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Conserved domains on  [gi|1073173602|gb|OEW02253|]
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quinol dehydrogenase ferredoxin subunit NapH [Campylobacter jejuni]

Protein Classification

quinol dehydrogenase ferredoxin subunit NapH( domain architecture ID 11484278)

quinol dehydrogenase ferredoxin subunit NapH is required for electron transfer from ubiquinol, via NapC, to the periplasmic nitrate reductase NapAB complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
napH PRK09477
quinol dehydrogenase membrane component; Provisional
 1-253 1.82e-116

quinol dehydrogenase membrane component; Provisional


:

Pssm-ID: 236535 [Multi-domain]  Cd Length: 271  Bit Score: 334.56  E-value: 1.82e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   1 MKYLIARRIVQLGILVLFSFK--ATDFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLG 78
Cdd:PRK09477    6 HRFLILRRLSQLSILALFLSGpwFGVWILKGNLSSSLLFDTIPLTDPLATLQSLAAGHLPATVALIGALIITVFYALAGG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  79 RVFCSWVCPVNLITDFAAFVRNKLTLnNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFV 158
Cdd:PRK09477   86 RAFCSWVCPVNLVTDLANWLRRKLGL-NQSATLPRNLRYWLLVLVLVGSALTGTLAWEWINPVSMLHRGLVFGFGSGWWL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 159 AFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIK-HDSDKCTKCYECIRICPEKQVLW--MVGKESTS-VKSGEC 234
Cdd:PRK09477  165 ILAIFLFDLFVVEHGWCGHLCPLGAFYGLIGKKSLIRVKaHDRQKCTRCMDCFHVCPEPQVLRppLKGKQSPSqVTSGDC 244

                         250
                  ....*....|....*....
gi 1073173602 235 IRCARCIEVCNDDALNFNI 253
Cdd:PRK09477  245 ITCGRCIDVCSEDVFNFTI 263
 
Name Accession Description Interval E-value
napH PRK09477
quinol dehydrogenase membrane component; Provisional
 1-253 1.82e-116

quinol dehydrogenase membrane component; Provisional


Pssm-ID: 236535 [Multi-domain]  Cd Length: 271  Bit Score: 334.56  E-value: 1.82e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   1 MKYLIARRIVQLGILVLFSFK--ATDFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLG 78
Cdd:PRK09477    6 HRFLILRRLSQLSILALFLSGpwFGVWILKGNLSSSLLFDTIPLTDPLATLQSLAAGHLPATVALIGALIITVFYALAGG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  79 RVFCSWVCPVNLITDFAAFVRNKLTLnNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFV 158
Cdd:PRK09477   86 RAFCSWVCPVNLVTDLANWLRRKLGL-NQSATLPRNLRYWLLVLVLVGSALTGTLAWEWINPVSMLHRGLVFGFGSGWWL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 159 AFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIK-HDSDKCTKCYECIRICPEKQVLW--MVGKESTS-VKSGEC 234
Cdd:PRK09477  165 ILAIFLFDLFVVEHGWCGHLCPLGAFYGLIGKKSLIRVKaHDRQKCTRCMDCFHVCPEPQVLRppLKGKQSPSqVTSGDC 244

                         250
                  ....*....|....*....
gi 1073173602 235 IRCARCIEVCNDDALNFNI 253
Cdd:PRK09477  245 ITCGRCIDVCSEDVFNFTI 263
napH_ TIGR02163
ferredoxin-type protein, NapH/MauN family; Most members of this family are the NapH protein, ...
 3-253 2.83e-114

ferredoxin-type protein, NapH/MauN family; Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.


