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Conserved domains on  [gi|1032279914|gb|OAO94242|]
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hypothetical protein AXX17_AT5G55870 [Arabidopsis thaliana]

Protein Classification

eS30 family ribosomal protein( domain architecture ID 10520706)

eS30 family ribosomal protein is synthesized as a C-terminal extension protein (CEP) of a ubiquitin-like protein

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803|29401259

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-59 1.88e-18

Ribosomal protein S30;


:

Pssm-ID: 398432  Cd Length: 58  Bit Score: 70.37  E-value: 1.88e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1032279914  3 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNS 59
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNS 57
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-59 1.88e-18

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 70.37  E-value: 1.88e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1032279914  3 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNS 59
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-54 1.32e-08

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 45.92  E-value: 1.32e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1032279914  1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKK 54
Cdd:PTZ00467   1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEK 54
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-59 1.88e-18

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 70.37  E-value: 1.88e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1032279914  3 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNS 59
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-54 1.32e-08

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 45.92  E-value: 1.32e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1032279914  1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKK 54
Cdd:PTZ00467   1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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