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Conserved domains on  [gi|30683668|ref|NP_850109|]
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histone deacetylase-related / HD-like protein [Arabidopsis thaliana]

Protein Classification

nucleoplasmin-like domain-containing protein( domain architecture ID 16050427)

nucleoplasmin-like (NPL) domain-containing protein similar to Arabidopsis thaliana histone deacetylases (HDTs) and Dictyostelium discoideum 32 kDa heat shock protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NPL pfam17800
Nucleoplasmin-like domain;
2-71 3.66e-07

Nucleoplasmin-like domain;


:

Pssm-ID: 465511  Cd Length: 90  Bit Score: 46.06  E-value: 3.66e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30683668     2 VHASQVTLGDVEKvkkdETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISH--NSTSSVYLIGY 71
Cdd:pfam17800  20 LHITNAALGPSAK----PETVVKVKVDDEEEEFVLCTLTpGKVEQQPLDLVFSEGEEVTFsvKGKNTVHLTGY 88
 
Name Accession Description Interval E-value
NPL pfam17800
Nucleoplasmin-like domain;
2-71 3.66e-07

Nucleoplasmin-like domain;


Pssm-ID: 465511  Cd Length: 90  Bit Score: 46.06  E-value: 3.66e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30683668     2 VHASQVTLGDVEKvkkdETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISH--NSTSSVYLIGY 71
Cdd:pfam17800  20 LHITNAALGPSAK----PETVVKVKVDDEEEEFVLCTLTpGKVEQQPLDLVFSEGEEVTFsvKGKNTVHLTGY 88
 
Name Accession Description Interval E-value
NPL pfam17800
Nucleoplasmin-like domain;
2-71 3.66e-07

Nucleoplasmin-like domain;


Pssm-ID: 465511  Cd Length: 90  Bit Score: 46.06  E-value: 3.66e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30683668     2 VHASQVTLGDVEKvkkdETFAVYVKIGDDENGFMIGNLS-QKFPQFSIDLYLGHEFEISH--NSTSSVYLIGY 71
Cdd:pfam17800  20 LHITNAALGPSAK----PETVVKVKVDDEEEEFVLCTLTpGKVEQQPLDLVFSEGEEVTFsvKGKNTVHLTGY 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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