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Conserved domains on  [gi|24642740|ref|NP_728056|]
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uncharacterized protein Dmel_CG32564 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
165-319 4.56e-11

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 64.51  E-value: 4.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQA-APAVTYSAPAPAPAVTYSAPAPAPAVTYSA 243
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
 
Name Accession Description Interval E-value
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
165-319 4.56e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 64.51  E-value: 4.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQA-APAVTYSAPAPAPAVTYSAPAPAPAVTYSA 243
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 171-293 5.97e-05

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 43.60  E-value: 5.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   171 VTYSAPAPAVSYSAPAPAVTYSA-PAPAPAVT---YSAPAPVVR--VQAAPAVTYSApAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:pfam11018  41 ITNNVYTPKTLYSAPAPVVTKSAyAAPAPVVTtyaHAAPAPVVAktVYAAPAVVVYA-APAPVVAKTVTYAAPAVHYAAP 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 24642740   245 APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPV 293
Cdd:pfam11018 120 APVVAKTVYAAPAVQHYAAPAPVEAAAHAAPVVAAAPAAYVKYSPAVVV 168
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
163-294 4.15e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 39.35  E-value: 4.15e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740 163 SYSAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYS 242
Cdd:COG3469  86 AAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTT 165

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 24642740 243 APAPAPVvrvqAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVP 294
Cdd:COG3469 166 TSTTTTT----TSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
 
Name Accession Description Interval E-value
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
165-319 4.56e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 64.51  E-value: 4.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQA-APAVTYSAPAPAPAVTYSAPAPAPAVTYSA 243
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
rne PRK10811
ribonuclease E; Reviewed
 162-322 3.51e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 61.98  E-value: 3.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   162 VSYSAPAPAVTYSAPAPAVSYSA-PAPAVTYSAPAPAP-AVTYSAPAPVVRVQAAPAVTYSAPAPAPAVtysapaPAPAV 239
Cdd:PRK10811  882 VVSAPVVEAVAEVVEEPVVVAEPqPEEVVVVETTHPEViAAPVTEQPQVITESDVAVAQEVAEHAEPVV------EPQDE 955

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   240 TYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTysAPAPVPVVRYSAPAPAPISYAPAPvSYAPQP 319
Cdd:PRK10811  956 TADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA--PAQVPEATVEHNHATAPMTRAPAP-EYVPEA 1032


                  ...
gi 24642740   320 QSQ 322
Cdd:PRK10811 1033 PRH 1035
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 187-312 1.32e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 60.11  E-value: 1.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  187 PAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAP- 265
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAv 445

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 24642740  266 AVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAP 312
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 166-282 4.68e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 58.19  E-value: 4.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVvrvqAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPA 245
Cdd:PRK14951 384 PEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV----AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 24642740  246 PAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPA 282
Cdd:PRK14951 460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
166-322 5.28e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 57.96  E-value: 5.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPA 245
Cdd:PRK12323 398 APAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAA 477

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  246 PAPVVRVQAAPAV--------------TYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPA 311
Cdd:PRK12323 478 AAPARAAPAAAPApadddpppweelppEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAAT 557

                        170
                 ....*....|.
gi 24642740  312 PVSYAPQPQSQ 322
Cdd:PRK12323 558 EPVVAPRPPRA 568
rne PRK10811
ribonuclease E; Reviewed
 166-313 2.11e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.59  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   166 APAPAVTYSAPAPAVSYSAPAPAVTySAPAPAPAVTYSAPAP------------VVRVQAAPAVTYSAPAPAPAVT---Y 230
Cdd:PRK10811  877 AAVEPVVSAPVVEAVAEVVEEPVVV-AEPQPEEVVVVETTHPeviaapvteqpqVITESDVAVAQEVAEHAEPVVEpqdE 955

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   231 SAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRysAPAPApisYAP 310
Cdd:PRK10811  956 TADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTR--APAPE---YVP 1030


                  ...
gi 24642740   311 APV 313
Cdd:PRK10811 1031 EAP 1033
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 166-292 6.07e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 54.72  E-value: 6.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAVSYSAPAP-AVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK14951 372 AAAPAEKKTPARPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 24642740  245 APAPVVRVQAAPAVTysAPAPAVTYSAPAPAvtysgPAPAVTYSAPAP 292
Cdd:PRK14951 452 PAQAAPETVAIPVRV--APEPAVASAAPAPA-----AAPAAARLTPTE 492
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 170-336 7.53e-08

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 54.71  E-value: 7.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   170 AVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPapVVRVQAAPAVTYSAPAPAPAVTYSAPAP---APAVTYSAPAP 246
Cdd:PRK10263  321 AVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQP--TVAWQPVPGPQTGEPVIAPAPEGYPQQSqyaQPAVQYNEPLQ 398

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   247 APVVRVQAAPAVTYSAPAPAVTYS-APAPAVTYSGPAPAVTYSAP-------------APVPVVRYSAPAPAPIsyAPAP 312
Cdd:PRK10263  399 QPVQPQQPYYAPAAEQPAQQPYYApAPEQPAQQPYYAPAPEQPVAgnawqaeeqqstfAPQSTYQTEQTYQQPA--AQEP 476

