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Conserved domains on  [gi|221513080|ref|NP_652408|]
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uncharacterized protein Dmel_CG14104 [Drosophila melanogaster]

Protein Classification

SWI5/SAE3 family protein( domain architecture ID 4282)

SWI5/SAE3 family protein similar to Homo sapiens DNA repair protein SWI5 and Saccharomyces cerevisiae pachytene arrest protein SAE3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Swi5 super family cl06204
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 16-59 9.62e-07

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


The actual alignment was detected with superfamily member pfam07061:

Pssm-ID: 462077  Cd Length: 79  Bit Score: 41.39  E-value: 9.62e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 221513080  16 NETSEGQKKKIIELLHEYNDLKDATQRVLEALANLKCVPVGSVY 59
Cdd:pfam07061 28 EPDPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVY 71
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 16-59 9.62e-07

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 462077  Cd Length: 79  Bit Score: 41.39  E-value: 9.62e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 221513080  16 NETSEGQKKKIIELLHEYNDLKDATQRVLEALANLKCVPVGSVY 59
Cdd:pfam07061 28 EPDPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVY 71
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. ...
 16-59 9.62e-07

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation.3]. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 462077  Cd Length: 79  Bit Score: 41.39  E-value: 9.62e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 221513080  16 NETSEGQKKKIIELLHEYNDLKDATQRVLEALANLKCVPVGSVY 59
Cdd:pfam07061 28 EPDPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVY 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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