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Conserved domains on  [gi|29653586|ref|NP_819278|]
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30S ribosomal protein S7 [Coxiella burnetii RSA 493]

Protein Classification

30S ribosomal protein S7( domain architecture ID 10792463)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Gene Symbol:  rpsG
Gene Ontology:  GO:0003735|GO:0015935|GO:0019843
PubMed:  11160889

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-191 2.12e-91

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439819  Cd Length: 156  Bit Score: 263.46  E-value: 2.12e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrsl 80
Cdd:COG0049   1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGED----------------------- 57

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  81 gdirtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:COG0049  58 ------------PLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELL 125

                       170       180       190
                ....*....|....*....|....*....|.
gi 29653586 161 DAVEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:COG0049 126 DASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
 
Name Accession Description Interval E-value
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-191 2.12e-91

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 263.46  E-value: 2.12e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrsl 80
Cdd:COG0049   1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGED----------------------- 57

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  81 gdirtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:COG0049  58 ------------PLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELL 125

                       170       180       190
                ....*....|....*....|....*....|.
gi 29653586 161 DAVEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:COG0049 126 DASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-191 2.48e-91

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 263.50  E-value: 2.48e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKrvqnKSGEQgdgdgesggkaggikkrsl 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEE----KTGKD------------------- 57

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   81 gdirtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:PRK05302  58 ------------PLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELL 125

                        170       180       190
                 ....*....|....*....|....*....|.
gi 29653586  161 DAVEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:PRK05302 126 DAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-184 7.09e-69

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 206.14  E-value: 7.09e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  13 LPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAral 92
Cdd:cd14869   2 LPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKK-------------------------------TGKDP--- 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  93 aLETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKK 172
Cdd:cd14869  48 -LEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKK 126

                       170
                ....*....|..
gi 29653586 173 REDVHRMAKANQ 184
Cdd:cd14869 127 KEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-191 1.68e-67

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 203.30  E-value: 1.68e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586     3 RRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrslgd 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGED------------------------- 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    83 irtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDA 162
Cdd:TIGR01029  56 ----------PLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDA 125

                         170       180
                  ....*....|....*....|....*....
gi 29653586   163 VEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:TIGR01029 126 ANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-183 2.93e-66

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 199.14  E-value: 2.93e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    18 FHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAralaLETF 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK-------------------------------TGKNP----LEVF 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    98 KGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKKREDVH 177
Cdd:pfam00177  46 VKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETH 125


                  ....*.
gi 29653586   178 RMAKAN 183
Cdd:pfam00177 126 RMAEAN 131
 
Name Accession Description Interval E-value
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-191 2.12e-91

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 263.46  E-value: 2.12e-91
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrsl 80
Cdd:COG0049   1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGED----------------------- 57

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  81 gdirtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:COG0049  58 ------------PLEVFEKALENVKPLVEVKSRRVGGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELL 125

                       170       180       190
                ....*....|....*....|....*....|.
gi 29653586 161 DAVEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:COG0049 126 DASNNRGAAVKKREDTHKMAEANKAFAHYRW 156
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-191 2.48e-91

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 263.50  E-value: 2.48e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKrvqnKSGEQgdgdgesggkaggikkrsl 80
Cdd:PRK05302   1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEE----KTGKD------------------- 57

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   81 gdirtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:PRK05302  58 ------------PLEVFEKALENVKPVVEVKSRRVGGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELL 125

                        170       180       190
                 ....*....|....*....|....*....|.
gi 29653586  161 DAVEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:PRK05302 126 DAANNRGAAVKKREDTHRMAEANKAFAHYRW 156
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 13-184 7.09e-69

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 206.14  E-value: 7.09e-69
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  13 LPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAral 92
Cdd:cd14869   2 LPDPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKK-------------------------------TGKDP--- 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  93 aLETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKK 172
Cdd:cd14869  48 -LEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPERRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKK 126

                       170
                ....*....|..
gi 29653586 173 REDVHRMAKANQ 184
Cdd:cd14869 127 KEDTHKMAEANK 138
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-191 1.68e-67

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 203.30  E-value: 1.68e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586     3 RRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrslgd 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGED------------------------- 55

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    83 irtdenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDA 162
Cdd:TIGR01029  56 ----------PLEVFEQALENVKPLVEVKSRRVGGATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDA 125

                         170       180
                  ....*....|....*....|....*....
gi 29653586   163 VEGRGGAIKKREDVHRMAKANQAFAHYKW 191
Cdd:TIGR01029 126 ANNTGAAIKKREDTHRMAEANKAFAHYRW 154
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-183 2.93e-66

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 199.14  E-value: 2.93e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    18 FHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAralaLETF 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEK-------------------------------TGKNP----LEVF 45

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    98 KGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKKREDVH 177
Cdd:pfam00177  46 VKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETH 125


                  ....*.
gi 29653586   178 RMAKAN 183
Cdd:pfam00177 126 RMAEAN 131
rps7 CHL00053
ribosomal protein S7
 1-190 4.43e-56

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 174.30  E-value: 4.43e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586    1 MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrsl 80
Cdd:CHL00053   1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQK--------------------------- 53

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   81 gdirTDENAralaLETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEIL 160
Cdd:CHL00053  54 ----TEKNP----LSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELV 125

                        170       180       190
                 ....*....|....*....|....*....|
gi 29653586  161 DAVEGRGGAIKKREDVHRMAKANQAFAHYK 190
Cdd:CHL00053 126 DAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 9-189 1.71e-53

