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Conserved domains on  [gi|1032284970|gb|OAO99297|]
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hypothetical protein AXX17_AT4G30790 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN03188 super family cl33656
kinesin-12 family protein; Provisional
129-802 4.24e-77

kinesin-12 family protein; Provisional


The actual alignment was detected with superfamily member PLN03188:

Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 272.19  E-value: 4.24e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  129 EDDDDSLGDQIRELKEELIRTKSDGYNKAD---ASKSGHFARDSLSQLRvSINKSLLMSCPKRDESEGKEVIVDGEDVLE 205
Cdd:PLN03188   445 QDDVNFLREVIRQLRDELQRVKANGNNPTNpnvAYSTAWNARRSLNLLK-SFGLGPPPSLPHVDEDGDEEMEIDEEAVER 523
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  206 L--------------NKH----IEKLH-------------------------------------------GSYDSVHSSF 224
Cdd:PLN03188   524 LcvqvglqpagaaegNNVdmgrVESIHssdqqsiikqgsedtdvdmeeaiseqeekheitivdcaepvrnTQNSLQIDTL 603
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  225 ASASCYEADSmsgdDEDVCSEDLEKPMHGNHKDvDFVDNDPSQLDNVEFDTTGSGISIRSQL------------PSC--- 289
Cdd:PLN03188   604 DHESSEQPLE----EKNALHSSVSKLNTEESPS-KMVEIRPSCQDSVSESGVSTGVSVADESndsenelvncasPSSlsi 678
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  290 -------VLEEPIFSESPKFKNVQKSVAASTKFSANPRNvSESSNIGDMKVNQISPCMSKKVS--------------GPT 348
Cdd:PLN03188   679 vpvevspVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKD-SEDESKLTPEDAEPSFAKSMKNNsssalstqksksflAPT 757
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  349 DSLAASLQRGLQIIDYHQGSSLSKSSSVSFSFGHMALKPCAEGENLNASVQSFRKDKASEGGLSSILLCLSCRKKVDQEA 428
Cdd:PLN03188   758 EHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDA 837
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  429 -----------------EVTEE-------------AGS--NEKHLKNMCMEQAAKIEELTLLLRKSDDGEDGTEFIKETY 476
Cdd:PLN03188   838 kdaddssnlqlvpvdgsESAEKskkqvpkavekvlAGAirREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTR 917
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  477 ETKQI----------------SEEFG--------------------KTNFEVS----------------EKEALLKEIAD 504
Cdd:PLN03188   918 EDKIIrleslmdgvlskedflEEELAslmhehkllkekyenhpevlRTKIELKrvqdelehyrnfydmgEREVLLEEIQD 997
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  505 LKSKLQ----PTKSTDNLRSSLLLRSIQMRKSIDVSRNG--ENSDD-----LAKEREMWTEMESEWISLTDDLRMDIDNH 573
Cdd:PLN03188   998 LRSQLQyyidSSLPSARKRNSLLKLTYSCEPSQAPPLNTipESTDEspekkLEQERLRWTEAESKWISLAEELRTELDAS 1077
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  574 RSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRHGKrF 653
Cdd:PLN03188  1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESK-F 1156
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  654 AKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFSVVEEEKERLKKQMEQ 733
Cdd:PLN03188  1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1032284970  734 LKSKHKTEIGTMKQYLAESKLPGSAlLQPWYKDEEDEIEQVSEHETgavsfddyEDDQAWRAEFGATYQ 802
Cdd:PLN03188  1237 LKRKHENEISTLNQLVAESRLPKEA-IRPACNDDCMAKYDAGEPLS--------EGDQQWREEFEPFYK 1296
 
Name Accession Description Interval E-value
PLN03188 PLN03188
kinesin-12 family protein; Provisional
129-802 4.24e-77

