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Conserved domains on  [gi|1032286288|gb|OAP00616|]
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PAM68 [Arabidopsis thaliana]

Protein Classification

PAM68 family protein( domain architecture ID 10571573)

PAM68 family protein is a DUF3464 domain-containing protein; similar to Arabidopsis thaliana chloroplastic protein PAM68 (PHOTOSYNTHESIS AFFECTED MUTANT 68), which is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 107-208 9.47e-54

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


:

Pssm-ID: 432211  Cd Length: 150  Bit Score: 169.01  E-value: 9.47e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032286288 107 RERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLR 186
Cdd:pfam11947  46 AEEMAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEER 125

                          90       100
                  ....*....|....*....|....*
gi 1032286288 187 EGSLLGWNEAKKNWPVF---WQSFW 208
Cdd:pfam11947 126 EGSLLGWEEFKTNWGRMieaWRSAR 150
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 107-208 9.47e-54

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 169.01  E-value: 9.47e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032286288 107 RERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLR 186
Cdd:pfam11947  46 AEEMAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEER 125

                          90       100
                  ....*....|....*....|....*
gi 1032286288 187 EGSLLGWNEAKKNWPVF---WQSFW 208
Cdd:pfam11947 126 EGSLLGWEEFKTNWGRMieaWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 107-200 1.51e-29

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 107.35  E-value: 1.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032286288 107 RERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLR 186
Cdd:COG5778    48 KESMAIPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVLSASWDEER 127

                          90
                  ....*....|....
gi 1032286288 187 EGSLLGWNEAKKNW 200
Cdd:COG5778   128 SGSLLGWQEFKTNF 141
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 107-208 9.47e-54

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 169.01  E-value: 9.47e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032286288 107 RERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLR 186
Cdd:pfam11947  46 AEEMAIPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEER 125

                          90       100
                  ....*....|....*....|....*
gi 1032286288 187 EGSLLGWNEAKKNWPVF---WQSFW 208
Cdd:pfam11947 126 EGSLLGWEEFKTNWGRMieaWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 107-200 1.51e-29

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 107.35  E-value: 1.51e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032286288 107 RERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLR 186
Cdd:COG5778    48 KESMAIPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVLSASWDEER 127

                          90
                  ....*....|....
gi 1032286288 187 EGSLLGWNEAKKNW 200
Cdd:COG5778   128 SGSLLGWQEFKTNF 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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