                         170       180
                  ....*....|....*....|....
gi 24642740   313 VSYAPQPQSQQVVKTIKLIVDEDR 336
Cdd:PRK10263  477 LYQQPQPVEQQPVVEPEPVVEETK 500
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 187-314 1.88e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 53.33  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  187 PAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP------APAPVVRVQAAPAVTY 260
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETtsqllaARQQLQRAQGATKAKK 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740  261 SAPAPAVTySAPAPAV--TYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVS 314
Cdd:PRK07994 441 SEPAAASR-ARPVNSAleRLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVA 495
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 167-297 1.89e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.45  E-value: 1.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  167 PAPAVTYSAPAPAVSYSAPAPAvtysAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAP 246
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAA----APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 24642740  247 APVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVR 297
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
PHA03247 PHA03247
large tegument protein UL36; Provisional
 166-319 3.00e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 3.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   166 APAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPA 245
Cdd:PHA03247 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24642740   246 PAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:PHA03247 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 192-339 5.90e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.40  E-value: 5.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  192 SAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSA 271
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  272 PAPAVTYSGPAPAV--TYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQVVKTIKLIVDEDRAPA 339
Cdd:PRK07994 442 EPAAASRARPVNSAleRLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 219-348 5.92e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 5.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  219 YSAPAPAPAVTySAPAPAPAvtySAPAPAPVVRVQAAPAvtySAPAPAVTYSAPAPAVTYSGPAPAvtySAPAPVPVVRY 298
Cdd:PRK14951 368 AAAEAAAPAEK-KTPARPEA---AAPAAAPVAQAAAAPA---PAAAPAAAASAPAAPPAAAPPAPV---AAPAAAAPAAA 437

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24642740  299 SAPAPAPISYAPAPVSYAPQPQSQQVVKTIKLIVDEDRAPAQVYGPPAVE 348
Cdd:PRK14951 438 PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487
PHA03247 PHA03247
large tegument protein UL36; Provisional
 167-319 6.71e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 6.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   167 PAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTySAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAP 246
Cdd:PHA03247 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALP-AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP 2780

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24642740   247 APVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVpvvrySAPAPAPISYAPAPVSYAPQP 319
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP-----LPPPTSAQPTAPPPPPGPPPP 2848
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 165-312 8.16e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.02  E-value: 8.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPA-PAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTySA 243
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAaPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK-SE 442

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAvtySGPAPAVTYSAPAPVPVVRYSAPA--PAPISYAPAP 312
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPA---KKEAYRWKATNPVEVKKEPVATPKalKKALEHEKTP 510
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
166-325 8.62e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.39  E-value: 8.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAvtySAPAPAPAvtysapAPAPAVTYSAPA 245
Cdd:PRK07003 357 AFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAG---AALAPKAA------AAAAATRAEAPP 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  246 PAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQVV 325
Cdd:PRK07003 428 AAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507
PHA03247 PHA03247
large tegument protein UL36; Provisional
 165-345 1.55e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPaPAPAVTYSAPAPVVRVqAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   245 APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYS------APAPAPISYAPAPVSYAPQ 318
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrppsrSPAAKPAAPARPPVRRLAR 2888

                         170       180
                  ....*....|....*....|....*..
gi 24642740   319 PQSQQVVKTIKLIVDEDRAPAQVYGPP 345
Cdd:PHA03247 2889 PAVSRSTESFALPPDQPERPPQPQAPP 2915
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 165-323 1.90e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.98  E-value: 1.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTySAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK07764 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW-PAKAGGAAPAAPPPAPAPAAPAAPA 694

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24642740  245 APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQ 323
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 202-327 2.14e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 2.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  202 YSAPAPVVRVQAAPA-VTYSAPAPAP-AVTYSAPAPAPAVTYSAPAP-APVVRVQAAPAvtySAPAPAVTYSAPAPAVTY 278
Cdd:PRK14951 368 AAAEAAAPAEKKTPArPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPaAPPAAAPPAPV---AAPAAAAPAAAPAAAPAA 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24642740  279 SGPAPAVTY-SAPAPVPVVRYSAPAPAPISYAPAPvsyAPQPQSQQVVKT 327
Cdd:PRK14951 445 VALAPAPPAqAAPETVAIPVRVAPEPAVASAAPAP---AAAPAAARLTPT 491
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
165-319 2.21e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 49.85  E-value: 2.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAvtysaPAPAPAVTYSAP 244
Cdd:PRK07003 387 AAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPV-----PAKANARASADS 461

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24642740  245 APAPVVRVQAAPAVTYSAPA----PAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPisyAPAPVSYAPQP 319
Cdd:PRK07003 462 RCDERDAQPPADSGSASAPAsdapPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA---PPAPEARPPTP 537
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 169-312 2.35e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 2.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  169 PAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAP 248
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24642740  249 VVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAP 312
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKAL 504
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 178-267 3.30e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 3.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   178 PAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPA 257
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

                          90
                  ....*....|
gi 24642740   258 VTYSAPAPAV 267
Cdd:PRK12270  118 TPLRGAAAAV 127
PHA03247 PHA03247
large tegument protein UL36; Provisional
 165-312 3.53e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 3.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAP-------APAPAVTYSAPAPVVRVQAAPAVTYSA-----PAPAPAVTYSA 232
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrppsRSPAAKPAAPARPPVRRLARPAVSRSTesfalPPDQPERPPQP 2911

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   233 PAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAP 312
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991
PHA03247 PHA03247
large tegument protein UL36; Provisional
 168-345 4.05e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 4.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   168 APAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPA-VTYSAPAPAPAVTYSAPAP 246
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAaVLAPAAALPPAASPAGPLP 2829

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   247 APVVRVQAAPAVTysaPAPAVTYSAPAPAVTYSGP--------APAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQ 318
Cdd:PHA03247 2830 PPTSAQPTAPPPP---PGPPPPSLPLGGSVAPGGDvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                         170       180
                  ....*....|....*....|....*..
gi 24642740   319 PQSQQVVKTIKLIVDEDRAPAQVYGPP 345
Cdd:PHA03247 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPP 2933
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 167-259 4.88e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 48.73  E-value: 4.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   167 PAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAvtySAPAP 246
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA---AAAVE 114

                          90
                  ....*....|...
gi 24642740   247 APVVRVQAAPAVT 259
Cdd:PRK12270  115 DEVTPLRGAAAAV 127
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
162-322 6.84e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 6.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  162 VSYSAPAPAVTySAPAPAVSYSAPAPAVTYSAPAP---------APAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSA 232
Cdd:PRK07003 376 VAGAVPAPGAR-AAAAVGASAVPAVTAVTGAAGAAlapkaaaaaAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKAN 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  233 PAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAP-APAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPA 311
Cdd:PRK07003 455 ARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPrAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARP 534

                        170
                 ....*....|.
gi 24642740  312 PVSYAPQPQSQ 322
Cdd:PRK07003 535 PTPAAAAPAAR 545
flhF PRK06995
flagellar biosynthesis protein FlhF;
203-320 7.97e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 47.65  E-value: 7.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  203 SAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPvvRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPA 282
Cdd:PRK06995  49 AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL--TAQREQLVARAAAPAAPEAQAPAAPAERAAAE 126

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 24642740  283 PAVTYSAPAPVPVVRysAPAPAPISYAPAPVSYAPQPQ 320
Cdd:PRK06995 127 NAARRLARAAAAAPR--PRVPADAAAAVADAVKARIER 162
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 165-325 1.14e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTY----SAPAPAPAVTYSAPAPAPAVT 240
Cdd:PRK07764 620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGgaapAAPPPAPAPAAPAAPAGAAPA 699

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  241 YSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQ 320
Cdd:PRK07764 700 QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779


                 ....*
gi 24642740  321 SQQVV 325
Cdd:PRK07764 780 SEEEE 784
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 165-277 1.46e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAvtySAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK07764 404 AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA---PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480

                         90       100       110
                 ....*....|....*....|....*....|...
gi 24642740  245 APAPVvrVQAAPAVTYSAPAPAVTYSAPAPAVT 277
Cdd:PRK07764 481 APAPP--AAPAPAAAPAAPAAPAAPAGADDAAT 511
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 180-305 1.67e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  180 VSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVT 259
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA 464

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 24642740  260 YSAPAPAvtysAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAP 305
Cdd:PRK07764 465 QPAPAPA----AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
rne PRK10811
ribonuclease E; Reviewed
 207-348 1.97e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.96  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   207 PVVRVQAAPAVTYS---APAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTY---SAPAPAVTYSAPAPAVTYSG 280
Cdd:PRK10811  846 PVVRPQDVQVEEQReaeEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAepqPEEVVVVETTHPEVIAAPVT 925

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24642740   281 PAPAVTYSAPAPVPVVRYSAPAPApISYAPAPVSYAPQPQSQQVVKTIKLIVDEDRAPAQVYGPPAVE 348
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPV-VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
225-342 2.31e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.69  E-value: 2.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  225 APAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPA--VTYSAPAPAVTYSAPAPAVTysgpAPAVTYSAPAPVPVVRYS-AP 301
Cdd:PRK14971 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSpsQSSAAAQPSAPQSATQPAGT----PPTVSVDPPAAVPVNPPStAP 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 24642740  302 APAPISYAPAPVSYAPQPQSQQVVKTIKLIVDEDRAPAQVY 342
Cdd:PRK14971 445 QAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNI 485
PHA03247 PHA03247
large tegument protein UL36; Provisional
 167-317 2.34e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   167 PAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAV--TYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPA-----PAPAV 239
Cdd:PHA03247 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVsaTPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgparpARPPT 2762

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24642740   240 TYSAPAPAPvvrvqaaPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVvrySAPAPA-PISYAPAPVSYAP 317
Cdd:PHA03247 2763 TAGPPAPAP-------PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV---LAPAAAlPPAASPAGPLPPP 2831
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 175-346 3.23e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 3.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  175 APAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQA 254
Cdd:PRK07764 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDG 668

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  255 APA-VTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRySAPAPAPISYAPAPVSYAPQPQSQQVVKTIKLIVD 333
Cdd:PRK07764 669 WPAkAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG-QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747

                        170
                 ....*....|...
gi 24642740  334 EDRAPAQVYGPPA 346
Cdd:PRK07764 748 PPDPAGAPAQPPP 760
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 187-285 3.51e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.04  E-value: 3.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   187 PAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAvtySAPAPAPVVRVQAAPAvtySAPAPA 266
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA---AAAAAAPAAPPAAAAA---AAPAAA 111

