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Conserved domains on  [gi|28261722|ref|NP_783237|]
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NADH dehydrogenase subunit 3 (chloroplast) [Atropa belladonna]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 3( domain architecture ID 10000018)

NAD(P)H-quinone oxidoreductase subunit 3 (NDH-C) is part of the NDH-1 complex that catalyzes the transfer of electrons from NAD(P)H to quinone in a respiratory and/or photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.53e-75

NADH dehydrogenase subunit 3


:

Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.53e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 28261722   81 PWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.53e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.53e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 28261722   81 PWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-119 1.08e-38

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 126.00  E-value: 1.08e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722  12 AFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV 91
Cdd:COG0838  10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 28261722  92 SVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 1.01e-37

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.53  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    25 FFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 28261722   105 IIGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 3.53e-75

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 218.32  E-value: 3.53e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 28261722   81 PWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-120 9.31e-45

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 141.54  E-value: 9.31e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    1 MFLLYEYDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:PRK06602   2 TEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 28261722   81 PWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:PRK06602  82 PWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-119 1.08e-38

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 126.00  E-value: 1.08e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722  12 AFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV 91
Cdd:COG0838  10 IFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                        90       100
                ....*....|....*....|....*...
gi 28261722  92 SVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:COG0838  90 FGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 1.01e-37

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.53  E-value: 1.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    25 FFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 28261722   105 IIGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
13-119 3.45e-35

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 117.15  E-value: 3.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   13 FLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVS 92
Cdd:PRK07756  15 FLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLF 94

                         90       100
                 ....*....|....*....|....*..
gi 28261722   93 VFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:PRK07756  95 ALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
10-119 1.71e-22

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 85.10  E-value: 1.71e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   10 FWAFLIISILvpilAFFISGVLAPISKGPEKLSTYESGIEPMGDAwLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK08489  21 FVAFFLTTRL----ARFISRKLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLL 95

                         90       100       110
                 ....*....|....*....|....*....|
gi 28261722   90 GVSVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:PRK08489  96 GLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 27-119 3.96e-20

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 78.95  E-value: 3.96e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   27 ISGVLAPISKGPEKLSTYESGIEPMGDAW--LQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLIL 104
Cdd:PRK07928  24 VASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTV 103

                         90
                 ....*....|....*
gi 28261722  105 IIGLVYAWRKGALEW 119
Cdd:PRK07928 104 FVAYAYVWRRGGLEW 118
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 13-119 1.02e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 67.33  E-value: 1.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   13 FLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLG 90
Cdd:MTH00069   5 MLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTPT 84

                         90       100
                 ....*....|....*....|....*....
gi 28261722   91 VSVFIEAFIFVLiLIIGLVYAWRKGALEW 119
Cdd:MTH00069  85 NTLFWSTLILIL-LTLGLIYEWIQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-120 1.80e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 66.80  E-value: 1.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    9 FFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF-D 87
Cdd:MTH00148   4 ILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLgS 83

                         90       100       110
                 ....*....|....*....|....*....|...
gi 28261722   88 VLGVSVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:MTH00148  84 SFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 14-119 1.94e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 66.44  E-value: 1.94e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLgV 91
Cdd:MTH00113   7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-T 85

                         90       100
                 ....*....|....*....|....*...
gi 28261722   92 SVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00113  86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 14-120 6.87e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 65.26  E-value: 6.87e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGP-EKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGV 91
Cdd:MTH00012   8 MMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSK 87

                         90       100
                 ....*....|....*....|....*....
gi 28261722   92 SVFIEAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:MTH00012  88 TVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 13-119 1.52e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 64.31  E-value: 1.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   13 FLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVS 92
Cdd:MTH00018   6 LLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPF 85

                         90       100
                 ....*....|....*....|....*..
gi 28261722   93 VFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00018  86 GFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 13-119 2.02e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 64.03  E-value: 2.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   13 FLIISILVPILAFFISGVLAPISK-GPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV 91
Cdd:MTH00161   5 ILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNM 84

                         90       100
                 ....*....|....*....|....*....
gi 28261722   92 SVF-IEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00161  85 MSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 14-119 2.47e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 63.96  E-value: 2.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSV 93
Cdd:MTH00055  12 LLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG 91

                         90       100
                 ....*....|....*....|....*.
gi 28261722   94 FIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00055  92 FWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 14-119 1.10e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 62.24  E-value: 1.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAmsfDVLG- 90
Cdd:MTH00136   8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLplPWG---DQLPs 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 28261722   91 -VSVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00136  85 pLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 13-119 1.75e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 61.54  E-value: 1.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   13 FLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGV 91
Cdd:MTH00042   7 FLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpPATLITNPS 86

                         90       100
                 ....*....|....*....|....*...
gi 28261722   92 SVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00042  87 TLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 7-119 2.39e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 61.49  E-value: 2.39e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    7 YDFFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:MTH00030  10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                         90       100       110
                 ....*....|....*....|....*....|...
gi 28261722   87 DVLGVSVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00030  90 NQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-120 4.03e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 60.72  E-value: 4.03e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGV 91
Cdd:MTH00106   7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQTNNLNT 86

                         90       100
                 ....*....|....*....|....*....
gi 28261722   92 SVFIeAFIFVLILIIGLVYAWRKGALEWS 120
Cdd:MTH00106  87 MLTM-ALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 14-119 1.15e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 56.92  E-value: 1.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPIS-KGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMS-FDVLGV 91
Cdd:MTH00202   8 SILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSK 87

                         90       100
                 ....*....|....*....|....*...
gi 28261722   92 SVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00202  88 GGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-119 5.94e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 54.90  E-value: 5.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722    9 FFWAFLIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00203   3 LIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQL 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 28261722   89 LGVSVFIeAFIFVLILIIGLVYAWRKGALEW 119
Cdd:MTH00203  83 SSLSLLL-AFLFLILLTLGLIYEWLQGGLEW 112
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 60-119 2.16e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 51.74  E-value: 2.16e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   60 IRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIIGLVYAWRKGALEW 119
Cdd:PRK06432  83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 14-113 1.01e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 38.82  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28261722   14 LIISILVPILAFFISGVLAPISKGPEKLSTYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSV 93
Cdd:PRK06073  14 IVLGLAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDL 93

                         90       100
                 ....*....|....*....|
gi 28261722   94 FIEAFIFVLILIIGLVYAWR 113
Cdd:PRK06073  94 LLLIVVALVLMYPVLYYAYK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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