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Conserved domains on  [gi|75097094|sp|O04590|]
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RecName: Full=Pentatricopeptide repeat-containing protein At1g62260, mitochondrial; Flags: Precursor

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 38-653 2.20e-93

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 307.16  E-value: 2.20e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   38 LGFRATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISgyv 113
Cdd:PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMlwagVRPDVYTFPCVLR--- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  114 SCGGIRFLEEARKL--------FDEmpsrDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDS 185
Cdd:PLN03077 196 TCGGIPDLARGREVhahvvrfgFEL----DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  186 AVVLFRKMPVKDSSPlcalvagliknerlseaawvlgqygslvsgreDLVyAYNTLIVGYGQRGQVEAARclfdqipdlc 265
Cdd:PLN03077 272 GLELFFTMRELSVDP--------------------------------DLM-TITSVISACELLGDERLGR---------- 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  266 gDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGY---------VHVSRMED------ 330
Cdd:PLN03077 309 -EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYeknglpdkaLETYALMEqdnvsp 387

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  331 -----AFAL--------------FSEMPNRDAHSW-----NMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEK 386
Cdd:PLN03077 388 deitiASVLsacaclgdldvgvkLHELAERKGLISyvvvaNALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  387 NKDYKEAVdLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRI 465
Cdd:PLN03077 468 NNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQ 546

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  466 FDEMKlkREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQ 545
Cdd:PLN03077 547 FNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  546 MEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADM 625
Cdd:PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704

                        650       660
                 ....*....|....*....|....*...
gi 75097094  626 GLWDEASQVRMNMESKRIKKERGSSWVD 653
Cdd:PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVE 732
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 38-653 2.20e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 307.16  E-value: 2.20e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   38 LGFRATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISgyv 113
Cdd:PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMlwagVRPDVYTFPCVLR--- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  114 SCGGIRFLEEARKL--------FDEmpsrDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDS 185
Cdd:PLN03077 196 TCGGIPDLARGREVhahvvrfgFEL----DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  186 AVVLFRKMPVKDSSPlcalvagliknerlseaawvlgqygslvsgreDLVyAYNTLIVGYGQRGQVEAARclfdqipdlc 265
Cdd:PLN03077 272 GLELFFTMRELSVDP--------------------------------DLM-TITSVISACELLGDERLGR---------- 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  266 gDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGY---------VHVSRMED------ 330
Cdd:PLN03077 309 -EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYeknglpdkaLETYALMEqdnvsp 387

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  331 -----AFAL--------------FSEMPNRDAHSW-----NMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEK 386
Cdd:PLN03077 388 deitiASVLsacaclgdldvgvkLHELAERKGLISyvvvaNALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  387 NKDYKEAVdLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRI 465
Cdd:PLN03077 468 NNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQ 546

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  466 FDEMKlkREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQ 545
Cdd:PLN03077 547 FNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  546 MEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADM 625
Cdd:PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704

                        650       660
                 ....*....|....*....|....*...
gi 75097094  626 GLWDEASQVRMNMESKRIKKERGSSWVD 653
Cdd:PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVE 732
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 69-112 4.66e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 4.66e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 75097094    69 RNTVTWNTMISGYVKRREMNQARKLFDVMPKR----DVVTWNTMISGY 112
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
233-397 6.18e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 6.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 233 DLVYAYNTLIVGYGQRGQVEAARCLFDQI----PDlcgddhggefrerfckNVVSWNSMIKAYLKVGDVVSARLLFDQ-- 306
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKAleldPD----------------DAEALYNLGLAYLRLGRYEEALADYEQal 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 307 -MKDRDTISWNTMIDGYVHVSRMEDAFALFS---EMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPE---KHTVSWNS 379
Cdd:COG0457  70 eLDPDDAEALNNLGLALQALGRYEEALEDYDkalELDPDDAEALYNLGLALLELGRYDEAIEAYERALEldpDDADALYN 149