                          90
                  ....*....|....*....
gi 24642740   267 VtysAPAPAVTYSGPAPAV 285
Cdd:PRK12270  112 A---VEDEVTPLRGAAAAV 127
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 165-286 3.56e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 3.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK07994 394 PQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 24642740  245 APAPVVRVQAAPAVtYSAPAPAVTYSAPAPAVTYSGPAPAVT 286
Cdd:PRK07994 474 AKKEAYRWKATNPV-EVKKEPVATPKALKKALEHEKTPELAA 514
rne PRK10811
ribonuclease E; Reviewed
 193-346 3.68e-05

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.19  E-value: 3.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   193 APAPAPAV-TYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVvrvqAAPAVTysAPAPAVTYSA 271
Cdd:PRK10811  863 EVQVQPVVaEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI----AAPVTE--QPQVITESDV 936

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740   272 PAPAVTYSGPAPAVTySAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQVVKTIKLIVDEDR-APAQVYGPPA 346
Cdd:PRK10811  937 AVAQEVAEHAEPVVE-PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEvAPAQVPEATV 1011
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 165-277 5.25e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.48  E-value: 5.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPA-VTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSA 243
Cdd:PRK14951 401 PAPAAAPAAAASAPAAPPAAAPPApVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480

                         90       100       110
                 ....*....|....*....|....*....|....
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVT 277
Cdd:PRK14951 481 AAPAAARLTPTEEGDVWHATVQQLAAAEAITALA 514
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 220-296 5.80e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 45.65  E-value: 5.80e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24642740   220 SAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVV 296
Cdd:PRK12270   41 TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 171-293 5.97e-05

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 43.60  E-value: 5.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   171 VTYSAPAPAVSYSAPAPAVTYSA-PAPAPAVT---YSAPAPVVR--VQAAPAVTYSApAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:pfam11018  41 ITNNVYTPKTLYSAPAPVVTKSAyAAPAPVVTtyaHAAPAPVVAktVYAAPAVVVYA-APAPVVAKTVTYAAPAVHYAAP 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 24642740   245 APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPV 293
Cdd:pfam11018 120 APVVAKTVYAAPAVQHYAAPAPVEAAAHAAPVVAAAPAAYVKYSPAVVV 168
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
170-348 6.46e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 44.98  E-value: 6.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  170 AVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAvtySAPAPAPV 249
Cdd:PRK12727  54 ALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPR---QAPAAAPV 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  250 VrvqaapavTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAP--------APVPVVRYSAPAPAPISYAPAPVSYAPQPQS 321
Cdd:PRK12727 131 R--------AASIPSPAAQALAHAAAVRTAPRQEHALSAVPeqlfadflTTAPVPRAPVQAPVVAAPAPVPAIAAALAAH 202

                        170       180
                 ....*....|....*....|....*..
gi 24642740  322 QQVVKTIKLIVDEDRAPAQVYGPPAVE 348
Cdd:PRK12727 203 AAYAQDDDEQLDDDGFDLDDALPQILP 229
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 226-305 7.85e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.88  E-value: 7.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   226 PAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPvvrysAPAPAP 305
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA-----APAAAA 112
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
165-312 9.82e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 9.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK07003 454 NARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  245 APAPVV---------------------------RVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVR 297
Cdd:PRK07003 534 PPTPAAaapaaraggaaaaldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGA 613

                        170
                 ....*....|....*
gi 24642740  298 YSAPAPAPISYAPAP 312
Cdd:PRK07003 614 ARAEQAAESRGAPPP 628
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 198-317 1.20e-04

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 42.83  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   198 PAVTYSAPAPVVRvqaapAVTYSAPAPAPAVT-YSAPAPAPAVTYSApAPAPVVRVQAAPAV--TYSAPAPAVTYSAPAP 274
Cdd:pfam11018  48 PKTLYSAPAPVVT-----KSAYAAPAPVVTTYaHAAPAPVVAKTVYA-APAVVVYAAPAPVVakTVTYAAPAVHYAAPAP 121

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 24642740   275 AVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAP 317
Cdd:pfam11018 122 VVAKTVYAAPAVQHYAAPAPVEAAAHAAPVVAAAPAAYVKYSP 164
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 215-319 1.21e-04

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 42.45  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   215 PAVTYSAPAP-APAVTYSAPAPAPAVT-YSAPAPAPVVRVQAAPA-VTYSAPAPAV--TYSAPAPAVTYSGPAPAVTYSA 289
Cdd:pfam11018  48 PKTLYSAPAPvVTKSAYAAPAPVVTTYaHAAPAPVVAKTVYAAPAvVVYAAPAPVVakTVTYAAPAVHYAAPAPVVAKTV 127

                          90       100       110
                  ....*....|....*....|....*....|
gi 24642740   290 PAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:pfam11018 128 YAAPAVQHYAAPAPVEAAAHAAPVVAAAPA 157
flhF PRK06995
flagellar biosynthesis protein FlhF;
165-265 1.26e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 44.19  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAP--APAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYS 242
Cdd:PRK06995  57 AAPAAAQPPPAAAPAAVSRPAAPAAEPAPWlvEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAA 136

                         90       100
                 ....*....|....*....|...
gi 24642740  243 APAPAPVVRVQAAPAVTYSAPAP 265
Cdd:PRK06995 137 AAAPRPRVPADAAAAVADAVKAR 159
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
204-329 1.56e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  204 APAPVVRVQAA-PAVTYSAPAPAPAVTySAPAPAPAVTYSAPAPapvvrVQAAPAVTYSAPAPAVTYSAPAPAVTysgpA 282
Cdd:PRK14971 369 ASGGRGPKQHIkPVFTQPAAAPQPSAA-AAASPSPSQSSAAAQP-----SAPQSATQPAGTPPTVSVDPPAAVPV----N 438