Pssm-ID: 274004 [Multi-domain]  Cd Length: 255  Bit Score: 328.16  E-value: 2.83e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   3 YLIARRIVQLGILVLFSFK--ATDFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRV 80
Cdd:TIGR02163   1 FLILRRLVQLSILGLFLLGpyAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  81 FCSWVCPVNLITDFAAFVRNKLTLNNKFLiLPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVAF 160
Cdd:TIGR02163  81 FCSWVCPVNLVTDFAAWLRRKLGINKIIK-LPRNLRYWVLVLFLLLSFLSGLLIWEWFNPVGILHRGIIFGMGAGIWLIL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 161 ILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKH-DSDKCTKCYECIRICPEKQVLWMVGK--ESTSVKSGECIRC 237
Cdd:TIGR02163 160 LVFLFDLLFSERGWCGHLCPLGAFYGLIGRKSLIKIAAsDREKCTNCMDCFNVCPEPQVLRMPLKkgGSTLVLSGDCTLC 239

                         250
                  ....*....|....*.
gi 1073173602 238 ARCIEVCNDDALNFNI 253
Cdd:TIGR02163 240 GRCIDVCHEDVLGFTT 255
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
1-251 8.85e-46

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 154.06  E-value: 8.85e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   1 MKYLIARRIVQLGILVLFsfkatdFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRV 80
Cdd:COG0348     9 GRFRRLRRLVQLLFLLLF------LLGPWLRWLGDPAVLLDLAERRFYLFGLFWDFYLLALLLIGAALALFLLTLLFGRV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  81 FCSWVCPVNLITDFAAFVRNKLTLNNKFLILP-----KNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIF--ATS 153
Cdd:COG0348    83 WCGWVCPQGVLTELFSWLERKLGDRRLKLPWSlskilRWLKYIILALWLLLALLTGLTFFGYFSPIGTLLRLLLFgvLGL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 154 SWIFVAFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQVLwmvgkESTSVKSGE 233
Cdd:COG0348   163 WLLLILLAAFLLLALFLRRQWCRYLCPYGAFQGLLSDLSTLRVRYDRGDCIDCGLCVKVCPMGIDI-----RKGEINQSE 237

                         250
                  ....*....|....*...
gi 1073173602 234 CIRCARCIEVCNDDALNF 251
Cdd:COG0348   238 CINCGRCIDACPKDAIRF 255
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 195-244 6.96e-08

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 48.02  E-value: 6.96e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1073173602 195 KIKHDSDKCTKCYECIRICPE-----KQVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:pfam13237   1 KVVIDPDKCIGCGRCTAACPAgltrvGAIVERLEGEAVRIGVWKCIGCGACVEAC 55
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 174-244 5.23e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 42.00  E-value: 5.23e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1073173602 174 ICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICP-------EKQVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:cd10549    13 ICVKACPTDAIELGPNGAIARGPEIDEDKCVFCGACVEVCPtgaieltPEGKEYVPKEKEAEIDEEKCIGCGLCVKVC 90
 
Name Accession Description Interval E-value
napH PRK09477
quinol dehydrogenase membrane component; Provisional
 1-253 1.82e-116

quinol dehydrogenase membrane component; Provisional


Pssm-ID: 236535 [Multi-domain]  Cd Length: 271  Bit Score: 334.56  E-value: 1.82e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   1 MKYLIARRIVQLGILVLFSFK--ATDFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLG 78
Cdd:PRK09477    6 HRFLILRRLSQLSILALFLSGpwFGVWILKGNLSSSLLFDTIPLTDPLATLQSLAAGHLPATVALIGALIITVFYALAGG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  79 RVFCSWVCPVNLITDFAAFVRNKLTLnNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFV 158
Cdd:PRK09477   86 RAFCSWVCPVNLVTDLANWLRRKLGL-NQSATLPRNLRYWLLVLVLVGSALTGTLAWEWINPVSMLHRGLVFGFGSGWWL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 159 AFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIK-HDSDKCTKCYECIRICPEKQVLW--MVGKESTS-VKSGEC 234
Cdd:PRK09477  165 ILAIFLFDLFVVEHGWCGHLCPLGAFYGLIGKKSLIRVKaHDRQKCTRCMDCFHVCPEPQVLRppLKGKQSPSqVTSGDC 244

                         250
                  ....*....|....*....
gi 1073173602 235 IRCARCIEVCNDDALNFNI 253
Cdd:PRK09477  245 ITCGRCIDVCSEDVFNFTI 263
napH_ TIGR02163
ferredoxin-type protein, NapH/MauN family; Most members of this family are the NapH protein, ...
 3-253 2.83e-114

ferredoxin-type protein, NapH/MauN family; Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.