                       170
                ....*....|....*...
gi 75097094 380 IIAAYEKNKDYKEAVDLF 397
Cdd:COG0457 150 LGIALEKLGRYEEALELL 167
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 137-166 8.45e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 8.45e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   137 FSWNTMISGYAKNRRIGEALLLFEKMPERN 166
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 38-653 2.20e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 307.16  E-value: 2.20e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   38 LGFRATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVM----PKRDVVTWNTMISgyv 113
Cdd:PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMlwagVRPDVYTFPCVLR--- 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  114 SCGGIRFLEEARKL--------FDEmpsrDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDS 185
Cdd:PLN03077 196 TCGGIPDLARGREVhahvvrfgFEL----DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  186 AVVLFRKMPVKDSSPlcalvagliknerlseaawvlgqygslvsgreDLVyAYNTLIVGYGQRGQVEAARclfdqipdlc 265
Cdd:PLN03077 272 GLELFFTMRELSVDP--------------------------------DLM-TITSVISACELLGDERLGR---------- 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  266 gDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGY---------VHVSRMED------ 330
Cdd:PLN03077 309 -EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYeknglpdkaLETYALMEqdnvsp 387

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  331 -----AFAL--------------FSEMPNRDAHSW-----NMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEK 386
Cdd:PLN03077 388 deitiASVLsacaclgdldvgvkLHELAERKGLISyvvvaNALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  387 NKDYKEAVdLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRI 465
Cdd:PLN03077 468 NNRCFEAL-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQ 546

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  466 FDEMKlkREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQ 545
Cdd:PLN03077 547 FNSHE--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  546 MEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADM 625
Cdd:PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704

                        650       660
                 ....*....|....*....|....*...
gi 75097094  626 GLWDEASQVRMNMESKRIKKERGSSWVD 653
Cdd:PLN03077 705 GKWDEVARVRKTMRENGLTVDPGCSWVE 732
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 284-653 8.22e-85

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 280.60  E-value: 8.22e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  284 WNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEM----PNRDAHSWNMMVSG------- 352
Cdd:PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMwedgSDAEPRTFVVMLRAsaglgsa 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  353 ----------------------------YASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEG 404
Cdd:PLN03081 241 ragqqlhccvlktgvvgdtfvscalidmYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  405 EKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRIFDEMKlKREVITWNAMIG 483
Cdd:PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPlDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIA 399

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  484 GYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFE 563
Cdd:PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  564 EAMYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRI 643
Cdd:PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559

                        410
                 ....*....|
gi 75097094  644 KKERGSSWVD 653
Cdd:PLN03081 560 SMHPACTWIE 569
PLN03077 PLN03077
Protein ECB2; Provisional
 428-643 1.12e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 74.50  E-value: 1.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  428 GMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRIFDEMKlKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGI 506
Cdd:PLN03077 105 GSRVCSRALSSHPSlGVRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  507 YPSHITFVSVLNACahAGLVDEAKAQFVSMMSV-YKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMP------------ 573
Cdd:PLN03077 184 RPDVYTFPCVLRTC--GGIPDLARGREVHAHVVrFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPrrdciswnamis 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094  574 --FE--------------------PDKTVWGALLDACRIYNNVGLA-HVAAEAMSRLEPESSTPYVLLYNMYADMGLWDE 630
Cdd:PLN03077 262 gyFEngecleglelfftmrelsvdPDLMTITSVISACELLGDERLGrEMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341

                        250
                 ....*....|...
gi 75097094  631 ASQVRMNMESKRI 643
Cdd:PLN03077 342 AEKVFSRMETKDA 354
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 69-112 4.66e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.84  E-value: 4.66e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 75097094    69 RNTVTWNTMISGYVKRREMNQARKLFDVMPKR----DVVTWNTMISGY 112
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 329-587 5.35e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 66.05  E-value: 5.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   329 EDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEK----HTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEG 404
Cdd:PLN03218  423 KEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAglkaDCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   405 EKPDPHTLTSLLS--ASTGLVNLRLGMqmHQIVV-KTVIPDVPVHNALITMysrCGEIMESRRIFD---EMKlkrevitw 478
Cdd:PLN03218  503 VEANVHTFGALIDgcARAGQVAKAFGA--YGIMRsKNVKPDRVVFNALISA---CGQSGAVDRAFDvlaEMK-------- 569

