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Conserved domains on  [gi|42573251|ref|NP_974722|]
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argininosuccinate lyase [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
A_thal_3526 super family cl09915
Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins ...
 17-49 6.93e-13

Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.


The actual alignment was detected with superfamily member pfam09713:

Pssm-ID: 415800  Cd Length: 51  Bit Score: 56.44  E-value: 6.93e-13
                         10        20        30
                 ....*....|....*....|....*....|...
gi 42573251   17 HLIEECIVFNMGKEECMDALFKHANIKPIITST 49
Cdd:pfam09713  1 NLIERCLQLYMSKEETVRALQKQANIQPVFTST 33
 
Name Accession Description Interval E-value
A_thal_3526 pfam09713
Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins ...
 17-49 6.93e-13

Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.


Pssm-ID: 401595  Cd Length: 51  Bit Score: 56.44  E-value: 6.93e-13
                         10        20        30
                 ....*....|....*....|....*....|...
gi 42573251   17 HLIEECIVFNMGKEECMDALFKHANIKPIITST 49
Cdd:pfam09713  1 NLIERCLQLYMSKEETVRALQKQANIQPVFTST 33
A_thal_3526 TIGR01589
uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized ...
 12-49 2.93e-12

uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.


Pssm-ID: 130650  Cd Length: 57  Bit Score: 54.83  E-value: 2.93e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 42573251   12 IHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITST 49
Cdd:TIGR01589  1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRF 38
 
Name Accession Description Interval E-value
A_thal_3526 pfam09713
Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins ...
 17-49 6.93e-13

Plant protein 1589 of unknown function (A_thal_3526); This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown.


Pssm-ID: 401595  Cd Length: 51  Bit Score: 56.44  E-value: 6.93e-13
                         10        20        30
                 ....*....|....*....|....*....|...
gi 42573251   17 HLIEECIVFNMGKEECMDALFKHANIKPIITST 49
Cdd:pfam09713  1 NLIERCLQLYMSKEETVRALQKQANIQPVFTST 33
A_thal_3526 TIGR01589
uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized ...
 12-49 2.93e-12

uncharacterized plant-specific domain TIGR01589; This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.


Pssm-ID: 130650  Cd Length: 57  Bit Score: 54.83  E-value: 2.93e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 42573251   12 IHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITST 49
Cdd:TIGR01589  1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRF 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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