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Conserved domains on  [gi|1080880312|gb|OFQ42904|]
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permease [Staphylococcus sp. HMSC075F12]

Protein Classification

DUF3267 domain-containing protein( domain architecture ID 10569430)

DUF3267 domain-containing protein similar to Streptococcus criceti surface antigen negative regulator Par

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3267 pfam11667
Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the ...
 58-149 3.52e-09

Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.


:

Pssm-ID: 431992  Cd Length: 106  Bit Score: 51.85  E-value: 3.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080880312  58 IVILGLHELIHRISFFIFSRGEQPHFKY---KKGFLLVHISKKYFNKWQFCTIMLAPMFILTGLLMFIFSIY--AYSSII 132
Cdd:pfam11667   1 LLLVILHELLHGLFFKLFGKKPSKKVKFgfkKLGPAYATSSEPLFSKKQFIIILLAPFVIIGILLLLLSLLFpsYAHYLY 80

                          90
                  ....*....|....*..
gi 1080880312 133 IMLSIHIGYCLIDLYLV 149
Cdd:pfam11667  81 LLLAINTAGSAGDLYIL 97
 
Name Accession Description Interval E-value
DUF3267 pfam11667
Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the ...
 58-149 3.52e-09

Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.


Pssm-ID: 431992  Cd Length: 106  Bit Score: 51.85  E-value: 3.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080880312  58 IVILGLHELIHRISFFIFSRGEQPHFKY---KKGFLLVHISKKYFNKWQFCTIMLAPMFILTGLLMFIFSIY--AYSSII 132
Cdd:pfam11667   1 LLLVILHELLHGLFFKLFGKKPSKKVKFgfkKLGPAYATSSEPLFSKKQFIIILLAPFVIIGILLLLLSLLFpsYAHYLY 80

                          90
                  ....*....|....*..
gi 1080880312 133 IMLSIHIGYCLIDLYLV 149
Cdd:pfam11667  81 LLLAINTAGSAGDLYIL 97
 
Name Accession Description Interval E-value
DUF3267 pfam11667
Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the ...
 58-149 3.52e-09

Putative zincin peptidase; This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.


Pssm-ID: 431992  Cd Length: 106  Bit Score: 51.85  E-value: 3.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1080880312  58 IVILGLHELIHRISFFIFSRGEQPHFKY---KKGFLLVHISKKYFNKWQFCTIMLAPMFILTGLLMFIFSIY--AYSSII 132
Cdd:pfam11667   1 LLLVILHELLHGLFFKLFGKKPSKKVKFgfkKLGPAYATSSEPLFSKKQFIIILLAPFVIIGILLLLLSLLFpsYAHYLY 80

                          90
                  ....*....|....*..
gi 1080880312 133 IMLSIHIGYCLIDLYLV 149
Cdd:pfam11667  81 LLLAINTAGSAGDLYIL 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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