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Conserved domains on  [gi|6647823|sp|O66475|]
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RecName: Full=Single-stranded DNA-binding protein; Short=SSB

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 10015717)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-147 8.13e-55

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


:

Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 169.52  E-value: 8.13e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823      1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     81 QEKWE-KEGKKFSKVRIIAENVRLIN----RPKGAELQAEEEEEVP-PIEEEIEKLGKE--EEKPFT-------DEEDEI 145
Cdd:TIGR00621  83 TRKWEdQNGQKRSKTEIIADNVQLLDllgaRAQGGEFSGGGGSGNRpQGGQEQSATGKDpaQSAPQSgsadpidGDDDEI 162


                  ..
gi 6647823    146 PF 147
Cdd:TIGR00621 163 PF 164
 
Name Accession Description Interval E-value
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-147 8.13e-55

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 169.52  E-value: 8.13e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823      1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     81 QEKWE-KEGKKFSKVRIIAENVRLIN----RPKGAELQAEEEEEVP-PIEEEIEKLGKE--EEKPFT-------DEEDEI 145
Cdd:TIGR00621  83 TRKWEdQNGQKRSKTEIIADNVQLLDllgaRAQGGEFSGGGGSGNRpQGGQEQSATGKDpaQSAPQSgsadpidGDDDEI 162


                  ..
gi 6647823    146 PF 147
Cdd:TIGR00621 163 PF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-111 2.05e-43

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 138.82  E-value: 2.05e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823    2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                        90       100       110
                ....*....|....*....|....*....|.
gi 6647823   82 EKWE-KEGKKFSKVRIIAENVRLINRPKGAE 111
Cdd:COG0629  81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGG 111
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-104 6.39e-38

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 124.66  E-value: 6.39e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823      2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQnGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDR-GEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90       100
                  ....*....|....*....|....
gi 6647823     82 EKWE-KEGKKFSKVRIIAENVRLI 104
Cdd:pfam00436  80 RKYEdQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-104 8.87e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 113.86  E-value: 8.87e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823    5 VFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNgEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQEKW 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD-EEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                        90       100
                ....*....|....*....|.
gi 6647823   85 E-KEGKKFSKVRIIAENVRLI 104
Cdd:cd04496  80 EdKDGQKRYGTEVVADRIEFL 100
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-104 1.22e-27

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 101.08  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80

                         90       100
                 ....*....|....*....|....*
gi 6647823    81 QEKW-EKEGKKFSKVRIIAENVRLI 104
Cdd:PRK08486  81 FESWmDQNGQKRSKHTITAESMQML 105
 
Name Accession Description Interval E-value
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 1-147 8.13e-55

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 169.52  E-value: 8.13e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823      1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:TIGR00621   3 MVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     81 QEKWE-KEGKKFSKVRIIAENVRLIN----RPKGAELQAEEEEEVP-PIEEEIEKLGKE--EEKPFT-------DEEDEI 145
Cdd:TIGR00621  83 TRKWEdQNGQKRSKTEIIADNVQLLDllgaRAQGGEFSGGGGSGNRpQGGQEQSATGKDpaQSAPQSgsadpidGDDDEI 162


                  ..
gi 6647823    146 PF 147
Cdd:TIGR00621 163 PF 164
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
2-111 2.05e-43

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 138.82  E-value: 2.05e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823    2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:COG0629   1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKDETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                        90       100       110
                ....*....|....*....|....*....|.
gi 6647823   82 EKWE-KEGKKFSKVRIIAENVRLINRPKGAE 111
Cdd:COG0629  81 RSWEdKDGQKRYTTEVVADEIQFLGSRPSGG 111
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 2-104 6.39e-38

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 124.66  E-value: 6.39e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823      2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQnGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDR-GEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQT 79

                          90       100
                  ....*....|....*....|....
gi 6647823     82 EKWE-KEGKKFSKVRIIAENVRLI 104
Cdd:pfam00436  80 RKYEdQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 5-104 8.87e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 113.86  E-value: 8.87e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823    5 VFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNgEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQEKW 84
Cdd:cd04496   1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD-EEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSW 79

                        90       100
                ....*....|....*....|.
gi 6647823   85 E-KEGKKFSKVRIIAENVRLI 104
Cdd:cd04496  80 EdKDGQKRYGTEVVADRIEFL 100
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 1-104 1.22e-27

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 101.08  E-value: 1.22e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK08486   1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKGEEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLT 80

                         90       100
                 ....*....|....*....|....*
gi 6647823    81 QEKW-EKEGKKFSKVRIIAENVRLI 104
Cdd:PRK08486  81 FESWmDQNGQKRSKHTITAESMQML 105
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-90 4.80e-22

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 85.20  E-value: 4.80e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEfqEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK07274   1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNGE--READFINVVLWGKLAETLASYASKGSLISIDGELR 78

                         90
                 ....*....|
gi 6647823    81 QEKWEKEGKK 90
Cdd:PRK07274  79 TRKYEKDGQT 88
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-111 3.74e-20

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 81.38  E-value: 3.74e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEfqEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK06751   1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGE--READFINCVIWRKQAENVANYLKKGSLAGVDGRLQ 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 6647823    81 QEKWE-KEGKKFSKVRIIAENVRLIN-RPKGAE 111
Cdd:PRK06751  79 TRNYEgQDGKRVYVTEVLAESVQFLEpRNGGGE 111
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-104 1.90e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 79.16  E-value: 1.90e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEfqEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK07275   1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGE--READFINCVIWRQQAENLANWAKKGALIGVTGRIQ 78

