Score: 38.24  E-value: 5.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1083491184   2 NKGLTLLEILVAMAIILVLGTFAVLAFSNYSKNSLLGAARARVISEINYA 51
Cdd:COG4966     4 QRGFTLVELMVALAIGLIVLAAVLQLFLSSRRSYRTQEALARLQENGRFA 53
PilV COG4967
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];
3-47 9.53e-03

Type IV pilus assembly protein PilV [Cell motility, Extracellular structures];


Pssm-ID: 443993 [Multi-domain]  Cd Length: 86  Bit Score: 33.42  E-value: 9.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1083491184   3 KGLTLLEILVAMAIIlvlgTFAVLAFSNYSKNSLLGAARARVISE 47
Cdd:COG4967    11 RGFTLIEVLVALVIL----SIGLLGLAGLQAASLRSSQDARQRTQ 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH