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Conserved domains on  [gi|408684413|ref|NP_991388|]
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toll-like receptor 11 [Mus musculus]

Protein Classification

LRR and TIR_2 domain-containing protein( domain architecture ID 11471160)

LRR and TIR_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
171-576 3.53e-25

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 109.25  E-value: 3.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 171 CLTYSQSIYLPTSLRHLTLRNSCLTKFQDLQRLFPDLLLSTSSTPNIKPGAPFLETLDLSYNLQLKQAGVRDLYGLTLHS 250
Cdd:COG4886   11 KLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 251 LILDGTPLKALDLTD----SGLLHLHFLSLVGTGIEKVPASLTGYSELRALDLGKNQIQNILEngEIPGYKALEFLSLHD 326
Cdd:COG4886   91 DLGDLTNLTELDLSGneelSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPE--PLGNLTNLKSLDLSN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 327 NHLQTLPtRFLHTLPQLQKLNLSMNKLGpilELPEGLFS-TNLKVLDLSYNQLCDVPhGALSLLSQLQELWLSGNNISSL 405
Cdd:COG4886  169 NQLTDLP-EELGNLTNLKELDLSNNQIT---DLPEPLGNlTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTDL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 406 snESLQGLRQLRTLDLSWNQIKVLKPgwLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGSYPILDIYPPWPPTL 485
Cdd:COG4886  244 --PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLL 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 486 LSLEIQAESCIQFMIHSGQPFLFLENLTLETSILLLKPDNITIHFPSLRRLTLRGYSFIFSTSQLQRFFPQQLPLLEHFF 565
Cdd:COG4886  320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399

                        410
                 ....*....|.
gi 408684413 566 IWCENSYAVDL 576
Cdd:COG4886  400 VLLLTLALLDA 410
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 781-861 9.03e-17

TIR domain; This is a family of Toll-like receptors.


:

Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 76.97  E-value: 9.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413  781 VFISYCEEDQAWVlEELVPVLEKAppegeGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLELRL 860
Cdd:pfam13676   1 VFISYAGEDRAWA-EWLADALEAA-----GYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEA 74


                  .
gi 408684413  861 A 861
Cdd:pfam13676  75 A 75
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
171-576 3.53e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 109.25  E-value: 3.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 171 CLTYSQSIYLPTSLRHLTLRNSCLTKFQDLQRLFPDLLLSTSSTPNIKPGAPFLETLDLSYNLQLKQAGVRDLYGLTLHS 250
Cdd:COG4886   11 KLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 251 LILDGTPLKALDLTD----SGLLHLHFLSLVGTGIEKVPASLTGYSELRALDLGKNQIQNILEngEIPGYKALEFLSLHD 326
Cdd:COG4886   91 DLGDLTNLTELDLSGneelSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPE--PLGNLTNLKSLDLSN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 327 NHLQTLPtRFLHTLPQLQKLNLSMNKLGpilELPEGLFS-TNLKVLDLSYNQLCDVPhGALSLLSQLQELWLSGNNISSL 405
Cdd:COG4886  169 NQLTDLP-EELGNLTNLKELDLSNNQIT---DLPEPLGNlTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTDL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 406 snESLQGLRQLRTLDLSWNQIKVLKPgwLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGSYPILDIYPPWPPTL 485
Cdd:COG4886  244 --PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLL 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 486 LSLEIQAESCIQFMIHSGQPFLFLENLTLETSILLLKPDNITIHFPSLRRLTLRGYSFIFSTSQLQRFFPQQLPLLEHFF 565
Cdd:COG4886  320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399

                        410
                 ....*....|.
gi 408684413 566 IWCENSYAVDL 576
Cdd:COG4886  400 VLLLTLALLDA 410
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 781-861 9.03e-17

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 76.97  E-value: 9.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413  781 VFISYCEEDQAWVlEELVPVLEKAppegeGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLELRL 860
Cdd:pfam13676   1 VFISYAGEDRAWA-EWLADALEAA-----GYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEA 74


                  .
gi 408684413  861 A 861
Cdd:pfam13676  75 A 75
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 268-447 2.04e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 70.59  E-value: 2.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 268 LLHLHflsLVGTGIEKVPAsLTGYSELRALDLGKNQIQNIlENgeIPGYKALEFLSLHDNHLQTLPtrFLHTLPQLQKLN 347
Cdd:cd21340    4 ITHLY---LNDKNITKIDN-LSLCKNLKVLYLYDNKITKI-EN--LEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLY 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 348 LSMNKLGPIlelpEGLFS-TNLKVLDLSYNQLcdvPHGALSLLSQLQELWL---------SGNNISSLsnESLQGLRQLR 417
Cdd:cd21340   75 LGGNRISVV----EGLENlTNLEELHIENQRL---PPGEKLTFDPRSLAALsnslrvlniSGNNIDSL--EPLAPLRNLE 145

                        170       180       190
                 ....*....|....*....|....*....|..
gi 408684413 418 TLDLSWNQIKVLKP--GWLSHLPALTTLNLLG 447
Cdd:cd21340  146 QLDASNNQISDLEEllDLLSSWPSLRELDLTG 177
TIR smart00255
Toll - interleukin 1 - resistance;
779-861 3.67e-11

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 61.96  E-value: 3.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413   779 YDVFISYCEEDqaWVLEELVPVLEKAppeGEGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLEL 858
Cdd:smart00255   2 YDVFISYSGKE--DVRNEFLSHLLEK---LRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDEL 76


                   ...
gi 408684413   859 RLA 861
Cdd:smart00255  77 VAA 79
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 263-445 5.97e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 66.41  E-value: 5.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 263 LTDSGllHLHFLSLVGTGIE-KVPASLTGYSELRALDLGKNQIqnileNGEIP-GYKALE---FLSLHDNHLQTLPTRFL 337
Cdd:PLN00113 376 LCSSG--NLFKLILFSNSLEgEIPKSLGACRSLRRVRLQDNSF-----SGELPsEFTKLPlvyFLDISNNNLQGRINSRK 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 338 HTLPQLQKLNLSMNKLgpILELPEGLFSTNLKVLDLSYNQLCDVPHGALSLLSQLQELWLSGNNISSLSNESLQGLRQLR 417
Cdd:PLN00113 449 WDMPSLQMLSLARNKF--FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

                        170       180
                 ....*....|....*....|....*...
gi 408684413 418 TLDLSWNQIKVLKPGWLSHLPALTTLNL 445
Cdd:PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDL 554
LRR_8 pfam13855
Leucine rich repeat;
397-450 8.70e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.53  E-value: 8.70e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 408684413  397 LSGNNISSLSNESLQGLRQLRTLDLSWNQIKVLKPGWLSHLPALTTLNLLGTYL 450
Cdd:pfam13855   8 LSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
171-576 3.53e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 109.25  E-value: 3.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 171 CLTYSQSIYLPTSLRHLTLRNSCLTKFQDLQRLFPDLLLSTSSTPNIKPGAPFLETLDLSYNLQLKQAGVRDLYGLTLHS 250
Cdd:COG4886   11 KLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 251 LILDGTPLKALDLTD----SGLLHLHFLSLVGTGIEKVPASLTGYSELRALDLGKNQIQNILEngEIPGYKALEFLSLHD 326
Cdd:COG4886   91 DLGDLTNLTELDLSGneelSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPE--PLGNLTNLKSLDLSN 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 327 NHLQTLPtRFLHTLPQLQKLNLSMNKLGpilELPEGLFS-TNLKVLDLSYNQLCDVPhGALSLLSQLQELWLSGNNISSL 405
Cdd:COG4886  169 NQLTDLP-EELGNLTNLKELDLSNNQIT---DLPEPLGNlTNLEELDLSGNQLTDLP-EPLANLTNLETLDLSNNQLTDL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 406 snESLQGLRQLRTLDLSWNQIKVLKPgwLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGSYPILDIYPPWPPTL 485
Cdd:COG4886  244 --PELGNLTNLEELDLSNNQLTDLPP--LANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLL 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 486 LSLEIQAESCIQFMIHSGQPFLFLENLTLETSILLLKPDNITIHFPSLRRLTLRGYSFIFSTSQLQRFFPQQLPLLEHFF 565
Cdd:COG4886  320 LTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAG 399

                        410
                 ....*....|.
gi 408684413 566 IWCENSYAVDL 576
Cdd:COG4886  400 VLLLTLALLDA 410
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
187-528 7.19e-22

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 99.24  E-value: 7.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 187 LTLRNSCLTKFQDLQRLFPDLLLSTSSTPNIKpGAPFLETLDLSYNlQLKQAGVrDLYGLT-LHSLILDGTPLKALDLTD 265
Cdd:COG4886   79 LLLLSLLLLGLTDLGDLTNLTELDLSGNEELS-NLTNLESLDLSGN-QLTDLPE-ELANLTnLKELDLSNNQLTDLPEPL 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 266 SGLLHLHFLSLVGTGIEKVPASLTGYSELRALDLGKNQIQNILEngEIPGYKALEFLSLHDNHLQTLPtRFLHTLPQLQK 345
Cdd:COG4886  156 GNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPE--PLGNLTNLEELDLSGNQLTDLP-EPLANLTNLET 232

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 346 LNLSMNKLGPILELpEGLfsTNLKVLDLSYNQLCDVPHGAlsLLSQLQELWLSGNNISSLSNESLQGLRQLRTLDLSWNQ 425
Cdd:COG4886  233 LDLSNNQLTDLPEL-GNL--TNLEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLL 307

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 426 IK----VLKPGWLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGSYPILDIYPPWPPTLLSLEIQAESCIQFMIH 501
Cdd:COG4886  308 LNllelLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLL 387

                        330       340
                 ....*....|....*....|....*..
gi 408684413 502 SGQPFLFLENLTLETSILLLKPDNITI 528
Cdd:COG4886  388 TLLLLLLTTTAGVLLLTLALLDAVNTE 414
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 781-861 9.03e-17

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 76.97  E-value: 9.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413  781 VFISYCEEDQAWVlEELVPVLEKAppegeGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLELRL 860
Cdd:pfam13676   1 VFISYAGEDRAWA-EWLADALEAA-----GYRVWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEA 74


                  .
gi 408684413  861 A 861
Cdd:pfam13676  75 A 75
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 268-447 2.04e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 70.59  E-value: 2.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 268 LLHLHflsLVGTGIEKVPAsLTGYSELRALDLGKNQIQNIlENgeIPGYKALEFLSLHDNHLQTLPtrFLHTLPQLQKLN 347
Cdd:cd21340    4 ITHLY---LNDKNITKIDN-LSLCKNLKVLYLYDNKITKI-EN--LEFLTNLTHLYLQNNQIEKIE--NLENLVNLKKLY 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 348 LSMNKLGPIlelpEGLFS-TNLKVLDLSYNQLcdvPHGALSLLSQLQELWL---------SGNNISSLsnESLQGLRQLR 417
Cdd:cd21340   75 LGGNRISVV----EGLENlTNLEELHIENQRL---PPGEKLTFDPRSLAALsnslrvlniSGNNIDSL--EPLAPLRNLE 145

                        170       180       190
                 ....*....|....*....|....*....|..
gi 408684413 418 TLDLSWNQIKVLKP--GWLSHLPALTTLNLLG 447
Cdd:cd21340  146 QLDASNNQISDLEEllDLLSSWPSLRELDLTG 177
TIR smart00255
Toll - interleukin 1 - resistance;
779-861 3.67e-11

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 61.96  E-value: 3.67e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413   779 YDVFISYCEEDqaWVLEELVPVLEKAppeGEGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLEL 858
Cdd:smart00255   2 YDVFISYSGKE--DVRNEFLSHLLEK---LRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDEL 76


                   ...
gi 408684413   859 RLA 861
Cdd:smart00255  77 VAA 79
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 263-445 5.97e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 66.41  E-value: 5.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 263 LTDSGllHLHFLSLVGTGIE-KVPASLTGYSELRALDLGKNQIqnileNGEIP-GYKALE---FLSLHDNHLQTLPTRFL 337
Cdd:PLN00113 376 LCSSG--NLFKLILFSNSLEgEIPKSLGACRSLRRVRLQDNSF-----SGELPsEFTKLPlvyFLDISNNNLQGRINSRK 448

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 338 HTLPQLQKLNLSMNKLgpILELPEGLFSTNLKVLDLSYNQLCDVPHGALSLLSQLQELWLSGNNISSLSNESLQGLRQLR 417
Cdd:PLN00113 449 WDMPSLQMLSLARNKF--FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

                        170       180
                 ....*....|....*....|....*...
gi 408684413 418 TLDLSWNQIKVLKPGWLSHLPALTTLNL 445
Cdd:PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDL 554
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
207-654 8.42e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 61.87  E-value: 8.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 207 LLLSTSSTPNIKPGAPFLETLDLSYNLQLKQAGVRDLYGLTLHSLILDGTPLKALDLTDSGLLHLHFLSLVGTGIEKVPA 286
Cdd:COG4886   11 KLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 287 SLTGYSELRALDLGknqiqnilENGEIPGYKALEFLSLHDNHLQTLPTrFLHTLPQLQKLNLSMNKLGpilELPEGLFS- 365
Cdd:COG4886   91 DLGDLTNLTELDLS--------GNEELSNLTNLESLDLSGNQLTDLPE-ELANLTNLKELDLSNNQLT---DLPEPLGNl 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 366 TNLKVLDLSYNQLCDVPhgalsllsqlqelwlsgnnisslsnESLQGLRQLRTLDLSWNQIKVLkPGWLSHLPALTTLNL 445
Cdd:COG4886  159 TNLKSLDLSNNQLTDLP-------------------------EELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDL 212

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 446 LGTYLEYIlgiqlqgpkmlrhlqlgsypildiyppwpptllsleiqaesciqfmihsgqpflflenltletsilllkPDN 525
Cdd:COG4886  213 SGNQLTDL---------------------------------------------------------------------PEP 223

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 526 ITiHFPSLRRLTLRGysfifstSQLQrffpqQLPllehffiwcensyavdlYLFGMPRLRVLELGYLNFFYESSTMKLem 605
Cdd:COG4886  224 LA-NLTNLETLDLSN-------NQLT-----DLP-----------------ELGNLTNLEELDLSNNQLTDLPPLANL-- 271

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*....
gi 408684413 606 llkevPQLQVLALSHLNLRNLSVSSFKSLQDLKLLLFNSERALEMNSNL 654
Cdd:COG4886  272 -----TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLI 315
LRR_8 pfam13855
Leucine rich repeat;
397-450 8.70e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 52.53  E-value: 8.70e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 408684413  397 LSGNNISSLSNESLQGLRQLRTLDLSWNQIKVLKPGWLSHLPALTTLNLLGTYL 450
Cdd:pfam13855   8 LSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 224-426 2.56e-08

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 57.49  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 224 LETLDLSYNlQLKQAGVRDLY-----GLTLHSLILDGTPL---------KALdltdSGLLHLHFLSLVGT-----GIEKV 284
Cdd:COG5238  182 VETVYLGCN-QIGDEGIEELAealtqNTTVTTLWLKRNPIgdegaeilaEAL----KGNKSLTTLDLSNNqigdeGVIAL 256

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 285 PASLTGYSELRALDLGKNQIQNilengeiPGYKALEflslhdNHLQTLPTrflhtlpqLQKLNLSMNKLGP--ILELPEG 362
Cdd:COG5238  257 AEALKNNTTVETLYLSGNQIGA-------EGAIALA------KALQGNTT--------LTSLDLSVNRIGDegAIALAEG 315

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 408684413 363 LFSTN-LKVLDLSYNQLCDVphGALSLLSQLQELW------LSGNNISSLSN----ESLQGLRQLRTLDLSWNQI 426
Cdd:COG5238  316 LQGNKtLHTLNLAYNGIGAQ--GAIALAKALQENTtlhsldLSDNQIGDEGAialaKYLEGNTTLRELNLGKNNI 388
LRR_8 pfam13855
Leucine rich repeat;
366-426 8.87e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.75  E-value: 8.87e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 408684413  366 TNLKVLDLSYNQLCDVPHGALSLLSQLQELWLSGNNISSLSNESLQGLRQLRTLDLSWNQI 426
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 184-427 1.17e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.59  E-value: 1.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 184 LRHLTLRNSCLTkfQDLQRLFPDLLLSTSstpnikpgapfLETLDLSYNLQLKQAGVRDLYGLTLHSLildgtPLKALDL 263
Cdd:cd00116   83 LQELDLSDNALG--PDGCGVLESLLRSSS-----------LQELKLNNNGLGDRGLRLLAKGLKDLPP-----ALEKLVL 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 264 TDSgllhlhflSLVGTGIEKVPASLTGYSELRALDLGKNQIQnilENG------EIPGYKALEFLSLHDNHLQTLPTRFL 337
Cdd:cd00116  145 GRN--------RLEGASCEALAKALRANRDLKELNLANNGIG---DAGiralaeGLKANCNLEVLDLNNNGLTDEGASAL 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 338 ----HTLPQLQKLNLSMNKLG--PILELPEGLFSTNLKVLDLsynqlcdvphgalsllsqlqelWLSGNNISSLSNESL- 410
Cdd:cd00116  214 aetlASLKSLEVLNLGDNNLTdaGAAALASALLSPNISLLTL----------------------SLSCNDITDDGAKDLa 271

