rab5 GDP/GTP exchange factor [Danio rerio]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
VPS9 | pfam02204 | Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). ... |
280-380 | 1.21e-33 | |||
Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It activates Rab GTPases by stimulating the release of GDP and allowing GTP to bind. : Pssm-ID: 460489 Cd Length: 104 Bit Score: 122.70 E-value: 1.21e-33
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DUF5601 | pfam18151 | Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 ... |
167-230 | 8.92e-19 | |||
Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 present in Homo sapiens. RABEX, also known as Rab GTPase exchange factors, regulate endocytic trafficking through activation of the Rab families RAB5, RAB21 and RAB22. The domain is helical in nature. : Pssm-ID: 465668 Cd Length: 65 Bit Score: 80.33 E-value: 8.92e-19
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zf-A20 | pfam01754 | A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ... |
17-40 | 1.23e-10 | |||
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. : Pssm-ID: 460313 Cd Length: 24 Bit Score: 55.97 E-value: 1.23e-10
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Name | Accession | Description | Interval | E-value | |||
VPS9 | pfam02204 | Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). ... |
280-380 | 1.21e-33 | |||
Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It activates Rab GTPases by stimulating the release of GDP and allowing GTP to bind. Pssm-ID: 460489 Cd Length: 104 Bit Score: 122.70 E-value: 1.21e-33
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VPS9 | smart00167 | Domain present in VPS9; Domain present in yeast vacuolar sorting protein 9 and other proteins. |
288-393 | 9.86e-29 | |||
Domain present in VPS9; Domain present in yeast vacuolar sorting protein 9 and other proteins. Pssm-ID: 128469 Cd Length: 117 Bit Score: 109.85 E-value: 9.86e-29
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DUF5601 | pfam18151 | Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 ... |
167-230 | 8.92e-19 | |||
Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 present in Homo sapiens. RABEX, also known as Rab GTPase exchange factors, regulate endocytic trafficking through activation of the Rab families RAB5, RAB21 and RAB22. The domain is helical in nature. Pssm-ID: 465668 Cd Length: 65 Bit Score: 80.33 E-value: 8.92e-19
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zf-A20 | pfam01754 | A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ... |
17-40 | 1.23e-10 | |||
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. Pssm-ID: 460313 Cd Length: 24 Bit Score: 55.97 E-value: 1.23e-10
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ZnF_A20 | smart00259 | A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ... |
16-40 | 1.05e-06 | |||
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation. Pssm-ID: 128555 Cd Length: 26 Bit Score: 44.88 E-value: 1.05e-06
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Name | Accession | Description | Interval | E-value | |||
VPS9 | pfam02204 | Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). ... |
280-380 | 1.21e-33 | |||
Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It activates Rab GTPases by stimulating the release of GDP and allowing GTP to bind. Pssm-ID: 460489 Cd Length: 104 Bit Score: 122.70 E-value: 1.21e-33
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VPS9 | smart00167 | Domain present in VPS9; Domain present in yeast vacuolar sorting protein 9 and other proteins. |
288-393 | 9.86e-29 | |||
Domain present in VPS9; Domain present in yeast vacuolar sorting protein 9 and other proteins. Pssm-ID: 128469 Cd Length: 117 Bit Score: 109.85 E-value: 9.86e-29
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DUF5601 | pfam18151 | Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 ... |
167-230 | 8.92e-19 | |||
Domain of unknown function (DUF5601); This domain is found in the catalytic core RABEX-5 present in Homo sapiens. RABEX, also known as Rab GTPase exchange factors, regulate endocytic trafficking through activation of the Rab families RAB5, RAB21 and RAB22. The domain is helical in nature. Pssm-ID: 465668 Cd Length: 65 Bit Score: 80.33 E-value: 8.92e-19
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zf-A20 | pfam01754 | A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding ... |
17-40 | 1.23e-10 | |||
A20-like zinc finger; The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. Pssm-ID: 460313 Cd Length: 24 Bit Score: 55.97 E-value: 1.23e-10
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ZnF_A20 | smart00259 | A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger ... |
16-40 | 1.05e-06 | |||
A20-like zinc fingers; A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation. Pssm-ID: 128555 Cd Length: 26 Bit Score: 44.88 E-value: 1.05e-06
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Blast search parameters | ||||
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