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Conserved domains on  [gi|1026766463|gb|OAE26952|]
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hypothetical protein AXG93_2277s1050 [Marchantia polymorpha subsp. ruderalis]

Protein Classification

G-type lectin S-receptor-like serine/threonine-protein kinase family protein( domain architecture ID 1903669)

G-type lectin S-receptor-like serine/threonine-protein kinase is involved in the abiotic stress response, allowing the plant to adapt to continuously changing environmental factors; contains a highly conserved serine/threonine protein kinase catalytic domain and a G-type lectin region

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
B_lectin super family cl42953
Bulb-type mannose-specific lectin;
278-348 3.87e-08

Bulb-type mannose-specific lectin;


The actual alignment was detected with superfamily member smart00108:

Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 51.16  E-value: 3.87e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1026766463  278 IWRAATrgaNVLVDERGTFTFSHDGALELKDSHNKLVWTTNTQGKASDLNFNL-DSGELRLYNVGRSIVWSS 348
Cdd:smart00108  43 VWVANR---DNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANGNYVLVLlDDGNLVIYDSDGNFLWQS 111
B_lectin super family cl42953
Bulb-type mannose-specific lectin;
82-190 1.12e-03

Bulb-type mannose-specific lectin;


The actual alignment was detected with superfamily member smart00108:

Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 38.45  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026766463   82 YALGFETATSGSVYLSIySYNprdKSAGPFIWRAATSSGVHVqvpaASSLKFSKSGNIELIDTKGVVQW-TPMAAGLGVT 160
Cdd:smart00108  17 FELGFFTLIMQNDYNLI-LYK---SSSRTVVWVANRDNPVSD----SCTLTLQSDGNLVLYDGDGRVVWsSNTTGANGNY 88

                           90       100       110
                   ....*....|....*....|....*....|
gi 1026766463  161 DFQFnfrkQSNaiaGNMLLYNQDRQVVWQS 190
Cdd:smart00108  89 VLVL----LDD---GNLVIYDSDGNFLWQS 111
 
Name Accession Description Interval E-value
B_lectin smart00108
Bulb-type mannose-specific lectin;
278-348 3.87e-08

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 51.16  E-value: 3.87e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1026766463  278 IWRAATrgaNVLVDERGTFTFSHDGALELKDSHNKLVWTTNTQGKASDLNFNL-DSGELRLYNVGRSIVWSS 348
Cdd:smart00108  43 VWVANR---DNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANGNYVLVLlDDGNLVIYDSDGNFLWQS 111
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
 278-348 2.93e-07

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 48.46  E-value: 2.93e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1026766463 278 IWRAATrgaNVLVDERGTFTFSHDGALELKDSHNKLVWTTNTQGKASDLNFNL-DSGELRLYNVGRSIVWSS 348
Cdd:cd00028    44 VWVANR---DNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNGNYVLVLlDDGNLVLYDSDGNFLWQS 112
B_lectin smart00108
Bulb-type mannose-specific lectin;
82-190 1.12e-03

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 38.45  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026766463   82 YALGFETATSGSVYLSIySYNprdKSAGPFIWRAATSSGVHVqvpaASSLKFSKSGNIELIDTKGVVQW-TPMAAGLGVT 160
Cdd:smart00108  17 FELGFFTLIMQNDYNLI-LYK---SSSRTVVWVANRDNPVSD----SCTLTLQSDGNLVLYDGDGRVVWsSNTTGANGNY 88

                           90       100       110
                   ....*....|....*....|....*....|
gi 1026766463  161 DFQFnfrkQSNaiaGNMLLYNQDRQVVWQS 190
Cdd:smart00108  89 VLVL----LDD---GNLVIYDSDGNFLWQS 111
 
Name Accession Description Interval E-value
B_lectin smart00108
Bulb-type mannose-specific lectin;
278-348 3.87e-08

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 51.16  E-value: 3.87e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1026766463  278 IWRAATrgaNVLVDERGTFTFSHDGALELKDSHNKLVWTTNTQGKASDLNFNL-DSGELRLYNVGRSIVWSS 348
Cdd:smart00108  43 VWVANR---DNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANGNYVLVLlDDGNLVIYDSDGNFLWQS 111
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
 278-348 2.93e-07

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 48.46  E-value: 2.93e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1026766463 278 IWRAATrgaNVLVDERGTFTFSHDGALELKDSHNKLVWTTNTQGKASDLNFNL-DSGELRLYNVGRSIVWSS 348
Cdd:cd00028    44 VWVANR---DNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNGNYVLVLlDDGNLVLYDSDGNFLWQS 112
B_lectin smart00108
Bulb-type mannose-specific lectin;
82-190 1.12e-03

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 38.45  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1026766463   82 YALGFETATSGSVYLSIySYNprdKSAGPFIWRAATSSGVHVqvpaASSLKFSKSGNIELIDTKGVVQW-TPMAAGLGVT 160
Cdd:smart00108  17 FELGFFTLIMQNDYNLI-LYK---SSSRTVVWVANRDNPVSD----SCTLTLQSDGNLVLYDGDGRVVWsSNTTGANGNY 88

                           90       100       110
                   ....*....|....*....|....*....|
gi 1026766463  161 DFQFnfrkQSNaiaGNMLLYNQDRQVVWQS 190
Cdd:smart00108  89 VLVL----LDD---GNLVIYDSDGNFLWQS 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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