Pssm-ID: 274004 [Multi-domain]  Cd Length: 255  Bit Score: 328.16  E-value: 2.83e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   3 YLIARRIVQLGILVLFSFK--ATDFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRV 80
Cdd:TIGR02163   1 FLILRRLVQLSILGLFLLGpyAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  81 FCSWVCPVNLITDFAAFVRNKLTLNNKFLiLPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVAF 160
Cdd:TIGR02163  81 FCSWVCPVNLVTDFAAWLRRKLGINKIIK-LPRNLRYWVLVLFLLLSFLSGLLIWEWFNPVGILHRGIIFGMGAGIWLIL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 161 ILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKH-DSDKCTKCYECIRICPEKQVLWMVGK--ESTSVKSGECIRC 237
Cdd:TIGR02163 160 LVFLFDLLFSERGWCGHLCPLGAFYGLIGRKSLIKIAAsDREKCTNCMDCFNVCPEPQVLRMPLKkgGSTLVLSGDCTLC 239

                         250
                  ....*....|....*.
gi 1073173602 238 ARCIEVCNDDALNFNI 253
Cdd:TIGR02163 240 GRCIDVCHEDVLGFTT 255
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
1-251 8.85e-46

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 154.06  E-value: 8.85e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602   1 MKYLIARRIVQLGILVLFsfkatdFILQGNLSSSRLFNTIPLSDPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRV 80
Cdd:COG0348     9 GRFRRLRRLVQLLFLLLF------LLGPWLRWLGDPAVLLDLAERRFYLFGLFWDFYLLALLLIGAALALFLLTLLFGRV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602  81 FCSWVCPVNLITDFAAFVRNKLTLNNKFLILP-----KNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIF--ATS 153
Cdd:COG0348    83 WCGWVCPQGVLTELFSWLERKLGDRRLKLPWSlskilRWLKYIILALWLLLALLTGLTFFGYFSPIGTLLRLLLFgvLGL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 154 SWIFVAFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQVLwmvgkESTSVKSGE 233
Cdd:COG0348   163 WLLLILLAAFLLLALFLRRQWCRYLCPYGAFQGLLSDLSTLRVRYDRGDCIDCGLCVKVCPMGIDI-----RKGEINQSE 237

                         250
                  ....*....|....*...
gi 1073173602 234 CIRCARCIEVCNDDALNF 251
Cdd:COG0348   238 CINCGRCIDACPKDAIRF 255
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 195-249 3.77e-09

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 51.98  E-value: 3.77e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEKqVLWMVGKESTsVKSGECIRCARCIEVCNDDAL 249
Cdd:COG2221     9 PPKIDEEKCIGCGLCVAVCPTG-AISLDDGKLV-IDEEKCIGCGACIRVCPTGAI 61
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 195-244 6.96e-08

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 48.02  E-value: 6.96e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1073173602 195 KIKHDSDKCTKCYECIRICPE-----KQVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:pfam13237   1 KVVIDPDKCIGCGRCTAACPAgltrvGAIVERLEGEAVRIGVWKCIGCGACVEAC 55
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 201-256 7.13e-08

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 48.20  E-value: 7.13e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1073173602 201 DKCTKCYECIRICPeKQVLWMVGKESTS---VKSGECIRCARCIEVCNDDALNFNIFDL 256
Cdd:COG1143     2 DKCIGCGLCVRVCP-VDAITIEDGEPGKvyvIDPDKCIGCGLCVEVCPTGAISMTPFEL 59
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
192-252 8.54e-08

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 48.19  E-value: 8.54e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1073173602 192 ALLKIKHDSDKCTKCYECIRICPEKQVlwMVGKESTSVKSGECIRCARCIEVCNDDALNFN 252
Cdd:COG2768     2 SLGKPYVDEEKCIGCGACVKVCPVGAI--SIEDGKAVIDPEKCIGCGACIEVCPVGAIKIE 60
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 195-251 5.66e-07