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24642740  283 PAVTysAPAPVPVVRYSAPAPAPISYAPA---PVSYAPQPQSQQVVKTIK 329
Cdd:PRK14971 439 PPST--APQAVRPAQFKEEKKIPVSKVSSlgpSTLRPIQEKAEQATGNIK 486
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 165-251 1.67e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVtysAPAPVVRVQAAPAvtysAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PRK12270   47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA---PPKPAAAAAAAAA----PAAPPAAAAAAAPAAAAVEDEVTP 119

                          90
                  ....*....|
gi 24642740   245 ---APAPVVR 251
Cdd:PRK12270  120 lrgAAAAVAK 129
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 230-314 1.82e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   230 YSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTysgPAPAVTYSAPAPVPVVRYSAPAPAPISYA 309
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP---PKPAAAAAAAAAPAAPPAAAAAAAPAAAA 112


                  ....*
gi 24642740   310 PAPVS 314
Cdd:PRK12270  113 VEDEV 117
PRK10856 PRK10856
cytoskeleton protein RodZ;
165-248 1.91e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 43.09  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPA-VTYSAPAPAPAVTYSAPAPVVRVQAAPAVTySAPAPAPAVTYSAPAPAPAVTYSA 243
Cdd:PRK10856 168 TTTDPATTPAPAAPVDTTPTNSQTpAVATAPAPAVDPQQNAVVAPSQANVDTAAT-PAPAAPATPDGAAPLPTDQAGVST 246


                 ....*
gi 24642740  244 PAPAP 248
Cdd:PRK10856 247 PAADP 251
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 202-293 2.22e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 43.73  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   202 YSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGP 281
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

                          90
                  ....*....|..
gi 24642740   282 APAVTYSAPAPV 293
Cdd:PRK12270  116 EVTPLRGAAAAV 127
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 206-305 2.66e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 43.26  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  206 APVVRVQAAPAVTYSAPAPAPAvtysAPAPAPAvtySAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAV 285
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAAPSPV----RPTPAPS---TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPK 430

                         90       100
                 ....*....|....*....|
gi 24642740  286 TYSAPAPVPVVRYSAPAPAP 305
Cdd:PRK14950 431 LTRAAIPVDEKPKYTPPAPP 450
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 167-308 3.02e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.15  E-value: 3.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   167 PAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAP 246
Cdd:PRK10263  362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24642740   247 APVVRVQAAPAVTYSAPAPAV----TYSAPAPAVTYSGPAPAV-TYSAPAPVPVVRYSAPAPAPISY 308
Cdd:PRK10263  442 VAGNAWQAEEQQSTFAPQSTYqteqTYQQPAAQEPLYQQPQPVeQQPVVEPEPVVEETKPARPPLYY 508
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 215-323 3.25e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 3.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  215 PAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVP 294
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110
                 ....*....|....*....|....*....|
gi 24642740  295 VVRYSAPAPAPISYAPAPV-SYAPQPQSQQ 323
Cdd:PRK07994 441 SEPAAASRARPVNSALERLaSVRPAPSALE 470
PHA03247 PHA03247
large tegument protein UL36; Provisional
 165-322 3.74e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   165 SAPAPAVTYSAPAPAVSYSAPAPAVtySAPAPAPAVTySAPAPVVRVQAAPAVTySAPAPAPAVTYSAPAPAPAVTYSAP 244
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSP--WDPADPPAAV-LAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSLPL 2852

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   245 ----APAPVVRVQA---APAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRySAPAPAPISYAPAPVSYAP 317
Cdd:PHA03247 2853 ggsvAPGGDVRRRPpsrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQP 2931


                  ....*
gi 24642740   318 QPQSQ 322
Cdd:PHA03247 2932 PPPPP 2936
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 188-304 3.86e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.49  E-value: 3.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  188 AVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPaPAPAVTYSAPaPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAV 267
Cdd:PRK14950 354 AVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTR-PKAAAAANIP-PKEPVRETATPPPVPPRPVAPPVPHTPESAPKL 431

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 24642740  268 TYSApAPAVTysgpapAVTYSAPAPVPVVRYSAPAPA 304
Cdd:PRK14950 432 TRAA-IPVDE------KPKYTPPAPPKEEEKALIADG 461
motB PRK12799
flagellar motor protein MotB; Reviewed
 162-283 3.92e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.40  E-value: 3.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  162 VSYSAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPApvvrvQAAPAVTYSAPAPAPAVTYSAPAPAPAVTY 241
Cdd:PRK12799 301 VAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASA-----VALSSAGVLPSDVTLPGTVALPAAEPVNMQ 375

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 24642740  242 SAPAPAPVVRVQAAPAVTYSAPAPavTYSAPAPAVTYSGPAP 283
Cdd:PRK12799 376 PQPMSTTETQQSSTGNITSTANGP--TTSLPAAPASNIPVSP 415
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 170-317 4.06e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 4.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  170 AVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPApvvRVQAAPAVTYSAPAPAPAV-TYSAPAPAPAVTYSAPAPAP 248
Cdd:PTZ00436 194 AAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPA---KAAAPPAKAAAAPAKAAAApAKAAAPPAKAAAPPAKAAAP 270