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   479 namiggyafhgnaSEAlnlfgsmksNGIYPSHITFVSVLNACAHAGLVDEAKAQFvSMMSVYKIEPQMEHYSSLVNVTSG 558
Cdd:PLN03218  570 -------------AET---------HPIDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQ 626

                         250       260       270
                  ....*....|....*....|....*....|..
gi 75097094   559 QGQFEEAMYIITSMP---FEPDKTVWGALLDA 587
Cdd:PLN03218  627 KGDWDFALSIYDDMKkkgVKPDEVFFSALVDV 658
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 475-522 1.15e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.15e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 75097094   475 VITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAH 522
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 591-653 1.59e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 57.17  E-value: 1.59e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75097094   591 YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWVD 653
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 100-148 1.99e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.22  E-value: 1.99e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 75097094   100 RDVVTWNTMISGYVSCGGIrflEEARKLFDEMPSR----DSFSWNTMISGYAK 148
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKV---EEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 134-179 4.56e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.45  E-value: 4.56e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 75097094   134 RDSFSWNTMISGYAKNRRIGEALLLFEKMPER----NAVSWSAMITGFCQ 179
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 279-324 8.21e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.68  E-value: 8.21e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 75097094   279 KNVVSWNSMIKAYLKVGDVVSARLLFDQMKDR----DTISWNTMIDGYVH 324
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 310-354 1.33e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.91  E-value: 1.33e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 75097094   310 RDTISWNTMIDGYVHVSRMEDAFALFSEMPNR----DAHSWNMMVSGYA 354
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 374-418 3.92e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.67  E-value: 3.92e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 75097094   374 TVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSA 418
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
233-397 6.18e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 6.18e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 233 DLVYAYNTLIVGYGQRGQVEAARCLFDQI----PDlcgddhggefrerfckNVVSWNSMIKAYLKVGDVVSARLLFDQ-- 306
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKAleldPD----------------DAEALYNLGLAYLRLGRYEEALADYEQal 69

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 307 -MKDRDTISWNTMIDGYVHVSRMEDAFALFS---EMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPE---KHTVSWNS 379
Cdd:COG0457  70 eLDPDDAEALNNLGLALQALGRYEEALEDYDkalELDPDDAEALYNLGLALLELGRYDEAIEAYERALEldpDDADALYN 149

                       170
                ....*....|....*...
gi 75097094 380 IIAAYEKNKDYKEAVDLF 397
Cdd:COG0457 150 LGIALEKLGRYEEALELL 167
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 164-193 7.24e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 45.80  E-value: 7.24e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   164 ERNAVSWSAMITGFCQNGEVDSAVVLFRKM 193
Cdd:pfam12854   4 KPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 464-520 1.86e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 45.43  E-value: 1.86e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   464 RIFDEMK---LKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520
Cdd:pfam13812   1 SILREMVrdgIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 137-166 5.74e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 5.74e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   137 FSWNTMISGYAKNRRIGEALLLFEKMPERN 166
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 99-131 7.61e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 43.10  E-value: 7.61e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 75097094    99 KRDVVTWNTMISGYVSCGgirFLEEARKLFDEM 131
Cdd:pfam12854   4 KPDVVTYNTLINGLCRAG---RVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 476-506 8.92e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.84  E-value: 8.92e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75097094   476 ITWNAMIGGYAFHGNASEALNLFGSMKSNGI 506
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 103-134 3.63e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.91  E-value: 3.63e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 75097094   103 VTWNTMISGYVSCGgirFLEEARKLFDEMPSR 134
Cdd:pfam01535   1 VTYNSLISGYCKNG---KLEEALELFKEMKEK 29
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
279-399 5.85e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 5.85e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 279 KNVVSWNSMIKAYLKVGDVVSARLLFDQ---MKDRDTISWNTMIDGYVHVSRMEDAFALFS---EMPNRDAHSWNMMVSG 352
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKaleLDPDDAEALYNLGLAYLRLGRYEEALADYEqalELDPDDAEALNNLGLA 85