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 45.87  E-value: 5.66e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEkQVLWMVGKESTSVKSGECIRCARCIEVCNDDALNF 251
Cdd:COG1149     5 IPVIDEEKCIGCGLCVEVCPE-GAIKLDDGGAPVVDPDLCTGCGACVGVCPTGAITL 60
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 199-248 7.69e-07

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 45.80  E-value: 7.69e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1073173602 199 DSDKCTKCYECIRICPEKqvLWMVGKESTSVKSGECIRCARCIEVCNDDA 248
Cdd:COG4231    20 DEDKCTGCGACVKVCPAD--AIEEGDGKAVIDPDLCIGCGSCVQVCPVDA 67
PRK08348 PRK08348
NADH-plastoquinone oxidoreductase subunit; Provisional
 195-249 9.65e-07

NADH-plastoquinone oxidoreductase subunit; Provisional


Pssm-ID: 181399 [Multi-domain]  Cd Length: 120  Bit Score: 46.75  E-value: 9.65e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEKQVLWMVGKESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:PRK08348   36 KILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGAL 90
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 192-249 1.68e-06

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 45.04  E-value: 1.68e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1073173602 192 ALLKIKHDSDKCTKCYECIRICPEkQVLWMVGKESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:COG1144    21 RVERPVVDEDKCIGCGLCWIVCPD-GAIRVDDGKYYGIDYDYCKGCGICAEVCPVKAI 77
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
195-244 3.21e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 47.71  E-value: 3.21e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEKQVlwMVGKESTSVKSGECIRCARCIEVC 244
Cdd:COG4624    85 SIIRDKEKCKNCYPCVRACPVKAI--KVDDGKAEIDEEKCISCGQCVAVC 132
Fer4_5 pfam12801
4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to ...
 58-101 3.30e-06

4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 432796 [Multi-domain]  Cd Length: 48  Bit Score: 43.32  E-value: 3.30e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1073173602  58 IDLVALIGALIIFFIYgLLLGRVFCSWVCPVNLITDFAAFVRNK 101
Cdd:pfam12801   1 LGPAGLILFLAVLVLT-LLFGRVFCGWLCPFGALQELLAKLLRR 43
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 199-249 3.37e-06

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 43.54  E-value: 3.37e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1073173602 199 DSDKCTKCYECIRICPeKQVLWMV--GKESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:COG1146     6 DTDKCIGCGACVEVCP-VDVLELDeeGKKALVINPEECIGCGACELVCPVGAI 57
PRK13795 PRK13795
hypothetical protein; Provisional
 202-244 1.73e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 45.76  E-value: 1.73e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1073173602 202 KCTKCYECIRICPEKQVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:PRK13795  582 ECVGCGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVC 624
NapF COG1145
Ferredoxin [Energy production and conversion];
195-251 2.04e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 44.71  E-value: 2.04e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEKQVLWMVGKESTSVKSGECIRCARCIEVCNDDALNF 251
Cdd:COG1145   176 KAVIDAEKCIGCGLCVKVCPTGAIRLKDGKPQIVVDPDKCIGCGACVKVCPVGAISL 232
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 174-244 5.23e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 42.00  E-value: 5.23e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1073173602 174 ICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICP-------EKQVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:cd10549    13 ICVKACPTDAIELGPNGAIARGPEIDEDKCVFCGACVEVCPtgaieltPEGKEYVPKEKEAEIDEEKCIGCGLCVKVC 90
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 196-249 1.59e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 40.46  E-value: 1.59e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1073173602 196 IKHDSDKCTKCYECIRICPeKQVLWMVGKESTSVKS----GECIRCARCIEVCNDDAL 249
Cdd:cd10549     1 LKYDPEKCIGCGICVKACP-TDAIELGPNGAIARGPeideDKCVFCGACVEVCPTGAI 57
PRK09898 PRK09898
ferredoxin-like protein;
175-249 2.04e-04

ferredoxin-like protein;