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24642740  249 VVRVQAAPAVTYSAPAPAV---TYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPaPAPISYAPAPVSYAP 317
Cdd:PTZ00436 271 PAKAAAPPAKAAAPPAKAAappAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP-PAKAATPPAKAAAPP 341
flhF PRK06995
flagellar biosynthesis protein FlhF;
174-285 4.75e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  174 SAPAPAVSySAPAPAVTYSAPAPAPAVTYSAPAPVVrvqAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQ 253
Cdd:PRK06995  49 AALAPPAA-AAPAAAQPPPAAAPAAVSRPAAPAAEP---APWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAA 124

                         90       100       110
                 ....*....|....*....|....*....|..
gi 24642740  254 AAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAV 285
Cdd:PRK06995 125 AENAARRLARAAAAAPRPRVPADAAAAVADAV 156
flhF PRK06995
flagellar biosynthesis protein FlhF;
209-323 4.79e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 4.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  209 VRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAP------APAVTYSAPAPAVTYSGPA 282
Cdd:PRK06995  38 VEIVALADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKrltaqrEQLVARAAAPAAPEAQAPA 117

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 24642740  283 PAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQ 323
Cdd:PRK06995 118 APAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKA 158
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 216-312 4.97e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 4.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  216 AVTYSAPAPAPAvTYSAPAPAPAvtysAPAPAPVVRVQAAPAVTYSaPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPV 295
Cdd:PRK14950 358 ALLVPVPAPQPA-KPTAAAPSPV----RPTPAPSTRPKAAAAANIP-PKEPVRETATPPPVPPRPVAPPVPHTPESAPKL 431

                         90
                 ....*....|....*...
gi 24642740  296 VRYSAPAP-APISYAPAP 312
Cdd:PRK14950 432 TRAAIPVDeKPKYTPPAP 449
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 165-276 5.19e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 42.10  E-value: 5.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPA-VTYSAPAPAVSYSAPAPAVTYSAPAPAPAvtysAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPapavtysa 243
Cdd:PRK14950 362 PVPAPQpAKPTAAAPSPVRPTPAPSTRPKAAAAANI----PPKEPVRETATPPPVPPRPVAPPVPHTPESAP-------- 429

                         90       100       110
                 ....*....|....*....|....*....|...
gi 24642740  244 PAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAV 276
Cdd:PRK14950 430 KLTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462
PRK10856 PRK10856
cytoskeleton protein RodZ;
167-259 5.73e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.55  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  167 PAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTySAPAPVVRVQAaPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAP 246
Cdd:PRK10856 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVA-TAPAPAVDPQQ-NAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

                         90
                 ....*....|...
gi 24642740  247 APVVRVQAAPAVT 259
Cdd:PRK10856 239 TDQAGVSTPAADP 251
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 241-331 6.93e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 42.18  E-value: 6.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   241 YSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTySGPAPAVTYSAPAPVPvvrysAPAPAPISYAPAPVSYAPQPQ 320
Cdd:PRK12270   36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP-APPAAAAPAAPPKPAA-----AAAAAAAPAAPPAAAAAAAPA 109

                          90
                  ....*....|.
gi 24642740   321 SQQVVKTIKLI 331
Cdd:PRK12270  110 AAAVEDEVTPL 120
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 165-291 9.63e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.09  E-value: 9.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPA-----PAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPaPAV 239
Cdd:PTZ00436 216 SAKAAAPAKAAAAPAKAAAPPAkaaaaPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAP-PAK 294

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24642740  240 TYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPA 291
Cdd:PTZ00436 295 AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAA 346
PRK10856 PRK10856
cytoskeleton protein RodZ;
212-304 1.09e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.78  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  212 QAAPAVTYSAPAPAPAvtySAPAPAPAVTySAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPA 291
Cdd:PRK10856 160 QSVPLDTSTTTDPATT---PAPAAPVDTT-PTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAA 235

                         90
                 ....*....|...
gi 24642740  292 PVPVVRYSAPAPA 304
Cdd:PRK10856 236 PLPTDQAGVSTPA 248
PRK10856 PRK10856
cytoskeleton protein RodZ;
183-273 1.12e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.78  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  183 SAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPavtysaPAPAPAVTYSAPAPAPvvrvQAAPAVTYSA 262
Cdd:PRK10856 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA------PSQANVDTAATPAPAA----PATPDGAAPL 237

                         90
                 ....*....|.
gi 24642740  263 PAPAVTYSAPA 273
Cdd:PRK10856 238 PTDQAGVSTPA 248
PHA03247 PHA03247
large tegument protein UL36; Provisional
 166-325 1.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   166 APAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPA 245
Cdd:PHA03247 2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPA 2890

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   246 PAPVVRVQAAPAvtySAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAP-ISYAPAPVSYAPQPQSQQV 324
Cdd:PHA03247 2891 VSRSTESFALPP---DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTdPAGAGEPSGAVPQPWLGAL 2967


                  .
gi 24642740   325 V 325
Cdd:PHA03247 2968 V 2968
PHA03369 PHA03369
capsid maturational protease; Provisional
 178-281 1.30e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 41.14  E-value: 1.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  178 PAVSYSAPAPAVtysaPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPapavtySAPAPAPAVTYSAPAPAPVVRVQAAPA 257
Cdd:PHA03369 355 APSRVLAAAAKV----AVIAAPQTHTGPADRQRPQRPDGIPYSVPAR------SPMTAYPPVPQFCGDPGLVSPYNPQSP 424