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 75097094 353 YASVGNVELARHYFEKTPE---KHTVSWNSIIAAYEKNKDYKEAVDLFIR 399
Cdd:COG0457  86 LQALGRYEEALEDYDKALEldpDDAEALYNLGLALLELGRYDEAIEAYER 135
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 72-102 7.79e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 7.79e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75097094    72 VTWNTMISGYVKRREMNQARKLFDVMPKRDV 102
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 137-166 8.45e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 8.45e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   137 FSWNTMISGYAKNRRIGEALLLFEKMPERN 166
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 238-520 9.31e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 45.64  E-value: 9.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   238 YNTLIVGYGQRGQVEAARCLFDQIpdlcgDDHGGEfrerfcKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDR----DTI 313
Cdd:PLN03218  475 YTTLISTCAKSGKVDAMFEVFHEM-----VNAGVE------ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKnvkpDRV 543

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   314 SWNTMIDGYVHVSRMEDAFALFSEM-----PNRDAH-SWNMMVSGYASVGNVELARHYFEK--------TPEKHTVSWNS 379
Cdd:PLN03218  544 VFNALISACGQSGAVDRAFDVLAEMkaethPIDPDHiTVGALMKACANAGQVDRAKEVYQMiheynikgTPEVYTIAVNS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   380 iiaaYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSAS--TGLVNLRLGMqMHQIVVKTVIPDVPVHNALITMYSRCG 457
Cdd:PLN03218  624 ----CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAghAGDLDKAFEI-LQDARKQGIKLGTVSYSSLMGACSNAK 698

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 75097094   458 EIMESRRIFDE---MKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520
Cdd:PLN03218  699 NWKKALELYEDiksIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 70-97 1.19e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.64  E-value: 1.19e-04
                          10        20
                  ....*....|....*....|....*...
gi 75097094    70 NTVTWNTMISGYVKRREMNQARKLFDVM 97
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 165-200 1.45e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 1.45e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 75097094   165 RNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP 200
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKP 36
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 135-162 1.64e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 1.64e-04
                          10        20
                  ....*....|....*....|....*...
gi 75097094   135 DSFSWNTMISGYAKNRRIGEALLLFEKM 162
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 72-103 2.05e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 2.05e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 75097094    72 VTWNTMISGYVKRREMNQARKLFDVMPKRDVV 103
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 168-193 2.16e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 2.16e-04
                          10        20
                  ....*....|....*....|....*.
gi 75097094   168 VSWSAMITGFCQNGEVDSAVVLFRKM 193
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 282-310 2.69e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 2.69e-04
                          10        20
                  ....*....|....*....|....*....
gi 75097094   282 VSWNSMIKAYLKVGDVVSARLLFDQMKDR 310
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 441-486 2.72e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.88  E-value: 2.72e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 75097094   441 PDVPVHNALITMYSRCGEIMESRRIFDEMKLKRE---VITWNAMIGGYA 486
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVkpnVYTYTILINGLC 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 313-338 2.88e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 2.88e-04
                          10        20
                  ....*....|....*....|....*.
gi 75097094   313 ISWNTMIDGYVHVSRMEDAFALFSEM 338
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 228-520 3.43e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.10  E-value: 3.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   228 VSGREDLVYAYNTLIVGYGQRGQVEAArclFdqipdlcgddhgGEFRERFCKNV----VSWNSMIKAYLKVGDVVSARLL 303
Cdd:PLN03218  500 NAGVEANVHTFGALIDGCARAGQVAKA---F------------GAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDV 564