Pssm-ID: 182135 [Multi-domain]  Cd Length: 208  Bit Score: 41.36  E-value: 2.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1073173602 175 CSHFCPLGAFyAFISRFALLKIkhDSDKCTKCYECIRICPekqvlWMVGK-ESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:PRK09898  131 CMNVCPIGAI-TWQQKEGCITV--DHKRCIGCSACTTACP-----WMMATvNTESKKSSKCVLCGECANACPTGAL 198
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
175-248 2.14e-04

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 41.84  E-value: 2.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 175 CSHFCPLGAFYaFISRFAllkiKHDSDKCTKCYECIRICPeKQVLWMV---------------GKESTSVKSGECIRCAR 239
Cdd:PRK07118  147 CVAACPFDAIH-IENGLP----VVDEDKCTGCGACVKACP-RNVIELIpksarvfvacnskdkGKAVKKVCEVGCIGCGK 220


                  ....*....
gi 1073173602 240 CIEVCNDDA 248
Cdd:PRK07118  221 CVKACPAGA 229
ndhI CHL00014
NADH dehydrogenase subunit I
 195-244 3.03e-04

NADH dehydrogenase subunit I


Pssm-ID: 214334 [Multi-domain]  Cd Length: 167  Bit Score: 40.51  E-value: 3.03e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1073173602 195 KIKHDSDKCTKCYECIRICPEKQ--VLWMVGKE-------STSVKSGECIRCARCIEVC 244
Cdd:CHL00014   53 RIHFEFDKCIACEVCVRVCPIDLpvVDWKLETDirkkrllNYSIDFGVCIFCGNCVEYC 111
PorD_KorD TIGR02179
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number ...
 198-249 3.90e-04

2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.


Pssm-ID: 131234 [Multi-domain]  Cd Length: 78  Bit Score: 38.08  E-value: 3.90e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1073173602 198 HDSDKCTKCYECIRICPEKQVLWMVGKEStSVKSGECIRCARCIEVCNDDAL 249
Cdd:TIGR02179  22 VDKEKCIKCKNCWLYCPEGAIQEDEGGFV-GIDYDYCKGCGICANVCPVKAI 72
NapF_like cd10564
NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, ...
 201-249 4.45e-04

NapF, iron-sulfur subunit of periplasmic nitrate reductase; This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319886 [Multi-domain]  Cd Length: 139  Bit Score: 39.53  E-value: 4.45e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1073173602 201 DKCTKCYECIRICPEKQVLWMV-GKESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:cd10564    13 DLCTRCGDCVEACPEGIIVRGDgGFPELDFSRGECTFCGACAEACPEGAL 62
PRK13795 PRK13795
hypothetical protein; Provisional
 174-214 6.15e-04

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 40.75  E-value: 6.15e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1073173602 174 ICSHFCPLGAfyafISRFA-LLKIKHDSDKCTKCYECIRICP 214
Cdd:PRK13795  588 VCVGACPTGA----IRIEEgKRKISVDEEKCIHCGKCTEVCP 625
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 203-244 6.28e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 36.74  E-value: 6.28e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1073173602 203 CTKCYECIRICPEKQVLWM-----VGKESTSVKSGECIRCARCIEVC 244
Cdd:pfam12838   1 CIGCGACVAACPVGAITLDevgekKGTKTVVIDPERCVGCGACVAVC 47
napF TIGR00402
ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of ...
 198-249 6.76e-04

ferredoxin-type protein NapF; The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation. [Energy metabolism, Electron transport]


Pssm-ID: 273060 [Multi-domain]  Cd Length: 101  Bit Score: 38.00  E-value: 6.76e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1073173602 198 HDSDKCTKCYECIRICPEK-QVLWMVGKESTSVKSGECIRCARCIEVCNDDAL 249
Cdd:TIGR00402  31 LFSAVCTRCGECASACENNiLQLGQQGQPTVEFDNAECDFCGKCAEACPTNAF 83
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
174-216 7.59e-04

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 37.40  E-value: 7.59e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1073173602 174 ICSHFCPLGAFYafisrFALLKIKHDSDKCTKCYECIRICPEK 216
Cdd:COG2768    18 ACVKVCPVGAIS-----IEDGKAVIDPEKCIGCGACIEVCPVG 55
Fer4_9 pfam13187
4Fe-4S dicluster domain;
202-249 8.60e-04