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 272.19  E-value: 4.24e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  129 EDDDDSLGDQIRELKEELIRTKSDGYNKAD---ASKSGHFARDSLSQLRvSINKSLLMSCPKRDESEGKEVIVDGEDVLE 205
Cdd:PLN03188   445 QDDVNFLREVIRQLRDELQRVKANGNNPTNpnvAYSTAWNARRSLNLLK-SFGLGPPPSLPHVDEDGDEEMEIDEEAVER 523
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  206 L--------------NKH----IEKLH-------------------------------------------GSYDSVHSSF 224
Cdd:PLN03188   524 LcvqvglqpagaaegNNVdmgrVESIHssdqqsiikqgsedtdvdmeeaiseqeekheitivdcaepvrnTQNSLQIDTL 603
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  225 ASASCYEADSmsgdDEDVCSEDLEKPMHGNHKDvDFVDNDPSQLDNVEFDTTGSGISIRSQL------------PSC--- 289
Cdd:PLN03188   604 DHESSEQPLE----EKNALHSSVSKLNTEESPS-KMVEIRPSCQDSVSESGVSTGVSVADESndsenelvncasPSSlsi 678
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  290 -------VLEEPIFSESPKFKNVQKSVAASTKFSANPRNvSESSNIGDMKVNQISPCMSKKVS--------------GPT 348
Cdd:PLN03188   679 vpvevspVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKD-SEDESKLTPEDAEPSFAKSMKNNsssalstqksksflAPT 757
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  349 DSLAASLQRGLQIIDYHQGSSLSKSSSVSFSFGHMALKPCAEGENLNASVQSFRKDKASEGGLSSILLCLSCRKKVDQEA 428
Cdd:PLN03188   758 EHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDA 837
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  429 -----------------EVTEE-------------AGS--NEKHLKNMCMEQAAKIEELTLLLRKSDDGEDGTEFIKETY 476
Cdd:PLN03188   838 kdaddssnlqlvpvdgsESAEKskkqvpkavekvlAGAirREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTR 917
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  477 ETKQI----------------SEEFG--------------------KTNFEVS----------------EKEALLKEIAD 504
Cdd:PLN03188   918 EDKIIrleslmdgvlskedflEEELAslmhehkllkekyenhpevlRTKIELKrvqdelehyrnfydmgEREVLLEEIQD 997
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  505 LKSKLQ----PTKSTDNLRSSLLLRSIQMRKSIDVSRNG--ENSDD-----LAKEREMWTEMESEWISLTDDLRMDIDNH 573
Cdd:PLN03188   998 LRSQLQyyidSSLPSARKRNSLLKLTYSCEPSQAPPLNTipESTDEspekkLEQERLRWTEAESKWISLAEELRTELDAS 1077
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  574 RSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRHGKrF 653
Cdd:PLN03188  1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESK-F 1156
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  654 AKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFSVVEEEKERLKKQMEQ 733
Cdd:PLN03188  1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1032284970  734 LKSKHKTEIGTMKQYLAESKLPGSAlLQPWYKDEEDEIEQVSEHETgavsfddyEDDQAWRAEFGATYQ 802
Cdd:PLN03188  1237 LKRKHENEISTLNQLVAESRLPKEA-IRPACNDDCMAKYDAGEPLS--------EGDQQWREEFEPFYK 1296
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
564-737 4.66e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.24  E-value: 4.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 564 DDLRMDIDNHRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAaska 643
Cdd:COG1196   235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER---- 310
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 644 amngrhgKRFAKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGEllvRLRESEQALQVSEERFSVVEEE 723
Cdd:COG1196   311 -------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEAELAEAEEE 380
                         170
                  ....*....|....