                         90       100
                 ....*....|....*....|....
gi 24642740  258 VTySAPAPAVTYSAPAPAVTYSGP 281
Cdd:PHA03369 425 GT-SYGPEPVGPVPPQPTNPYVMP 447
PHA03247 PHA03247
large tegument protein UL36; Provisional
 165-324 1.35e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTySAPAPAPAVTYSAP 244
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT-PEPAPHALVSATPL 2721

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   245 APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAP----------APISYAPAPVS 314
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPrrltrpavasLSESRESLPSP 2801

                         170
                  ....*....|
gi 24642740   315 YAPQPQSQQV 324
Cdd:PHA03247 2802 WDPADPPAAV 2811
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 215-294 1.38e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 41.03  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   215 PAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPvvrvQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVP 294
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPA----PAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 162-323 1.41e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   162 VSYSAPAPAVTYSAPAPAVSYSAPAPAvTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAvtysaPAPAPAVTY 241
Cdd:pfam09770 108 AARAAQSSAQPPASSLPQYQYASQQSQ-QPSKPVRTGYEKYKEPEPIPDLQVDASLWGVAPKKAAA-----PAPAPQPAA 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   242 SAPAPAPVVR-------VQAAPAVTYSAPAPAVtysAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPA--- 311
Cdd:pfam09770 182 QPASLPAPSRkmmsleeVEAAMRAQAKKPAQQP---APAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQhpg 258

                         170
                  ....*....|....*
gi 24642740   312 ---PVSYAPQPQSQQ 323
Cdd:pfam09770 259 qghPVTILQRPQSPQ 273
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
162-305 1.41e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 40.74  E-value: 1.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  162 VSYSAPAPA--VTYSAPAPAVSYSAPAPAVTysapaPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTySAPAPAPAV 239
Cdd:PRK12727 120 VPRQAPAAApvRAASIPSPAAQALAHAAAVR-----TAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAP-VVAAPAPVP 193

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24642740  240 TYSAPAPAPVVRVQAApavTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAP 305
Cdd:PRK12727 194 AIAAALAAHAAYAQDD---DEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
186-266 1.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.91  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  186 APAVTYSAPAPAPAVTYSAPAPVVRVQAAPAV--TYSAPAPAPAVTYSAPAPA---PAVTYSAPAPAPVVRVQAAPAVTY 260
Cdd:PRK14971 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPspSQSSAAAQPSAPQSATQPAgtpPTVSVDPPAAVPVNPPSTAPQAVR 448


                 ....*.
gi 24642740  261 SAPAPA 266
Cdd:PRK14971 449 PAQFKE 454
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 162-258 1.53e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  162 VSYSAPAPAVTYSAPAPAvsySAPAPAVTYSAPaPAPAVTYSAPAPVVRVQ-AAPAVTYSAPAPAPAVTYSAPAPAPAVT 240
Cdd:PRK14950 369 AKPTAAAPSPVRPTPAPS---TRPKAAAAANIP-PKEPVRETATPPPVPPRpVAPPVPHTPESAPKLTRAAIPVDEKPKY 444

                         90
                 ....*....|....*...
gi 24642740  241 YSAPAPAPVVRVQAAPAV 258
Cdd:PRK14950 445 TPPAPPKEEEKALIADGD 462
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 166-265 2.16e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 2.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAvsysAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAvTYSAPAPAPAVTYSAPAPAPAvtysAPA 245
Cdd:PRK14950 361 VPVPAPQPAKPTAA----APSPVRPTPAPSTRPKAAAAANIPPKEPVRETA-TPPPVPPRPVAPPVPHTPESA----PKL 431

                         90       100
                 ....*....|....*....|
gi 24642740  246 PAPVVRVQAAPavTYSAPAP 265
Cdd:PRK14950 432 TRAAIPVDEKP--KYTPPAP 449
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 186-303 2.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  186 APAVTYSAPAPAPAVTYSAPAP-VVRVQA-APAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAApavtysAP 263
Cdd:PRK14959 379 SAPSGSAAEGPASGGAATIPTPgTQGPQGtAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPP------RP 452

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 24642740  264 APAVTYSAPAPavtysGPAPAVTYSAPAPVPVVRYSAPAP 303
Cdd:PRK14959 453 APRMPEASPVP-----GAPDSVASASDAPPTLGDPSDTAE 487
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
165-284 2.63e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 2.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  165 SAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQ---AAPAVTYSAPAPAPAVTYSAPAPAPA--- 238
Cdd:PRK12323 456 AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPpefASPAPAQPDAAPAGWVAESIPDPATAdpd 535

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24642740  239 ----VTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPA 284
Cdd:PRK12323 536 dafeTLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALA 585
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
178-256 3.32e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 39.76  E-value: 3.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  178 PAVSYSAPAP-AVTYSAPAPAPAVTYSAPAPVvrvqAAPAVTYSAPAPaPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAP 256
Cdd:PRK14971 381 PVFTQPAAAPqPSAAAAASPSPSQSSAAAQPS----APQSATQPAGTP-PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455
PHA03369 PHA03369
capsid maturational protease; Provisional
 210-321 4.03e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 39.60  E-value: 4.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  210 RVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSA 289
Cdd:PHA03369 342 KAHNEILKTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNP 421