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 36.38  E-value: 8.60e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1073173602 202 KCTKCYECIRICPEKQVLWMVGKESTSVK--SGECIRCARCIEVCNDDAL 249
Cdd:pfam13187   1 KCTGCGACVAACPAGAIVPDLVGQTIRGDiaGLACIGCGACVDACPRGAI 50
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 175-249 1.34e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 37.70  E-value: 1.34e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1073173602 175 CSHFCPLGAfyafISRFALLKIKHDSDKCTKCYECIRICPEkQVLWMVGKESTSVKsgeCIRCARCIEVCNDDAL 249
Cdd:cd16372    55 CIDVCPTGA----ITRDANGVVMINKKLCVGCLMCVGFCPE-GAMFKHEDYPEPFK---CIACGICVKACPTGAL 121
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 174-252 1.54e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 37.76  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 174 ICSHFCPLGAFYaFISRFALLKIKH-----DSDKCTKCYECIRICPEkQVLWMVGKESTSVKSGECIRCARCIEVCNDDA 248
Cdd:cd10549    47 ACVEVCPTGAIE-LTPEGKEYVPKEkeaeiDEEKCIGCGLCVKVCPV-DAITLEDELEIVIDKEKCIGCGICAEVCPVNA 124


                  ....
gi 1073173602 249 LNFN 252
Cdd:cd10549   125 IKLV 128
NapF COG1145
Ferredoxin [Energy production and conversion];
174-225 1.81e-03

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 38.94  E-value: 1.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1073173602 174 ICSHFCPLGAFYAFISRFAllkIKHDSDKCTKCYECIRICPEKqVLWMVGKE 225
Cdd:COG1145   189 LCVKVCPTGAIRLKDGKPQ---IVVDPDKCIGCGACVKVCPVG-AISLEPKE 236
Fer4_21 pfam14697
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 199-244 2.15e-03

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 434137 [Multi-domain]  Cd Length: 59  Bit Score: 35.72  E-value: 2.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1073173602 199 DSDKCTKCYECIRICPEK--QVLWMVGKESTSVKSGECIRCARCIEVC 244
Cdd:pfam14697   4 DEDTCIGCGKCYIACPDTshQAIVGDGKRHHTVIEDECTGCNLCVSVC 51
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 175-216 2.48e-03

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 35.80  E-value: 2.48e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1073173602 175 CSHFCPLGAFyafisRFALLKIKHDSDKCTKCYECIRICPEK 216
Cdd:COG2221    23 CVAVCPTGAI-----SLDDGKLVIDEEKCIGCGACIRVCPTG 59
DMSOR_beta_like cd10550
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 173-251 2.93e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319872 [Multi-domain]  Cd Length: 130  Bit Score: 36.79  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 173 AICSHFCPLGAFYAFISRFAllkIKHDSDKCTKCYECIRICPEKqvlwMVGKESTSVKSGECIRCA---RCIEVCNDDAL 249
Cdd:cd10550    55 APCVEACPVGAISRDEETGA---VVVDEDKCIGCGMCVEACPFG----AIRVDPETGKAIKCDLCGgdpACVKVCPTGAL 127


                  ..
gi 1073173602 250 NF 251
Cdd:cd10550   128 EF 129
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 179-251 3.12e-03

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 36.98  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 179 CPLGAfyafISRFALLKIKHDSDKCTKCYECIRICPEKqVLWMVGKESTSVKsgeCIRCA---------RCIEVCNDDAL 249
Cdd:cd04410    62 CPTGA----IYKDEDGIVLIDEDKCIGCGSCVEACPYG-AIVFDPEPGKAVK---CDLCGdrldeglepACVKACPTGAL 133


                  ..
gi 1073173602 250 NF 251
Cdd:cd04410   134 TF 135
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 174-216 3.15e-03

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 35.40  E-value: 3.15e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1073173602 174 ICSHFCPLGAFYafisrFALLKIKHDSDKCTKCYECIRICPEK 216
Cdd:COG4231    29 ACVKVCPADAIE-----EGDGKAVIDPDLCIGCGSCVQVCPVD 66
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
199-249 3.25e-03