                        250       260
                 ....*....|....*....|
gi 408684413 411 QGLRQ---LRTLDLSWNQIK 427
Cdd:cd00116  272 EVLAEkesLLELDLRGNKFG 291
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 222-471 2.57e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 51.39  E-value: 2.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 222 PFLETLDLSYNlqlkqagvrDLYGLTLHSLILDGTPLKALDLTD---SGLLHLHFLSLVGT---------GieKVPASLT 289
Cdd:PLN00113  93 PYIQTINLSNN---------QLSGPIPDDIFTTSSSLRYLNLSNnnfTGSIPRGSIPNLETldlsnnmlsG--EIPNDIG 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 290 GYSELRALDLGKNQIQnilenGEIPGY----KALEFLSLHDNHLQTLPTRFLHTLPQLQKLNLSMNKLGPilELPEGLFS 365
Cdd:PLN00113 162 SFSSLKVLDLGGNVLV-----GKIPNSltnlTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGG 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 366 -TNLKVLDLSYNQLCDVPHGALSLLSQLQELWLSGNNISSLSNESLQGLRQLRTLDLSWNQIKVLKPGWLSHLPALTTLN 444
Cdd:PLN00113 235 lTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

                        250       260
                 ....*....|....*....|....*..
gi 408684413 445 LLGTYLEYILGIQLQGPKMLRHLQLGS 471
Cdd:PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWS 341
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 287-498 5.18e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 49.66  E-value: 5.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 287 SLTGYSELRALDLGKNqiqnilengeIPGYKALEFLSLHDNHLQTLPT------RFLHTLPQLQKLNLSMNKLGPILE-- 358
Cdd:cd00116   31 EGNTLGEEAAKALASA----------LRPQPSLKELCLSLNETGRIPRglqsllQGLTKGCGLQELDLSDNALGPDGCgv 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 359 LPEGLFSTNLKVLDLSYNQ------------LCDVPHGALSLLsqlqelwLSGNNISSLSNESLQGL----RQLRTLDLS 422
Cdd:cd00116  101 LESLLRSSSLQELKLNNNGlgdrglrllakgLKDLPPALEKLV-------LGRNRLEGASCEALAKAlranRDLKELNLA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 423 WNQ-----IKVLKPGwLSHLPALTTLNLLGTYLEYILGIQLQG----PKMLRHLQLGSYPI--------LDIYPPWPPTL 485
Cdd:cd00116  174 NNGigdagIRALAEG-LKANCNLEVLDLNNNGLTDEGASALAEtlasLKSLEVLNLGDNNLtdagaaalASALLSPNISL 252

                        250
                 ....*....|....*...
gi 408684413 486 LSL-----EIQAESCIQF 498
Cdd:cd00116  253 LTLslscnDITDDGAKDL 270
LRR_8 pfam13855
Leucine rich repeat;
414-471 1.51e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.28  E-value: 1.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 408684413  414 RQLRTLDLSWNQIKVLKPGWLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGS 471
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSG 58
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 262-378 1.53e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 49.08  E-value: 1.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 262 DLTDSGLLHLHFLSLVGtgieKVPASLTGYSELRALDLGKNQIqnileNGEIP----GYKALEFLSLHDNHLQTLPTRFL 337
Cdd:PLN00113 258 NLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSL-----SGEIPelviQLQNLEILHLFSNNFTGKIPVAL 328