gi 1032284970 724 KERLKKQMEQLKSK 737
Cdd:COG1196   381 LEELAEELLEALRA 394
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
493-747 5.32e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 5.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  493 SEKEALLKEIADLKSKLQPTKSTDNLRSSLLLRSIQMRKSIDVSRNgENSDDLAKEREMWTEMESEWisltDDLRMDIDN 572
Cdd:TIGR02168  719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE-ELEERLEEAEEELAEAEAEI----EELEAQIEQ 793
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  573 HRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRhgkR 652
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE---E 870
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  653 FAKAFsDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFsvveeeKERLKKQME 732
Cdd:TIGR02168  871 LESEL-EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL------EVRIDNLQE 943
                          250
                   ....*....|....*
gi 1032284970  733 QLKSKHKTEIGTMKQ 747
Cdd:TIGR02168  944 RLSEEYSLTLEEAEA 958
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
393-762 5.38e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 43.57  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  393 NLNASVQsfRKDKASEGGLSSILlclSCRKKVDQEAEVTEEAGSNEKHLKNMcmeqAAKIEELTLLLRKSDDGedgTEFI 472
Cdd:pfam15921  500 DLTASLQ--EKERAIEATNAEIT---KLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDKV---IEIL 567
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  473 KETYET-KQISEEFGKTNFEVS-EKEALLKEIADLKSKLQPTKSTDNLRSSLL------LRSIQMRKSIDVSRNGEN--- 541
Cdd:pfam15921  568 RQQIENmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKKDAKIrelearVSDLELEKVKLVNAGSERlra 647
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  542 SDDLAKER-EMWTEME---SEWISLTDDLRMDIDNHRSRAENLEfelkqekLATEELNDALTRAvlghsrfieqYTELQE 617
Cdd:pfam15921  648 VKDIKQERdQLLNEVKtsrNELNSLSEDYEVLKRNFRNKSEEME-------TTTNKLKMQLKSA----------QSELEQ 710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  618 TYNEL-----GEKHSVMMAGITDVKKAASKAAMNGRHGK-RFakafsdeLSAIRAEKEKERELLKKENKNLRTQLRDTA- 690
Cdd:pfam15921  711 TRNTLksmegSDGHAMKVAMGMQKQITAKRGQIDALQSKiQF-------LEEAMTNANKEKHFLKEEKNKLSQELSTVAt 783
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  691 EAVQAAGELLV------RLRES----EQALQVSEERFSVVEEEKERLKKQMEQLKSKHKTEIGTMK--QYLAESKLPgSA 758
Cdd:pfam15921  784 EKNKMAGELEVlrsqerRLKEKvanmEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQgpGYTSNSSMK-PR 862

                   ....
gi 1032284970  759 LLQP 762
Cdd:pfam15921  863 LLQP 866
 
Name Accession Description Interval E-value
PLN03188 PLN03188
kinesin-12 family protein; Provisional
129-802 4.24e-77

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 272.19  E-value: 4.24e-77
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  129 EDDDDSLGDQIRELKEELIRTKSDGYNKAD---ASKSGHFARDSLSQLRvSINKSLLMSCPKRDESEGKEVIVDGEDVLE 205
Cdd:PLN03188   445 QDDVNFLREVIRQLRDELQRVKANGNNPTNpnvAYSTAWNARRSLNLLK-SFGLGPPPSLPHVDEDGDEEMEIDEEAVER 523
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  206 L--------------NKH----IEKLH-------------------------------------------GSYDSVHSSF 224
Cdd:PLN03188   524 LcvqvglqpagaaegNNVdmgrVESIHssdqqsiikqgsedtdvdmeeaiseqeekheitivdcaepvrnTQNSLQIDTL 603
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  225 ASASCYEADSmsgdDEDVCSEDLEKPMHGNHKDvDFVDNDPSQLDNVEFDTTGSGISIRSQL------------PSC--- 289
Cdd:PLN03188   604 DHESSEQPLE----EKNALHSSVSKLNTEESPS-KMVEIRPSCQDSVSESGVSTGVSVADESndsenelvncasPSSlsi 678
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  290 -------VLEEPIFSESPKFKNVQKSVAASTKFSANPRNvSESSNIGDMKVNQISPCMSKKVS--------------GPT 348