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 38.64  E-value: 3.25e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1073173602 199 DSDKC--TKC-YECIRICP----EKQVLWMVGKESTSVKSGE-CIRCARCIEVCNDDAL 249
Cdd:PRK13409    8 DYDRCqpKKCnYECIKYCPvvrtGEETIEIDEDDGKPVISEElCIGCGICVKKCPFDAI 66
DMSOR_beta_like cd16373
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 202-249 4.31e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319895 [Multi-domain]  Cd Length: 154  Bit Score: 36.85  E-value: 4.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1073173602 202 KCTKCYECIRICPEkQVLWMVGKES------TSV---KSGECIRCA-RCIEVCNDDAL 249
Cdd:cd16373    15 LCIRCGLCVEACPT-GVIQPAGLEDgleggrTPYldpREGPCDLCCdACVEVCPTGAL 71
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 187-249 4.91e-03

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 36.24  E-value: 4.91e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1073173602 187 FISRFALLKIKHDSDKCTKCYECIRICPeKQVLWMVGKE---------STSVKSGECIRCARCIEVCNDDAL 249
Cdd:TIGR01971  29 FRGRIVLTRDPNGEEKCIGCTLCAAVCP-ADAIRVVPAEgedgkrrlkFYEINFGRCIFCGLCEEACPTDAI 99
Fer4_5 pfam12801
4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to ...
 155-197 4.94e-03

4Fe-4S binding domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 432796 [Multi-domain]  Cd Length: 48  Bit Score: 34.07  E-value: 4.94e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1073173602 155 WIFVAFILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIK 197
Cdd:pfam12801   4 AGLILFLAVLVLTLLFGRVFCGWLCPFGALQELLAKLLRRKLG 46
Fer4_6 pfam12837
4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to ...
 195-215 5.88e-03

4Fe-4S binding domain; This superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 432822 [Multi-domain]  Cd Length: 24  Bit Score: 33.36  E-value: 5.88e-03
                          10        20
                  ....*....|....*....|.
gi 1073173602 195 KIKHDSDKCTKCYECIRICPE 215
Cdd:pfam12837   1 VVEVDPDKCIGCGRCVVVCPY 21
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 175-214 5.89e-03

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 34.15  E-value: 5.89e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1073173602 175 CSHFCPLGAFY--AFISRFALLKIKHDSDKCTKCYECIRICP 214
Cdd:pfam13237  15 CTAACPAGLTRvgAIVERLEGEAVRIGVWKCIGCGACVEACP 56
psaC CHL00065
photosystem I subunit VII
 201-254 6.37e-03

photosystem I subunit VII


Pssm-ID: 177005 [Multi-domain]  Cd Length: 81  Bit Score: 34.74  E-value: 6.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1073173602 201 DKCTKCYECIRICPeKQVLWMV-------GKESTSVKSGECIRCARCIEVCNDDALNFNIF 254
Cdd:CHL00065    9 DTCIGCTQCVRACP-TDVLEMIpwdgckaKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 174-216 7.99e-03

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 34.34  E-value: 7.99e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1073173602 174 ICSHFCPLGAFYaFISRFALLKIKHDSDKCTKCYECIRICPEK 216
Cdd:COG1143     9 LCVRVCPVDAIT-IEDGEPGKVYVIDPDKCIGCGLCVEVCPTG 50
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
171-249 9.61e-03

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 35.40  E-value: 9.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1073173602 171 PRAICSHFCPLGAfyafISRFALlKIKHDSDKCTKCYECIRICPeKQVLWMVGKESTSVkSGECIRCA------RCIEVC 244
Cdd:COG1142    56 EDAPCAEVCPVGA----ITRDDG-AVVVDEEKCIGCGLCVLACP-FGAITMVGEKSRAV-AVKCDLCGgreggpACVEAC 128


                  ....*
gi 1073173602 245 NDDAL 249
Cdd:COG1142   129 PTGAL 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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