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 408684413 338 HTLPQLQKLNLSMNKLGPilELPEGLFS-TNLKVLDLSYNQL 378
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSG--EIPKNLGKhNNLTVLDLSTNNL 368
LRR_8 pfam13855
Leucine rich repeat;
319-378 1.43e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.59  E-value: 1.43e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 408684413  319 LEFLSLHDNHLQTLPTRFLHTLPQLQKLNLSMNKLGpilELPEGLFS--TNLKVLDLSYNQL 378
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT---TLSPGAFSglPSLRYLDLSGNRL 61
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 779-858 2.24e-04

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 42.74  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413  779 YDVFISYCEED-QAWVLEELVPVLEKappegEGLRLCLPARDFGIGNDRMESMIASMGKSRATLCVLTGQALASPWCNLE 857
Cdd:pfam01582   1 YDVFLSFRGSDtREWFVSHLLKELKQ-----KGIKLFIDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDE 75


                  .
gi 408684413  858 L 858
Cdd:pfam01582  76 L 76
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
280-564 4.64e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 43.92  E-value: 4.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 280 GIEKVPASLTgySELRALDLGKNQIQNILENGEipgyKALEFLSLHDNHLQTLPTrflhTLPQ-LQKLNLSMNKlgpILE 358
Cdd:PRK15370 189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPA----TLPDtIQEMELSINR---ITE 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 359 LPEGLFSTnLKVLdlsynqlcdvphgalsllsqlqelWLSGNNISSLSNESLQGlrqLRTLDLSWNQIKVLKpgwlSHLP 438
Cdd:PRK15370 256 LPERLPSA-LQSL------------------------DLFHNKISCLPENLPEE---LRYLSVYDNSIRTLP----AHLP 303

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 439 A-LTTLNLLGTYLEYILGIQlqgPKMLRHLQLGSYPILDIYPPWPPTLLSLEIQAEScIQFMIHSGQPflFLENLTLETS 517
Cdd:PRK15370 304 SgITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQ-ITVLPETLPP--TITTLDVSRN 377

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 408684413 518 ILLLKPDNITIHFPSLRRltlrgysfifSTSQLQRfFPQQLPlleHF 564
Cdd:PRK15370 378 ALTNLPENLPAALQIMQA----------SRNNLVR-LPESLP---HF 410
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 357-476 1.08e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 42.47  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 357 LELPEGLFSTNLKVLDLSYNQL----CDVPHGALSLLSQLQELWLSGNNISSLSNES----LQGLRQLRTLDLSWNQI-- 426
Cdd:COG5238  171 ISMAKALQNNSVETVYLGCNQIgdegIEELAEALTQNTTVTTLWLKRNPIGDEGAEIlaeaLKGNKSLTTLDLSNNQIgd 250

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 408684413 427 -------KVLKPGwlshlPALTTLNLLGTYLEY----ILGIQLQGPKMLRHLQLGSYPILD 476
Cdd:COG5238  251 egvialaEALKNN-----TTVETLYLSGNQIGAegaiALAKALQGNTTLTSLDLSVNRIGD 306
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
248-450 1.26e-03

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 42.84  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 248 LHSLILDGTPLKALDLTDSGLLHLHFLSLVGTGIEKVPASLTGY----SELRALDLGKNQIQNI-LENGEIPGYKAL--E 320
Cdd:PRK15387 244 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLwifgNQLTSLPVLPPGLQELsVSDNQLASLPALpsE 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 408684413 321 FLSL--HDNHLQTLPTrflhtLPQ-LQKLNLSMNKLGPILELPEGLFS---------------TNLKVLDLSYNQLCDVP 382
Cdd:PRK15387 324 LCKLwaYNNQLTSLPT-----LPSgLQELSVSDNQLASLPTLPSELYKlwaynnrltslpalpSGLKELIVSGNRLTSLP 398

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 408684413 383 hgalSLLSQLQELWLSGNNISSLSNESlqglRQLRTLDLSWNQIKVLkPGWLSHLPALTTLNLLGTYL 450
Cdd:PRK15387 399 ----VLPSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL 457
LRR_8 pfam13855
Leucine rich repeat;
292-353 1.74e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.50  E-value: 1.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 408684413  292 SELRALDLGKNQIQNIlENGEIPGYKALEFLSLHDNHLQTLPTRFLHTLPQLQKLNLSMNKL 353
Cdd:pfam13855   1 PNLRSLDLSNNRLTSL-DDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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