Cdd:PLN03188   679 vpvevspVLKSPTLSVSPRIRNSRKSLRTSSMLTASQKD-SEDESKLTPEDAEPSFAKSMKNNsssalstqksksflAPT 757
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  349 DSLAASLQRGLQIIDYHQGSSLSKSSSVSFSFGHMALKPCAEGENLNASVQSFRKDKASEGGLSSILLCLSCRKKVDQEA 428
Cdd:PLN03188   758 EHLAASLHRGLEIIDSHRQSSALRRSSFRFSFKPADSKPITLVSKADVGVQTLPQADEISEENSKEFLCSNCKCRTQLDA 837
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  429 -----------------EVTEE-------------AGS--NEKHLKNMCMEQAAKIEELTLLLRKSDDGEDGTEFIKETY 476
Cdd:PLN03188   838 kdaddssnlqlvpvdgsESAEKskkqvpkavekvlAGAirREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTR 917
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  477 ETKQI----------------SEEFG--------------------KTNFEVS----------------EKEALLKEIAD 504
Cdd:PLN03188   918 EDKIIrleslmdgvlskedflEEELAslmhehkllkekyenhpevlRTKIELKrvqdelehyrnfydmgEREVLLEEIQD 997
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  505 LKSKLQ----PTKSTDNLRSSLLLRSIQMRKSIDVSRNG--ENSDD-----LAKEREMWTEMESEWISLTDDLRMDIDNH 573
Cdd:PLN03188   998 LRSQLQyyidSSLPSARKRNSLLKLTYSCEPSQAPPLNTipESTDEspekkLEQERLRWTEAESKWISLAEELRTELDAS 1077
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  574 RSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRHGKrF 653
Cdd:PLN03188  1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESK-F 1156
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  654 AKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFSVVEEEKERLKKQMEQ 733
Cdd:PLN03188  1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDK 1236
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1032284970  734 LKSKHKTEIGTMKQYLAESKLPGSAlLQPWYKDEEDEIEQVSEHETgavsfddyEDDQAWRAEFGATYQ 802
Cdd:PLN03188  1237 LKRKHENEISTLNQLVAESRLPKEA-IRPACNDDCMAKYDAGEPLS--------EGDQQWREEFEPFYK 1296
PTZ00121 PTZ00121
MAEBL; Provisional
422-796 2.73e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  422 KKVDQEAEVTEEAGSNEKHLKNMCMEQAAKIEELTLLL-----RKSDDGEDGTEFIKETYETKQISEEFGKTNFEVSEKE 496
Cdd:PTZ00121  1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKkeeakKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  497 ALLKEIADLKSKLQPTKSTDNL--RSSLLLRSIQMRKSIDVSRNGENSDDLAKEREMWTEM--ESEWISLTDDLRMDIDN 572
Cdd:PTZ00121  1415 AAKKKADEAKKKAEEKKKADEAkkKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAkkKAEEAKKADEAKKKAEE 1494
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  573 HRSRAENLEfELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKaamngRHGKR 652
Cdd:PTZ00121  1495 AKKKADEAK-KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK-----KKAEE 1568
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  653 FAKAFSDELSAIRaekeKERELLKKENKNLRTQLRDTAEAVQAAGEllvRLRESEQALQVSEErfsVVEEEKERlkKQME 732
Cdd:PTZ00121  1569 AKKAEEDKNMALR----KAEEAKKAEEARIEEVMKLYEEEKKMKAE---EAKKAEEAKIKAEE---LKKAEEEK--KKVE 1636
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1032284970  733 QLKSKHKTEIGTMKQYLAESKLPGSALLQPWYKDEED-----EIEQVSEHETGAVSFDDYEDDQAWRAE 796
Cdd:PTZ00121  1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkaeEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
564-737 4.66e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.24  E-value: 4.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 564 DDLRMDIDNHRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAaska 643
Cdd:COG1196   235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER---- 310
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 644 amngrhgKRFAKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGEllvRLRESEQALQVSEERFSVVEEE 723
Cdd:COG1196   311 -------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA---ELAEAEEALLEAEAELAEAEEE 380
                         170
                  ....*....|....