                         90       100
                 ....*....|....*....|....*
gi 6647823    81 QEKWE-KEGKKFSKVRIIAENVRLI 104
Cdd:PRK07275  79 TRNYEnQQGQRVYVTEVVADNFQML 103
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 2-113 3.26e-18

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 76.51  E-value: 3.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKN-QNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK05733   5 VNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDkQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQ 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 6647823    81 QEKWEKEGKKFSKVRIIAE---NVRLI-NRPKGAELQ 113
Cdd:PRK05733  85 TREWEKDGIKRYTTEIVVDmqgTMQLLgGRPQGDDQG 121
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 2-110 5.52e-18

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 75.99  E-value: 5.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKN-QNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK06958   4 VNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDkASGEFKEATEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIR 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 6647823    81 QEKWE-KEGKKFSKVRIIAENVRLINRPKGA 110
Cdd:PRK06958  84 TRKWQgQDGQDRYSTEIVADQMQMLGGRGGS 114
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 2-88 3.72e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 68.60  E-value: 3.72e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKN-QNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK13732   6 INKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDkQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85


                 ....*...
gi 6647823    81 QEKWEKEG 88
Cdd:PRK13732  86 TRSWEDNG 93
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 7-101 5.38e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 65.44  E-value: 5.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     7 IIGRLTGDPVITYLPSGTPVVEFTLAYN-RRYKNQNGEFQE-ESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQEKW 84
Cdd:PRK07772   9 VVGNLTADPELRFTPSGAAVANFTVASTpRTFDRQTNEWKDgEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSY 88

                         90
                 ....*....|....*...
gi 6647823    85 E-KEGKKFSKVRIIAENV 101
Cdd:PRK07772  89 EtREGEKRTVVELEVDEI 106
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-113 5.88e-14

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 63.90  E-value: 5.88e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     1 MLNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEEshFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK06752   1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVD--FINCVVWRKSAENVTEYCTKGSLVGITGRIH 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 6647823    81 QEKWEKE-GKKFSKVRIIAENVRLINRPKGAELQ 113
Cdd:PRK06752  79 TRNYEDDqGKRIYITEVVIESITFLERRREGASQ 112
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 2-85 1.16e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 64.48  E-value: 1.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKN-QNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK09010   6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDkQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLR 85


                 ....*
gi 6647823    81 QEKWE 85
Cdd:PRK09010  86 TRKWT 90
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 2-85 1.93e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 60.08  E-value: 1.93e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNqngefqEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:PRK07459   3 LNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRD------DEPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKF 76


                 ....
gi 6647823    82 EKWE 85
Cdd:PRK07459  77 DRWT 80
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 2-104 1.68e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 55.72  E-value: 1.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQNGEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:PRK08763   5 INKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRY 84

                         90       100
                 ....*....|....*....|....
gi 6647823    82 EKWE-KEGKKFSKVRIIAENVRLI 104
Cdd:PRK08763  85 DKFTgQDGQERYVTEIVADEMQML 108
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 2-87 2.16e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 55.74  E-value: 2.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQN-GEFQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLS 80
Cdd:PRK06863   4 INKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNtGERREVTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLK 83


                 ....*..
gi 6647823    81 QEKWEKE 87
Cdd:PRK06863  84 TRKWQDQ 90
PRK08182 PRK08182
single-stranded DNA-binding protein; Provisional
 42-101 5.98e-07

single-stranded DNA-binding protein; Provisional


Pssm-ID: 169261  Cd Length: 148  Bit Score: 46.21  E-value: 5.98e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6647823    42 GEFQEESHFF-DVKAYGKMAEDWATRFSKGYLVLVEGRLSQEKWE-KEGKKFSKVRIIAENV 101
Cdd:PRK08182  46 GEYEDRGGFWaPVELWHRDAEHWARLYQKGMRVLVEGRMERDEWTdNEDNERVTFKVEARRV 107
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 2-84 1.62e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 42.48  E-value: 1.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQN-GEFQEESHFFDVKAYG----KMAEDWatrFSKGYLVLVE 76
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNsGERKEKTEWHRVVIFNeglcKVAEQY---LKKGAKVYIE 81


                 ....*...
gi 6647823    77 GRLSQEKW 84
Cdd:PRK06341  82 GQLQTRKW 89
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 2-111 5.48e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 41.04  E-value: 5.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNqngefQEESHFFDVKAYGKMAEDWATRFSKGYLVLVEGRLSQ 81
Cdd:PRK06293   1 MMFGYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVGS-----KDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSP 75

                         90       100       110
                 ....*....|....*....|....*....|...
gi 6647823    82 EKW-EKEGKKFSKVRIIAENVRLI--NRPKGAE 111
Cdd:PRK06293  76 ESYvDKDGSPQSSLVVSVDTIKFSpfGRNEGSR 108
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 2-100 7.67e-05

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 40.47  E-value: 7.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6647823     2 LNKVFIIGRLTGDPVITYLPSGTPVVEFTLAYNRRYKNQ-NGEFQEESHFFDVKAYGK----MAEDWATRFSKGYlvlVE 76
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRiTSERKERTEWHRVVIFSEglvsVVERYVTKGSKLY---IE 81

                         90       100
                 ....*....|....*....|....*
gi 6647823    77 GRLSQEKW-EKEGKKFSKVRIIAEN 100
Cdd:PRK06642  82 GSLQTRKWnDNSGQEKYTTEVVLQN 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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