                         90       100       110
                 ....*....|....*....|....*....|..
gi 24642740  290 PAPVPvvrySAPAPAPISYAPAPVSYAPQPQS 321
Cdd:PHA03369 422 QSPGT----SYGPEPVGPVPPQPTNPYVMPIS 449
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
163-294 4.15e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 39.35  E-value: 4.15e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740 163 SYSAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYS 242
Cdd:COG3469  86 AAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTT 165

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 24642740 243 APAPAPVvrvqAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVP 294
Cdd:COG3469 166 TSTTTTT----TSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 209-321 4.23e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  209 VRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVtySAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYS 288
Cdd:PRK07764 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAAR--PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

                         90       100       110
                 ....*....|....*....|....*....|...
gi 24642740  289 APAPVPVVRYSAPAPAPISYAPAPVSYAPQPQS 321
Cdd:PRK07764 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
166-329 4.52e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 39.20  E-value: 4.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  166 APAPAVTYSAPAPAVSYSAPAPAVTYS--------APAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAP 237
Cdd:PRK12727  70 APAPQAPTKPAAPVHAPLKLSANANMSqrqrvasaAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAV 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  238 AVTYSAPAPAPVVRVQA-------APAVTYSAPAPAVTYSAPAPAVTYSGPAPAVT------------YSAPAPVPVVRY 298
Cdd:PRK12727 150 RTAPRQEHALSAVPEQLfadflttAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYaqdddeqldddgFDLDDALPQILP 229

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 24642740  299 SAPAPAPISYAPAPVSYA------PQPQSQQVVKTIK 329
Cdd:PRK12727 230 PAALPPIVVAPAAPAALAavaaaaPAPQNDEELKQLR 266
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 242-348 6.10e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 6.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  242 SAPAPAPVVRVQAAPAvtySAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAP----------APISYAPA 311
Cdd:PRK14951 367 AAAAEAAAPAEKKTPA---RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPvaapaaaapaAAPAAAPA 443

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 24642740  312 PVSYAPQPQSQQVVKTIKLIVDEDRAPAQVYGPPAVE 348
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480
PRK10856 PRK10856
cytoskeleton protein RodZ;
203-285 6.35e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 38.47  E-value: 6.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  203 SAPAPVVRVQAAPAVTYSAPAPAPAVtysAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAV-TYSAPAPAVTYSGP 281
Cdd:PRK10856 169 TTDPATTPAPAAPVDTTPTNSQTPAV---ATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATpDGAAPLPTDQAGVS 245


                 ....
gi 24642740  282 APAV 285
Cdd:PRK10856 246 TPAA 249
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 243-323 6.50e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.91  E-value: 6.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740   243 APAPAPVVRVQAAPAVT--YSAPAPAVTYSAPAPAVTYSGPAPAVTYSaPAPVPVVRYSAPAPAPISYAPAPvsYAPQPQ 320
Cdd:PRK10263  314 APITEPVAVAAAATTATqsWAAPVEPVTQTPPVASVDVPPAQPTVAWQ-PVPGPQTGEPVIAPAPEGYPQQS--QYAQPA 390


                  ...
gi 24642740   321 SQQ 323
Cdd:PRK10263  391 VQY 393
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 206-323 6.99e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.81  E-value: 6.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  206 APVVRVQAAPAVTYSAPAPAPAVTYSAP---APAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPA 282
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEeaaRPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 24642740  283 PAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQPQSQQ 323
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP 703
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 184-274 7.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.25  E-value: 7.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  184 APAPAVTYSAP-APAPAVTYSAPAPVVRVQAAPAVTysaPAPAPAVTYSAPAPAPAVTYSAPaPAPVVRVQAAPAVTYSA 262
Cdd:PRK14950 361 VPVPAPQPAKPtAAAPSPVRPTPAPSTRPKAAAAAN---IPPKEPVRETATPPPVPPRPVAP-PVPHTPESAPKLTRAAI 436

                         90
                 ....*....|...
gi 24642740  263 PAP-AVTYSAPAP 274
Cdd:PRK14950 437 PVDeKPKYTPPAP 449
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 243-319 8.09e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 38.25  E-value: 8.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24642740  243 APAPAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAPVPVVRYSAPAPAPISYAPAPVSYAPQP 319
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIP 437
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 163-292 8.98e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  163 SYSAPAPAVTYSAPAPAVSYSAPAPAVTYSAPAPAPAVTYSAPAPVVRVQAAPAVTYSAPAPAPAVTYSAPAPAPAVTYS 242
Cdd:PRK07764 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 24642740  243 AP-APAPVVRVQAAPAVTYSAPAPAVTYSAPAPAVTYSGPAPAVTYSAPAP 292
Cdd:PRK07764 741 LPpEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 197-346 9.41e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 38.01  E-value: 9.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24642740  197 APAVTYSAPAPVVRVQAAPAVTYSAPAPAPAvtYSAPAPAPAVTYSAPAPAPVVRVQAAPAVTYSAPAPAVT---YSAPA 273
Cdd:PTZ00436 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPA--KAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAppaKAAAP 270

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24642740  274 PAVTYSGPAPAVTYSAPAPVPVVRySAPAPAPISYAPAPVSYAPQPQSQQVVKTIKLIVDEDRAPAQVYGPPA 346
Cdd:PTZ00436 271 PAKAAAPPAKAAAPPAKAAAPPAK-AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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