gi 1032284970 724 KERLKKQMEQLKSK 737
Cdd:COG1196   381 LEELAEELLEALRA 394
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
493-747 5.32e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 5.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  493 SEKEALLKEIADLKSKLQPTKSTDNLRSSLLLRSIQMRKSIDVSRNgENSDDLAKEREMWTEMESEWisltDDLRMDIDN 572
Cdd:TIGR02168  719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE-ELEERLEEAEEELAEAEAEI----EELEAQIEQ 793
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  573 HRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRhgkR 652
Cdd:TIGR02168  794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE---E 870
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  653 FAKAFsDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFsvveeeKERLKKQME 732
Cdd:TIGR02168  871 LESEL-EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL------EVRIDNLQE 943
                          250
                   ....*....|....*
gi 1032284970  733 QLKSKHKTEIGTMKQ 747
Cdd:TIGR02168  944 RLSEEYSLTLEEAEA 958
PTZ00121 PTZ00121
MAEBL; Provisional
421-791 1.45e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  421 RKKVDQEAEVTEEAGSNEKHLKNMcmEQAAKIEELTlllRKSDDGEDGTEFIKETYETKQISEEFGKTNFEVSEKEALLK 500
Cdd:PTZ00121  1456 AKKAEEAKKKAEEAKKADEAKKKA--EEAKKADEAK---KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  501 E---IADLKSKLQPTKSTDNLRSSLLLRSIQMRKSIDVSRNGENSDDLAKER-EMWTEMESEWISltDDLRMDIDNHRSR 576
Cdd:PTZ00121  1531 EeakKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaEEAKKAEEARIE--EVMKLYEEEKKMK 1608
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  577 AENLEFElKQEKLATEELNDAltravlghsrfieqyTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRHGKRfaKA 656
Cdd:PTZ00121  1609 AEEAKKA-EEAKIKAEELKKA---------------EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK--KA 1670
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  657 FSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRlrESEQALQVSEERFSVVEE---EKERLKKQMEQ 733
Cdd:PTZ00121  1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK--KAEELKKAEEENKIKAEEakkEAEEDKKKAEE 1748
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1032284970  734 LKsKHKTEIGTMKQYLAESKLPGSALLQPWYK------DEEDEIEQVSEHETGAVSFDDYEDDQ 791
Cdd:PTZ00121  1749 AK-KDEEEKKKIAHLKKEEEKKAEEIRKEKEAvieeelDEEDEKRRMEVDKKIKDIFDNFANII 1811
BMS1 COG5192
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ...
390-740 3.28e-04

GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227519 [Multi-domain]  Cd Length: 1077  Bit Score: 44.35  E-value: 3.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  390 EGENLNASVQSFRKDKASEGGLSSILLCLSCRKKVDQEAEVTEEAG--SNEKHLKNMCMEQAAKIEELTL---LLRKSDD 464
Cdd:COG5192    361 EGEKMKMQLQEIEQDPGVDGVGLQLFSNSDAIDTVDRESSEIDNVGrkTRRQPTGKAIAEETSREDELSFddsDVSTSDE 440
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  465 GEDGTEFIKE---TYETKQISEEFG-KTNFEVSEKEALLKEIADLKSKLQPTKSTDNLRSSLLLRSIQMRKSIDVSRNGE 540
Cdd:COG5192    441 NEDVDFTGKKgaiNNEDESDNEEVAfDSDSQFDESEGNLRWKEGLASKLAYSQSGKRGRNIQKIFYDESLSPEECIEEYK 520
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  541 NSDDLAKEREMWTEMESEwisltDDLRMDIDNHRSRAENLEFELKQEklaTEELNDALTRAVLGHSRFI-EQYTELQETY 619
Cdd:COG5192    521 GESAKSSESDLVVQDEPE-----DFFDVSKVANESISSNHEKLMESE---FEELKKKWSSLAQLKSRFQkDATLDSIEGE 592
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  620 NELGEKHSVMMAGITDVKKAASKAAMNGRHGKRFAKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAvqaagel 699
Cdd:COG5192    593 EELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDP------- 665
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1032284970  700 lvrlreseqalqvSEERFSVVEEEKERLKKQMEQLKSKHKT 740
Cdd:COG5192    666 -------------EKKDVDWYTEEKRKIEEQLKINRSEFET 693
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
570-751 3.32e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.16  E-value: 3.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 570 IDNHRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSvmmagitdvkkAASKAAMNGRH 649
Cdd:COG1196   234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-----------ELLAELARLEQ 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 650 GKRFAKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGEllvRLRESEQALQVSEERFSVVEEEKERLKK 729
Cdd:COG1196   303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEAEAELAEAEE 379
                         170       180
                  ....*....|....*....|..
gi 1032284970 730 QMEQLKSKHKTEIGTMKQYLAE 751
Cdd:COG1196   380 ELEELAEELLEALRAAAELAAQ 401
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
573-738 4.80e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.60  E-value: 4.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 573 HRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNgrhgKR 652
Cdd:COG4717   300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA----AL 375
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 653 FAKAFSDELSAIR--AEKEKERELLKKENKNLRTQLRDTAEAVQAA------GELLVRLRESEQALQVSEERFSVVEEEK 724
Cdd:COG4717   376 LAEAGVEDEEELRaaLEQAEEYQELKEELEELEEQLEELLGELEELlealdeEELEEELEELEEELEELEEELEELREEL 455
                         170
                  ....*....|....