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 167.45  E-value: 1.71e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   9 KRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKsgeqgdgdgesggkaggikkrslgdirtden 88
Cdd:cd14871   1 KRPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQD------------------------------- 49

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  89 aralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGG 168
Cdd:cd14871  50 ----PLEVLEQAIRNVTPLVEVKARRVGGSTYQVPVEVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGN 125

                       170       180
                ....*....|....*....|.
gi 29653586 169 AIKKREDVHRMAKANQAFAHY 189
Cdd:cd14871 126 AIRKKEETHRMAEANKAFAHF 146
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 5-190 5.68e-37

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 126.97  E-value: 5.68e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   5 KAAPKRETlpDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVaKRVQNksgeqgdgdgESGGKAGGIKKRSlgdIR 84
Cdd:cd14870  35 KAAKSDET--SSVFYDPLVSKFINMMMKKGNKELAREIVEKTLENI-KRIQL----------EKYHKATDEEKES---IE 98

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  85 TDenaralALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYA-NKRNEKTMVLRLAHEILDAV 163
Cdd:cd14870  99 LN------PLVIFHKAVENCKPLLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEACrEKKRKIRFPEKLARELLDAS 172

                       170       180
                ....*....|....*....|....*..
gi 29653586 164 EGRGGAIKKREDVHRMAKANQAFAHYK 190
Cdd:cd14870 173 NNQGKVVKKKQELHKQCEANRAYAHYR 199
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 22-184 1.37e-30

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 108.50  E-value: 1.37e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  22 LLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKSgeqgdgdgesggkaggikkrslgdirtdenaralaLETFKGAL 101
Cdd:cd00323   3 LLKKFINILMKDGKKSKAEKIFSKALKILKKKTKKNP-----------------------------------LKLLVEAI 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586 102 DKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKKREDVHRMAK 181
Cdd:cd00323  48 ENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSLAIKWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAE 127


                ...
gi 29653586 182 ANQ 184
Cdd:cd00323 128 ANR 130
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 20-191 6.13e-28

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 102.07  E-value: 6.13e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  20 SELLAKFINAVMRNGKKSVAEKIVYGALDVVAkrvQNKSGEQGDgdgesggkaggikkrslgdirtdenaralALETFKG 99
Cdd:cd15484   1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLK---QKQSAQTED-----------------------------VLVILVT 48

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586 100 ALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLR------LAHEILDAVEGRGGAIKKR 173
Cdd:cd15484  49 AVENVKPSFEVRKVRIAGTTQLIPAALSPNKQETLAIRWILEAAKKKQRKQSKKRysfaycLADEILDASKKQGKARQKR 128

                       170
                ....*....|....*...
gi 29653586 174 EDVHRMAKANQAFAHYKW 191
Cdd:cd15484 129 DELHKLAEANRSLAHYRW 146
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 1-183 2.03e-24

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 93.02  E-value: 2.03e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   1 MARRKAAPKREtlpDPLFHsellaKFINAVMRNGKKSVAEKIVYGALDVvakrvqnksgeqgdgdgesggkaggikkrsl 80
Cdd:cd14868  11 PAQFLNIPPRE---DPLLE-----QLTNLIMKHGKKAKAQRIVSRALLH------------------------------- 51

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  81 gdIRTDENARALALetFKGALDKVMPNVEVKSRRVGGSTYQVPVEI--RMARRQALarRWLVEYANKRNEKTMVLRLAHE 158
Cdd:cd14868  52 --IHTLTRADPLPL--LRQAIDSAAPLVKIKSQKKGAKNVQVPVPLneRQRRRKAI--KWILEASDKRPGKSFSERLAEE 125

                       170       180
                ....*....|....*....|....*
gi 29653586 159 ILDAVEGRGGAIKKREDVHRMAKAN 183
Cdd:cd14868 126 IIAVVEGTSSALEKKEQVHKLAVAN 150
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 26-183 8.48e-09

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 52.56  E-value: 8.48e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  26 FINAVMR----NGKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAralaLETFKGAL 101
Cdd:cd14867  53 LINSLMMhgrnTGKKLMAYRIVKHAFEIIHLL-------------------------------TGKNP----IQVLVDAI 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586 102 DKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANK---RNEKTMVLRLAHEILDAVEG--RGGAIKKREDV 176
Cdd:cd14867  98 ENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREaafRNIKSIAECLADELINAAKGssNSYAIKKKDEL 177


                ....*..
gi 29653586 177 HRMAKAN 183
Cdd:cd14867 178 ERVAKSN 184
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 25-182 1.50e-06

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 46.43  E-value: 1.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586   25 KFINAVMRN----GKKSVAEKIVYGALDVVAKRvqnksgeqgdgdgesggkaggikkrslgdirTDENAralaLETFKGA 100
Cdd:PRK04027  62 RLINKLMRTerntGKKQKAYNIVKEAFEIIEKR-------------------------------TKQNP----IQVLVDA 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29653586  101 LDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANK---RNEKTMVLRLAHEILDAVEG--RGGAIKKRED 175
Cdd:PRK04027 107 IENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQasfKNKKSIEEALAEEIIAAANNdpKSYAVRKKEE 186


                 ....*..
gi 29653586  176 VHRMAKA 182
Cdd:PRK04027 187 IERVAKS 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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