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   304 FDQMK------DRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHS----WNMMVSGYASVGNVELARHYFEKTPEKH 373
Cdd:PLN03218  565 LAEMKaethpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGtpevYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   374 T----VSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQ-IVVKTVIPDVPVHNA 448
Cdd:PLN03218  645 VkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEdIKSIKLRPTVSTMNA 724

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75097094   449 LITMYSRCGEIMESRRIFDEMK---LKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520
Cdd:PLN03218  725 LITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 235-293 3.95e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.50  E-value: 3.95e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   235 VYAYNTLIVGYGQRGQVEAARCLFDQIpdlcgddhggefRERFCK-NVVSWNSMIKAYLK 293
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEM------------KKRGVKpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 282-311 6.09e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 6.09e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   282 VSWNSMIKAYLKVGDVVSARLLFDQMKDRD 311
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 375-400 7.10e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 7.10e-04
                          10        20
                  ....*....|....*....|....*.
gi 75097094   375 VSWNSIIAAYEKNKDYKEAVDLFIRM 400
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 476-509 7.20e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 7.20e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 75097094   476 ITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPS 509
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 313-342 9.67e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 9.67e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 75097094   313 ISWNTMIDGYVHVSRMEDAFALFSEMPNRD 342
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 311-338 1.15e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.94  E-value: 1.15e-03
                          10        20
                  ....*....|....*....|....*...
gi 75097094   311 DTISWNTMIDGYVHVSRMEDAFALFSEM 338
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 488-572 1.49e-03

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 40.46  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094   488 HGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQ------FVSM--MSVYKIEPQMEHYSSLVNVTSGQ 559
Cdd:pfam17177  24 HADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLKPQlaadrgFEVFeaMKAQGVSPNEATYTAVARLAAAK 103

                          90
                  ....*....|...
gi 75097094   560 GQFEEAMYIITSM 572
Cdd:pfam17177 104 GDGDLAFDLVKEM 116
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 168-200 1.54e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 1.54e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 75097094   168 VSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP 200
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 280-308 1.86e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.17  E-value: 1.86e-03
                          10        20
                  ....*....|....*....|....*....
gi 75097094   280 NVVSWNSMIKAYLKVGDVVSARLLFDQMK 308
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 208-397 3.92e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 3.92e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 208 LIKNERLSEAawvLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIpdlcgddhggefRERFCKNVVSWNSM 287
Cdd:COG2956  18 YLLNGQPDKA---IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL------------LERDPDRAEALLEL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 288 IKAYLKVGDVVSARLLFDQ---MKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNR---DAHSWNMMVSGYASVGNVEL 361
Cdd:COG2956  83 AQDYLKAGLLDRAEELLEKlleLDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLgpeNAHAYCELAELYLEQGDYDE 162

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 75097094 362 ARHYFEK---TPEKHTVSWNSIIAAYEKNKDYKEAVDLF 397
Cdd:COG2956 163 AIEALEKalkLDPDCARALLLLAELYLEQGDYEEAIAAL 201
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 103-135 3.99e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 3.99e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 75097094   103 VTWNTMISGYVSCGgirFLEEARKLFDEMPSRD 135
Cdd:TIGR00756   1 VTYNTLIDGLCKAG---RVEEALELFKEMKERG 30
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 375-408 5.42e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 5.42e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 75097094   375 VSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPD 408
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 289-399 6.98e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 6.98e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75097094 289 KAYLKVGDVVSARLLFDQ---MKDRDTISWNTMIDGYVHVSRMEDAFALFSE---MPNRDAHSWNMMVSGYASVGNVELA 362
Cdd:COG4783  12 QALLLAGDYDEAEALLEKaleLDPDNPEAFALLGEILLQLGDLDEAIVLLHEaleLDPDEPEARLNLGLALLKAGDYDEA 91

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 75097094 363 RHYFEK----TPEkHTVSWNSIIAAYEKNKDYKEAVDLFIR 399
Cdd:COG4783  92 LALLEKalklDPE-HPEAYLRLARAYRALGRPDEAIAALEK 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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