gi 1032284970 725 ERLKKQMEQLKSKH 738
Cdd:COG4717   456 AELEAELEQLEEDG 469
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
393-762 5.38e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 43.57  E-value: 5.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  393 NLNASVQsfRKDKASEGGLSSILlclSCRKKVDQEAEVTEEAGSNEKHLKNMcmeqAAKIEELTLLLRKSDDGedgTEFI 472
Cdd:pfam15921  500 DLTASLQ--EKERAIEATNAEIT---KLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAEKDKV---IEIL 567
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  473 KETYET-KQISEEFGKTNFEVS-EKEALLKEIADLKSKLQPTKSTDNLRSSLL------LRSIQMRKSIDVSRNGEN--- 541
Cdd:pfam15921  568 RQQIENmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKKDAKIrelearVSDLELEKVKLVNAGSERlra 647
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  542 SDDLAKER-EMWTEME---SEWISLTDDLRMDIDNHRSRAENLEfelkqekLATEELNDALTRAvlghsrfieqYTELQE 617
Cdd:pfam15921  648 VKDIKQERdQLLNEVKtsrNELNSLSEDYEVLKRNFRNKSEEME-------TTTNKLKMQLKSA----------QSELEQ 710
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  618 TYNEL-----GEKHSVMMAGITDVKKAASKAAMNGRHGK-RFakafsdeLSAIRAEKEKERELLKKENKNLRTQLRDTA- 690
Cdd:pfam15921  711 TRNTLksmegSDGHAMKVAMGMQKQITAKRGQIDALQSKiQF-------LEEAMTNANKEKHFLKEEKNKLSQELSTVAt 783
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  691 EAVQAAGELLV------RLRES----EQALQVSEERFSVVEEEKERLKKQMEQLKSKHKTEIGTMK--QYLAESKLPgSA 758
Cdd:pfam15921  784 EKNKMAGELEVlrsqerRLKEKvanmEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQgpGYTSNSSMK-PR 862

                   ....
gi 1032284970  759 LLQP 762
Cdd:pfam15921  863 LLQP 866
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
537-738 9.68e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.83  E-value: 9.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 537 RNGENSDDLAKEREMWTEMESEWISLTDDLRmDIDNHRSRAENLEFELKQEKLATEELNDALtravlghsRFIEQYTELQ 616
Cdd:COG4717    68 LNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLL--------PLYQELEALE 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 617 ETYNELGEKhsvmmagitdvkkaaskaamngrhgkrfAKAFSDELSAIRaEKEKERELLKKENKNLRTQL-----RDTAE 691
Cdd:COG4717   139 AELAELPER----------------------------LEELEERLEELR-ELEEELEELEAELAELQEELeelleQLSLA 189
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1032284970 692 AVQAAGELLVRLRESEQALQVSEERFSVVEEEKERLKKQMEQLKSKH 738
Cdd:COG4717   190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
PTZ00121 PTZ00121
MAEBL; Provisional
422-737 2.18e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  422 KKVDQEAEVTEEAGSNEKHLKnmcMEQAAKIEE--LTLLLRKSDDGEDgTEFIKETYETKQISEefGKTNFEVSEKEALL 499
Cdd:PTZ00121  1121 KKKAEDARKAEEARKAEDARK---AEEARKAEDakRVEIARKAEDARK-AEEARKAEDAKKAEA--ARKAEEVRKAEELR 1194
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  500 KeiADLKSKLQPTKSTDNLRSSLLLRSIQMRKSIDVSRNGENSDDLAKE-REMWTEMESEWISLTDDLRMDIDNHRSRAE 578
Cdd:PTZ00121  1195 K--AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEaKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  579 NLEfelkqEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVmmagiTDVKKAASKAAMNGRHGKRFAKAFS 658
Cdd:PTZ00121  1273 KAE-----EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA-----DEAKKKAEEAKKKADAAKKKAEEAK 1342
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  659 DELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVR---LRESEQALQVSEERFSVVEE--EKERLKKQMEQ 733
Cdd:PTZ00121  1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKaeeKKKADEAKKKAEEDKKKADElkKAAAAKKKADE 1422

                   ....
gi 1032284970  734 LKSK 737
Cdd:PTZ00121  1423 AKKK 1426
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
570-751 2.31e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 570 IDNHRSRAENLEFELKQEKLATEELNDALTRAVLGHSRFIEQYTELQETYNELGEKHSVMMAGITDVKKAASKAAMNGRH 649
Cdd:COG1196   269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 650 GKRFAKAFSDELSAIRAEKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQVSEERFSVVEEEKERLKK 729
Cdd:COG1196   349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
                         170       180
                  ....*....|....*....|..
gi 1032284970 730 QMEQLKSKHKTEIGTMKQYLAE 751
Cdd:COG1196   429 ALAELEEEEEEEEEALEEAAEE 450
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
480-722 4.18e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.77  E-value: 4.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 480 QISEEFGKTNFEVSEKEA------LLKEIADLKSKLQptKSTDNL---RSSLLLRSIQMRKSIDVSRNGENSDDLAKERE 550
Cdd:COG3206   156 ALAEAYLEQNLELRREEArkalefLEEQLPELRKELE--EAEAALeefRQKNGLVDLSEEAKLLLQQLSELESQLAEARA 233
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 551 MWTEMESEWISLTDDLRMDIDNHRSRAENLEFELKQEKLATEELndaltravlghsrfieQYTELQETYnelGEKHSVMM 630
Cdd:COG3206   234 ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------------ELAELSARY---TPNHPDVI 294
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 631 AgiTDVKKAASKAAMNGRHGKRFAKAFSD------ELSAIRAEKEKERELLKKENKNLRTQL---RDTAEAVQAAGELLV 701
Cdd:COG3206   295 A--LRAQIAALRAQLQQEAQRILASLEAElealqaREASLQAQLAQLEARLAELPELEAELRrleREVEVARELYESLLQ 372
                         250       260
                  ....*....|....*....|.
gi 1032284970 702 RLRESEQALQVSEERFSVVEE 722
Cdd:COG3206   373 RLEEARLAEALTVGNVRVIDP 393
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
568-778 4.87e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 4.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  568 MDIDNHRSRAENLEFELKQ-----EKLATE--ELNDALTRAVLGHSRFIEQYTELQETYNELGEKHS--VMMAGITDVKK 638
Cdd:TIGR02168  232 LRLEELREELEELQEELKEaeeelEELTAElqELEEKLEELRLEVSELEEEIEELQKELYALANEISrlEQQKQILRERL 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  639 A---ASKAAMNGRHGKRFAKafSDELSAIRAEKEKERELLKKENKNLRTQLrDTAEAVQAAGELLVRLREsEQALQVSEE 715
Cdd:TIGR02168  312 AnleRQLEELEAQLEELESK--LDELAEELAELEEKLEELKEELESLEAEL-EELEAELEELESRLEELE-EQLETLRSK 387
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1032284970  716 RFSVVEEEK------ERLKKQMEQLKSKHKTEIGTMKQYLAESKLPGSALLQPWYKDEEDEIEQVSEHE 778
Cdd:TIGR02168  388 VAQLELQIAslnneiERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
651-737 5.76e-03

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 40.13  E-value: 5.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970 651 KRFAKAFSDELSAIRAEKEKERELLKKENKN-LRTQLRDTAEAvqAAGELLVRLRESEQALQVSEERF--SVVEEEKERL 727
Cdd:pfam09731 334 ARLEEVRAADEAQLRLEFEREREEIRESYEEkLRTELERQAEA--HEEHLKDVLVEQEIELQREFLQDikEKVEEERAGR 411
                          90
                  ....*....|
gi 1032284970 728 KKQMEQLKSK 737
Cdd:pfam09731 412 LLKLNELLAN 421
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
648-740 7.59e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.90  E-value: 7.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1032284970  648 RHGKRFAKAFS--DELSAIRA-----EKEKERELLKKENKNLRTQLRDTAEAVQAAGELLVRLRESEQALQvsEERFSVV 720
Cdd:COG4913    259 ELAERYAAARErlAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGNG 336
                           90       100
                   ....*....|....*....|
gi 1032284970  721 EEEKERLKKQMEQLKSKHKT 740
Cdd:COG4913    337 GDRLEQLEREIERLERELEE 356
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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